Personal information

SBML, bioinformatics, European Bioinformatics Institute, Babraham Institute
United Kingdom

Activities

Employment (3)

Babraham Institute: Cambridge, Cambridgeshire, GB

2012-10-01 to present (Le Novere Lab)
Employment
Source: Self-asserted source
Nicolas Rodriguez

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

2004-09-01 to present | Senior Scientific programmer
Employment
Source: Self-asserted source
Nicolas Rodriguez

Lion Bioscience AG: Heidelberg, DE

2000 to 2004
Employment
Source: Self-asserted source
Nicolas Rodriguez

Education and qualifications (1)

Université de Bordeaux I: Talence, Aquitaine, FR

(LABRI)
Education
Source: Self-asserted source
Nicolas Rodriguez

Works (25)

The systems biology format converter.

2016 | Journal article
Contributors: Rodriguez N; Pettit JB; Dalle Pezze P; Li L; Henry A; van Iersel MP; Jalowicki G; Kutmon M; Natarajan KN; Tolnay D et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

COMBINE Archive Specification Version 1.

2015 | Journal article
Contributors: Bergmann FT; Rodriguez N; Le Novère N
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.

2015-10 | Journal article
Contributors: Rodriguez N; Thomas A; Watanabe L; Vazirabad IY; Kofia V; Gómez HF; Mittag F; Matthes J; Rudolph J; Wrzodek F et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

BioModels: Content, Features, Functionality, and Use.

2015-02 | Journal article
Contributors: Juty N; Ali R; Glont M; Keating S; Rodriguez N; Swat MJ; Wimalaratne SM; Hermjakob H; Le Novère N; Laibe C et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

BioModels: ten-year anniversary.

2015-01 | Journal article
Contributors: Chelliah V; Juty N; Ajmera I; Ali R; Dumousseau M; Glont M; Hucka M; Jalowicki G; Keating S; Knight-Schrijver V et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

2014 | Journal article
Contributors: Bergmann FT; Adams R; Moodie S; Cooper J; Glont M; Golebiewski M; Hucka M; Laibe C; Miller AK; Nickerson DP et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).

2014-06 | Journal article
Contributors: Waltemath D; Bergmann FT; Chaouiya C; Czauderna T; Gleeson P; Goble C; Golebiewski M; Hucka M; Juty N; Krebs O et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

2013 | Journal article
Contributors: Chaouiya C; Bérenguier D; Keating SM; Naldi A; van Iersel MP; Rodriguez N; Dräger A; Büchel F; Cokelaer T; Kowal B et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

Path2Models: large-scale generation of computational models from biochemical pathway maps.

2013-11 | Journal article
Contributors: Büchel F; Rodriguez N; Swainston N; Wrzodek C; Czauderna T; Keller R; Mittag F; Schubert M; Glont M; Golebiewski M et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

The systems biology simulation core algorithm.

2013 | Journal article
Contributors: Keller R; Dörr A; Tabira A; Funahashi A; Ziller MJ; Adams R; Rodriguez N; Le Novère N; Hiroi N; Planatscher H et al.
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

Qualitative translation of relations from BioPAX to SBML qual

Bioinformatics
2012 | Journal article
Contributors: Büchel, F.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

Controlled vocabularies and semantics in systems biology

Molecular Systems Biology
2011 | Journal article
Contributors: Courtot, M.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

JSBML: A flexible java library for working with SBML

Bioinformatics
2011 | Journal article
Contributors: Dräger, A.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

BMC Systems Biology
2010 | Journal article
Contributors: Li, C.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

Data integration and semantic enrichment of systems biology models and simulations

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2009 | Journal article
Contributors: Chelliah, V.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

Designing and encoding models for synthetic biology

Journal of the Royal Society Interface
2009 | Journal article
Contributors: Endler, L.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

SBMLeditor: Effective creation of models in the Systems Biology Markup Language (SBML)

BMC Bioinformatics
2007 | Journal article
Contributors: Rodriguez, N.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier
grade
Preferred source (of 2)‎

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.

Nucleic acids research.
2006 | Journal article
Contributors: Whelan, S.
Source: Self-asserted source
Nicolas Rodriguez via Scopus - Elsevier

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.

2006-01 | Journal article
Contributors: Whelan S; de Bakker PI; Quevillon E; Rodriguez N; Goldman N
Source: Self-asserted source
Nicolas Rodriguez via Europe PubMed Central

BioModels Database: curation and annotation

Source: Self-asserted source
Nicolas Rodriguez

JSBML

Source: Self-asserted source
Nicolas Rodriguez

JSBML update

Source: Self-asserted source
Nicolas Rodriguez

MELTING, a flexible platform to predict the melting temperatures of nucleic acids

Source: Self-asserted source
Nicolas Rodriguez
grade
Preferred source (of 2)‎

SBFC – The Systems Biology Format Converter Framework

Source: Self-asserted source
Nicolas Rodriguez

The System Biology Format Converter

Source: Self-asserted source
Nicolas Rodriguez