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CSIRO: Canberra, AU

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CSIRO

Works (36)

Quantitative genomics-enabled selection for simultaneous improvement of lint yield and seed traits in cotton (Gossypium hirsutum L.)

2024-05-27 | Journal article
DOI: 10.1007/s00122-024-04645-6
Contributors: Zitong Li; Qian-Hao Zhu; Philippe Moncuquet; Iain Wilson; Danny Llewellyn; Stiller, Warwick; Liu, Shiming
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CSIRO

Leveraging Transcriptomics-Based Approaches to Enhance Genomic Prediction: Integrating SNP weights and gene-networks for Cotton Fibre Quality Improvement

2024-02-19 | Preprint
DOI: 10.1101/2024.02.14.580398
Contributors: Nima Khalilisamani; Zitong Li; Filomena Pettolino; Philippe Moncuquet; Antonio Reverter; Colleen P MacMillan
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Crossref

Genetic mapping and characterization of Verticillium Wilt resistance in a recombinant inbred population of Upland cotton

2024-02-05 | Dataset
DOI: 10.25919/41ab-xc19
Contributors: Iain Wilson; Philippe Moncuquet; Yuan, Ray; Zitong Li; Stiller, Warwick; Qian-Hao Zhu
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CSIRO

Omics approaches to improving water productivity in cotton

2023-09-22 | Conference abstract
HANDLE: 102.100.100/600044
Contributors: Annelie Marquardt; Philippe Moncuquet; Warren Conaty
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CSIRO

Molecular biology to the rescue (again!): How genomics aids managing disease resistance in cotton

2023-09-05 | Conference abstract
HANDLE: 102.100.100/599564
Contributors: Iain Wilson; Soliveres, Melanie; Yuan, Ray; Moody, Patrick; Philippe Moncuquet; Zitong Li; Qian-Hao Zhu; Egan, Lucy; Stiller, Warwick
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CSIRO

New approaches to improving water productivity in cotton

2023-09-05 | Conference abstract
HANDLE: 102.100.100/635919
Contributors: Annelie Marquardt; Philippe Moncuquet; Warren Conaty
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CSIRO

Cotton breeding in Australia: Meeting the challenges of the 21st Century

2022-05-13 | Journal article
DOI: 10.3389/fpls.2022.904131
Contributors: Warren Conaty; Broughton, Katie; Egan, Lucy; Li, Xiaoqing; Zitong Li; Liu, Shiming; Danny Llewellyn; MacMillan, Colleen; Philippe Moncuquet; Vivien Rolland et al.
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CSIRO

Genomic prediction of cotton fibre quality and yield traits using Bayesian regression methods

2022-05-10 | Dataset
DOI: 10.25919/k18n-nk98
Contributors: Zitong Li; Liu, Shiming; Warren Conaty; Qian-Hao Zhu; Philippe Moncuquet; Stiller, Warwick; Iain Wilson
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CSIRO

Genomic prediction of cotton fibre quality and yield traits using Bayesian regression methods

2022-05-06 | Journal article
DOI: 10.1038/s41437-022-00537-x
Contributors: Zitong Li; Liu, Shiming; Warren Conaty; Qian-Hao Zhu; Philippe Moncuquet; Stiller, Warwick; Iain Wilson
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CSIRO

BRR RNASeq collection - Cotton

2021-02-12 | Dataset
DOI: 10.25919/a9jn-2y97
Contributors: Philippe Moncuquet
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CSIRO

Genetic mapping and transcriptomic characterisation of a new fuzzless-tufted cottonseed mutant

2021-01-01 | Journal article
DOI: 10.1093/g3journal/jkaa042
Contributors: Qian-Hao Zhu; Stiller, Warwick; Philippe Moncuquet; Gordon, Stuart; Yuan, Ray; Scott Barnes; Iain Wilson
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CSIRO

Genetic mapping and transcriptomic characterization of a new fuzzless-tufted cottonseed mutant

2020-06-11 | Dataset
DOI: 10.25919/5ee196cce855a
Contributors: Philippe Moncuquet
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CSIRO

Characterization and genetic mapping of Black Root Rot resistance in Gossypium arboreum L.

2020-03-05 | Journal article
DOI: 10.3390/ijms22052642
Contributors: Iain Wilson; Philippe Moncuquet; White, Rosemary; Qian-Hao Zhu; Stiller, Warwick; Danny Llewellyn
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CSIRO

Genetic identification and transcriptome analysis of lintless and fuzzless traits in Gossypium arboreum L.

2020-02-29 | Journal article
DOI: 10.3390/ijms21051675
Contributors: Liu, Xueying; Philippe Moncuquet; Qian-Hao Zhu; Stiller, Warwick; Zhang, Zhengsheng; Iain Wilson
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CSIRO

Cotton seed fibre mutants provide insights into critical determinants of cell wall developmental processes

2018-09-23 | Conference abstract
HANDLE: 102.100.100/86458
Contributors: Pettolino, Filomena; Liu, Shiming; Philippe Moncuquet; Iain Wilson; White, Rosemary; MacMillan, Colleen; Yulia, Dina; Danny Llewellyn
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CSIRO

Fantastic fibres: new discoveries for future-proofing?

2018-08-08 | Lecture
HANDLE: 102.100.100/86624
Contributors: MacMillan, Colleen; Kosar-Hashemi, Behjat; Vivien Rolland; Philippe Moncuquet; Reverter-Gomez, Toni; Allen, Sue; He, Pinghua; White, Rosemary; Yulia, Dina; Cooper, Kellie et al.
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CSIRO

Recapitulating early development of mouse musculoskeletal precursors of the paraxial mesoderm in vitro

Development
2018-03-15 | Journal article
DOI: 10.1242/dev.157339
Contributors: Jérome Chal; Ziad Al Tanoury; Masayuki Oginuma; Philippe Moncuquet; Bénédicte Gobert; Ayako Miyanari; Olivier Tassy; Getzabel Guevara; Alexis Hubaud; Agata Bera et al.
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Crossref

Improving disease resistance in cotton using marker assisted breeding

2017-09-07 | Lecture
HANDLE: 102.100.100/87995
Contributors: Gillespie, Vanessa Gillespie; Edwards, Rebecca; Yuan, Ray; Philippe Moncuquet; Washington Gapare; Qian-Hao Zhu; Stiller, Warwick; Danny Llewellyn; Iain Wilson
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CSIRO

Global transcriptomic profiling in barramundi (Lates calcarifer) from rivers impacted by differing agricultural land uses

2017-01 | Journal article
DOI: 10.1002/etc.3505
Contributors: Hook, Sharon; Kroon, Frederieke; Metcalfe, Suzanne; Paul Greenfield; Philippe Moncuquet; McGrath, Annette; Smith, Rachael; Warne, Michael; Turner, Ryan; McKeown, Adam et al.
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CSIRO

Warburg-like metabolism coordinates FGF and Wnt signaling in the vertebrate embryo

2017-01-18 | Preprint
DOI: 10.1101/101451
Contributors: Masayuki Oginuma; Philippe Moncuquet; Fengzhu Xiong; Edward Karoly; Jérome Chal; Karine Guevorkian; Olivier Pourquié
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Crossref

RNASeq files for immune stimulated barramundi

2016-11-27 | Dataset
DOI: 10.4225/08/583b5570b27e5
Contributors: Hook, Sharon; Andrew, Bridle; Crosbie, Philip; Nowak, Barbara; Philippe Moncuquet; McGrath, Annette
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CSIRO

Global transcriptomic profiling in barramundi Lates calcarcifer from agriculturally impacted and pristine rivers in Tropical North Queensland, Australia

2016-09-19 | Conference abstract
HANDLE: 102.100.100/89690
Contributors: Hook, Sharon; Kroon, Frederieke; Jones, Dean; Metcalfe, Suzanne; Paul Greenfield; Philippe Moncuquet; McGrath, Annette; Smith, Rachael; Turner, Ryan; Warne, Michael et al.
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CSIRO

Genome-wide identification and characterization of the homeodomain-leucine zipper I family of genes in cotton (Gossypium spp.)

2016-08-30 | Journal article
HANDLE: 102.100.100/89813
Contributors: Zhang, Jian; Qian-Hao Zhu; Philippe Moncuquet; Danny Llewellyn; Iain Wilson
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CSIRO

RNASeq files for fish health in the Tully and Daintree rivers

2015-09-03 | Dataset
DOI: 10.4225/08/55E799BA0F73E
Contributors: CSIRO; Kroon, Frederieke; Metcalfe, Suzanne; Paul Greenfield; Philippe Moncuquet; McGrath, Annette; Smith, Rachel; Warne, Michael; Turner, Ryan; McKeown, Adam et al.
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CSIRO

Global transcriptomic profiling in barramundi Lates calcarcifer from agriculturally impacted and pristine rivers in Tropical North Queensland, Australia

2015-05-23 | Conference abstract
HANDLE: 102.100.100/92674
Contributors: Hook, Sharon; Kroon, Frederieke; Jones, Dean; Metcalfe, Suzanne; Paul Greenfield; Philippe Moncuquet; McGrath, Annette; Smith, Rachael; Turner, Ryan; Warne, Michael et al.
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CSIRO

Next generation sequence analysis of the transcriptome of Sydney rock oysters (Saccostrea glomerata) exposed to a range of environmental stressors

2014-12 | Journal article
DOI: 10.1016/j.margen.2014.08.003
Contributors: Hook, Sharon; Johnston, Emma; Nair, Sham; Roach, Anthony; Philippe Moncuquet; Twine, Natalie; Raftos, David
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CSIRO

A novel conserved mechanism for plant NLR protein pairs: the ‘integrated decoy’ hypothesis

2014-10-17 | Journal article
HANDLE: 102.100.100/93921
Contributors: Cesari, Stella; Bernoux, Maud; Philippe Moncuquet; Kroj, Thomas; Peter Dodds
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CSIRO

RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium

Marine Genomics
2014-08 | Journal article
DOI: 10.1016/j.margen.2013.12.004
Contributors: Sharon E. Hook; Hannah L. Osborn; Francesca Gissi; Philippe Moncuquet; Natalie A. Twine; Marc R. Wilkins; Merrin S. Adams
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Crossref
grade
Preferred source (of 2)‎

Raw reads and final assembled contigs for Sydney rock oyster (Saccostrea glomerata) project

2014-08-15 | Dataset
DOI: 10.4225/08/53ED4DFE71DA6
Contributors: Hook, Sharon; Johnston, Emma; Nair, Sham; Roach, Anthony; Philippe Moncuquet; Twine, Natalie; Wilkins, Marc; Raftos, David
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CSIRO

454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: Transcriptome assembly and toxicant induced changes

2014-08-01 | Journal article
DOI: 10.1016/j.aquatox.2013.11.022
Contributors: Hook, Sharon; Twine, Natalie; Stuart Simpson; Spadaro, David; Philippe Moncuquet; Wilkins, Marc
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CSIRO

The Galaxy service pilot in CSIRO - a collaboration between science and IT

2013-10-20 | Conference poster
HANDLE: 102.100.100/96298
Contributors: Philippe Moncuquet; Steve McMahon; Li, Sean; Hlinka, Ondrej; Bowden, Josh; Sean McWilliam; McGrath, Annette
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CSIRO

Raw reads and final assembled contigs for pennate diatom project

2013-10-14 | Dataset
DOI: 10.4225/08/525BCD6E6F145
Contributors: Hook, Sharon; Osborn, Hannah; Gissi, Francesca; Philippe Moncuquet; Twine, Natalie; Wilkins, Marc; Merrin Adams
Source: check_circle
CSIRO

The Galaxy service pilot in CSIRO - a collaboration between science and IT

2013-07-01 | Conference poster
HANDLE: 102.100.100/97218
Contributors: Steve McMahon; Philippe Moncuquet; Li, Sean; Hlinka, Ondrej; Bowden, Josh; Sean McWilliam; McGrath, Annette
Source: check_circle
CSIRO

Raw reads and final assembled contigs for Melita project

2013-05-24 | Dataset
DOI: 10.4225/08/519F04075BB7F
Contributors: Hook, Sharon; Twine, Natalie; Stuart Simpson; Spadaro, David; Philippe Moncuquet; Wilkins, Marc
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CSIRO

RNA SEQ of Australian toxicity test species for genome discovery and global gene expression analysis

2013-05-15 | Conference abstract
HANDLE: 102.100.100/97639
Contributors: Hook, Sharon; Merrin Adams; Gissi, Francesca; Philippe Moncuquet; Osborn, Hannah; Stuart Simpson; Spadaro, David; Twine, Natalie; Wilkins, Marc
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CSIRO

RNA SEQ of Australian toxicity test species for genome discovery and global gene expression analysis

2013-05-06 | Conference abstract
HANDLE: 102.100.100/97695
Contributors: Hook, Sharon; Merrin Adams; Gissi, Francesca; Philippe Moncuquet; Osborn, Hannah; Stuart Simpson; Spadaro, David; Twine, Natalie; Wilkins, Marc
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CSIRO
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