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Employment (3)

CSIR – Indian Institute of Chemical Biology: kolkata, IN

Employment
Source: Self-asserted source
abhishek mazumder

University of Oxford: Oxford, Oxfordshire, GB

2017-12-14 to present | research associate (physics)
Employment
Source: Self-asserted source
abhishek mazumder

Waksman Institute of Microbiology: Piscataway, NJ, US

2013-01-23 to present
Employment
Source: Self-asserted source
abhishek mazumder

Works (21)

Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase

Proceedings of the National Academy of Sciences
2024-07-16 | Journal article
Contributors: Ian C. Nova; Jonathan M. Craig; Abhishek Mazumder; Andrew H. Laszlo; Ian M. Derrington; Matthew T. Noakes; Henry Brinkerhoff; Shuya Yang; Hanif Vahedian-Movahed; Lingting Li et al.
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Crossref

Macromolecular crowding has opposite effects on two critical sub‐steps of transcription initiation

FEBS Letters
2024-05 | Journal article
Contributors: Pratip Mukherjee; Abhishek Mazumder
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Crossref

A new twist on PIFE: photoisomerisation-related fluorescence enhancement

Methods and Applications in Fluorescence
2024-01-01 | Journal article
Contributors: Evelyn Ploetz; Benjamin Ambrose; Anders Barth; Richard Börner; Felix Erichson; Achillefs N Kapanidis; Harold D Kim; Marcia Levitus; Timothy M Lohman; Abhishek Mazumder et al.
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Crossref

Bleaching-resistant, Near-continuous Single-molecule Fluorescence and FRET Based on Fluorogenic and Transient DNA Binding.

Chemphyschem : a European journal of chemical physics and physical chemistry
2023-04 | Journal article
Contributors: Kümmerlin M; Mazumder A; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Transient DNA binding to gapped DNA substrates links DNA sequence to the single-molecule kinetics of protein-DNA interactions

2022-02 | Preprint
Contributors: Andrews R; Steuer H; El-Sagheer AH; Mazumder A; el Sayyed H; Shivalingam A; Brown T; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Transcription initiation at a consensus bacterial promoter proceeds via a ‘bind-unwind-load-and-lock’ mechanism

eLife
2021-10-11 | Journal article
Contributors: Abhishek Mazumder; Richard H Ebright; Achillefs N Kapanidis
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Crossref

RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding

Nucleic Acids Research
2021-03-18 | Journal article
Contributors: Abhishek Mazumder; Anna Wang; Heesoo Uhm; Richard H Ebright; Achillefs N Kapanidis
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Crossref

Closing and opening of the RNA polymerase trigger loop.

Proceedings of the National Academy of Sciences of the United States of America
2020-06 | Journal article
Contributors: Mazumder A; Lin M; Kapanidis AN; Ebright RH
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules.

Biophysical journal
2019-10 | Journal article
Contributors: Gilboa B; Jing B; Cui TJ; Sow M; Plochowietz A; Mazumder A; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms.

Journal of molecular biology
2019-05 | Journal article
Contributors: Mazumder A; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

One-dimensional sliding assists σ<sup>70</sup>-dependent promoter binding by Escherichia coli RNA polymerase

2018-12 | Preprint
Contributors: Heller I; Marchetti M; Mazumder A; Chakraborty A; Malinowska AM; Roos WH; Ebright RH; Peterman EJ; Wuite GJ
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp.

Nucleic acids research
2018-08 | Journal article
Contributors: Duchi D; Mazumder A; Malinen AM; Ebright RH; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3).

Molecular cell
2018-03 | Journal article
Contributors: Lin W; Das K; Degen D; Mazumder A; Duchi D; Wang D; Ebright YW; Ebright RY; Sineva E; Gigliotti M et al.
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

2018-03 | Preprint
Contributors: Duchi D; Mazumder A; Malinen AM; Ebright RH; Kapanidis AN
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

A peptide-based synthetic transcription factor selectively activates transcription in a mammalian cell.

Chemical communications (Cambridge, England)
2018-02 | Journal article
Contributors: Roy K; Mazumder A; Ghosh P; Naiya G; Ghosh B; Roy S
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Specific DNA sequences allosterically enhance protein-protein interaction in a transcription factor through modulation of protein dynamics: implications for specificity of gene regulation.

Physical chemistry chemical physics : PCCP
2017-06 | Journal article
Contributors: Mazumder A; Batabyal S; Mondal M; Mondol T; Choudhury S; Ghosh R; Chatterjee T; Bhattacharyya D; Pal SK; Roy S
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation.

Methods in molecular biology (Clifton, N.J.)
2015-01 | Journal article
Contributors: Chakraborty A; Mazumder A; Lin M; Hasemeyer A; Xu Q; Wang D; Ebright YW; Ebright RH
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Ultrafast interfacial solvation dynamics in specific protein DNA recognition.

Biochimie
2013-08 | Journal article
Contributors: Batabyal S; Mondol T; Choudhury S; Mazumder A; Pal SK
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

A genetic network that balances two outcomes utilizes asymmetric recognition of operator sites.

Biophysical journal
2012-04 | Journal article
Contributors: Mazumder A; Bandyopadhyay S; Dhar A; Lewis DE; Deb S; Dey S; Chakrabarti P; Roy S
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

A synthetic peptide mimic of λ-Cro shows sequence-specific binding in vitro and in vivo.

ACS chemical biology
2012-04 | Journal article
Contributors: Mazumder A; Maiti A; Roy K; Roy S
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Recognition of different DNA sequences by a DNA-binding protein alters protein dynamics differentially.

FEBS letters
2012-01 | Journal article
Contributors: Mondol T; Batabyal S; Mazumder A; Roy S; Pal SK
Source: Self-asserted source
abhishek mazumder via Europe PubMed Central

Peer review (4 reviews for 2 publications/grants)

Review activity for Communications biology. (3)
Review activity for Nature communications (1)