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Works (8)

CatPred: a comprehensive framework for deep learning in vitro enzyme kinetic parameters

Nature Communications
2025-02-28 | Journal article
DOI: 10.1038/s41467-025-57215-9
Contributors: Veda Sheersh Boorla; Costas D. Maranas
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CatPred: A comprehensive framework for deep learning in vitro enzyme kinetic parameters kcat, Km and Ki

2024-04-18 | Preprint
DOI: 10.21203/rs.3.rs-4166766/v1
Contributors: Costas Maranas; Veda Sheersh Boorla
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CatPred: A comprehensive framework for deep learning in vitro enzyme kinetic parameterskcat,KmandKi

2024-03-13 | Preprint
DOI: 10.1101/2024.03.10.584340
Contributors: Veda Sheersh Boorla; Costas D. Maranas
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De novo design and Rosetta‐based assessment of high‐affinity antibody variable regions (Fv) against the SARS‐CoV ‐2 spike receptor binding domain ( RBD )

Proteins: Structure, Function, and Bioinformatics
2022-09-16 | Journal article
DOI: 10.1002/prot.26422
Contributors: Veda Sheersh Boorla; Ratul Chowdhury; Ranjani Ramasubramanian; Brandon Ameglio; Rahel Frick; Jeffrey J. Gray; Costas D. Maranas
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Assessing the impact of substrate-level enzyme regulations limiting ethanol titer in Clostridium thermocellum using a core kinetic model

Metabolic Engineering
2022-01 | Journal article
DOI: 10.1016/j.ymben.2021.12.012
Contributors: Charles Foster; Veda Sheersh Boorla; Satyakam Dash; Saratram Gopalakrishnan; Tyler B. Jacobson; Daniel G. Olson; Daniel Amador-Noguez; Lee R. Lynd; Costas D. Maranas
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Computational prediction of the effect of amino acid changes on the binding affinity between SARS-CoV-2 spike RBD and human ACE2

Proceedings of the National Academy of Sciences
2021-10-19 | Journal article
DOI: 10.1073/pnas.2106480118
Contributors: Chen Chen; Veda Sheersh Boorla; Deepro Banerjee; Ratul Chowdhury; Victoria S. Cavener; Ruth H. Nissly; Abhinay Gontu; Nina R. Boyle; Kurt Vandegrift; Meera Surendran Nair et al.
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IPRO+/−: Computational Protein Design Tool Allowing for Insertions and Deletions

Structure
2020-12 | Journal article
DOI: 10.1016/j.str.2020.08.003
Contributors: Ratul Chowdhury; Matthew J. Grisewood; Veda Sheersh Boorla; Qiang Yan; Brian F. Pfleger; Costas D. Maranas
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De novo design of high-affinity antibody variable regions (Fv) against the SARS-CoV-2 spike protein

2020-04-11 | Other
DOI: 10.1101/2020.04.09.034868
Contributors: Veda Sheersh Boorla; Ratul Chowdhury; Costas D. Maranas
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Peer review (1 review for 1 publication/grant)

Review activity for Computational and Structural Biotechnology Journal (1)
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