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Institut Montpelliérain Alexander Grothendiek: Montpellier, Languedoc-Roussillon, FR

2018-09-01 to present | researcher (Mathematics)
Employment
Source: Self-asserted source
Gilles Didier

Works (45)

The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution

Systematic Biology
2023-08-21 | Journal article
DOI: 10.1093/sysbio/syad053
Contributors: Paul Bastide; Gilles Didier
Source: check_circle
Crossref

Distributions of extinction times from fossil ages and tree topologies: the example of mid-Permian synapsid extinctions

PeerJ
2021-12-09 | Journal article
DOI: 10.7717/peerj.12577
Contributors: Gilles Didier; Michel Laurin
Source: check_circle
Crossref

The fossil record of camelids demonstrates a late divergence between Bactrian camel and dromedary

Acta Palaeontologica Polonica
2020-04-16 | Journal article
DOI: 10.4202/app.00727.2020
Source: Self-asserted source
Gilles Didier

Exact distribution of divergence times from fossil ages and tree topologies

Systematic Biology
2020-03-19 | Journal article
DOI: 10.1093/sysbio/syaa021
Part of ISSN: 1063-5157
Part of ISSN: 1076-836X
Source: Self-asserted source
Gilles Didier

Optimal pattern matching algorithms

Journal of Complexity
2019 | Journal article
DOI: 10.1016/j.jco.2018.10.003
EID:

2-s2.0-85055890283
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier
grade
Preferred source (of 3)‎

Testing for correlation between traits under directional evolution

Journal of Theoretical Biology
2019-12 | Journal article
DOI: 10.1016/j.jtbi.2019.08.013
Part of ISSN: 0022-5193
Source: Self-asserted source
Gilles Didier
grade
Preferred source (of 4)‎

Parsimony‐based test for identifying changes in evolutionary trends for quantitative characters: implications for the origin of the amniotic egg

Cladistics
2019-02-21 | Journal article
DOI: 10.1111/cla.12371
Source: Self-asserted source
Gilles Didier

Exact distribution of divergence times from fossil ages and tree topologies

2018-12-09 | Other
DOI: 10.1101/490003
Contributors: Gilles Didier; Michel Laurin
Source: check_circle
Crossref

Detecting the molecular basis of phenotypic convergence

Methods in Ecology and Evolution
2018-11 | Journal article
DOI: 10.1111/2041-210X.13071
Contributors: Olivier Chabrol; Manuela Royer‐Carenzi; Pierre Pontarotti; Gilles Didier; Emmanuel Paradis
Source: check_circle
Crossref

Identifying communities from multiplex biological networks by randomized optimization of modularity

F1000Research
2018-11-22 | Journal article
DOI: 10.12688/f1000research.15486.2
Contributors: Gilles Didier; Alberto Valdeolivas; Anaïs Baudot
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Probabilities of tree topologies with temporal constraints and diversification shifts

2018-07-24 | Other
DOI: 10.1101/376756
Contributors: Gilles Didier
Source: check_circle
Crossref

Identifying communities from multiplex biological networks by randomized optimization of modularity [version 1; referees: awaiting peer review]

2018-07-10 | Journal article
DOI: 10.12688/f1000research.15486.1
Part of ISSN: 2046-1402
Contributors: Gilles Didier; Alberto Valdeolivas; Anaïs Baudot
Source: check_circle
F1000
grade
Preferred source (of 2)‎

Likelihood of Tree Topologies with Fossils and Diversification Rate Estimation

Systematic Biology
2017-11 | Journal article
DOI: 10.1093/sysbio/syx045
ARXIV:

/oup/backfile/content_public/journal/sysbio/66/6/10.1093_sysbio_syx045/3/syx045.pdf
Source: Self-asserted source
Gilles Didier

Time-Dependent-Asymmetric-Linear-Parsimonious Ancestral State Reconstruction

Bulletin of Mathematical Biology
2017-10 | Journal article
DOI: 10.1007/s11538-017-0332-z
Contributors: Gilles Didier
Source: check_circle
Crossref

A comparison of ancestral state reconstruction methods for quantitative characters

Journal of Theoretical Biology
2016 | Journal article
DOI: http://dx.doi.org/10.1016/j.jtbi.2016.05.029
Source: Self-asserted source
Gilles Didier

Designing optimal- and fast-on-average pattern matching algorithms

Journal of Discrete Algorithms
2016 | Journal article
DOI: http://dx.doi.org/10.1016/j.jda.2016.11.001
Source: Self-asserted source
Gilles Didier

Identifying communities from multiplex biological networks

PeerJ
2015 | Journal article
DOI: 10.7717/peerj.1525
EID:

2-s2.0-84955592998
Contributors: Didier, G.; Brun, C.; Baudot, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Choosing the best ancestral character state reconstruction method

Mathematical Biosciences
2013 | Journal article
DOI: 10.1016/j.mbs.2012.12.003
Source: Self-asserted source
Gilles Didier

Relations between gene regulatory networks and cell dynamics in Boolean models

Discrete Applied Mathematics
2012 | Journal article
DOI: 10.1016/j.dam.2012.05.010
Source: Self-asserted source
Gilles Didier

The reconstructed evolutionary process with the fossil record

Journal of Theoretical Biology
2012 | Journal article
DOI: 10.1016/j.jtbi.2012.08.046
Source: Self-asserted source
Gilles Didier

Variable length local decoding and alignment-free sequence comparison

Theoretical Computer Science
2012 | Journal article
DOI: 10.1016/j.tcs.2012.08.005
Source: Self-asserted source
Gilles Didier

Mapping multivalued onto boolean dynamics

Journal of Theoretical Biology
2011 | Journal article
Source: Self-asserted source
Gilles Didier

Mapping multivalued onto Boolean dynamics

Journal of Theoretical Biology
2011 | Journal article
DOI: 10.1016/j.jtbi.2010.09.017
EID:

2-s2.0-78650754127
Contributors: Didier, G.; Remy, E.; Chaouiya, C.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Parametric Maximum Parsimonious Reconstruction on Trees

Bulletin of Mathematical Biology
2011 | Journal article
DOI: 10.1007/s11538-010-9574-8
Source: Self-asserted source
Gilles Didier

MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences

BMC Bioinformatics
2010 | Journal article
DOI: 10.1186/1471-2105-11-406
EID:

2-s2.0-77955082612
Contributors: Corel, E.; Pitschi, F.; Laprevotte, I.; Grasseau, G.; Didier, G.; Devauchelle, C.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

TranscriptomeBrowser: A powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database

PLoS ONE
2008 | Journal article
DOI: 10.1371/journal.pone.0004001
EID:

2-s2.0-58049194189
Contributors: Lopez, F.; Textoris, J.; Bergon, A.; Didier, G.; Remy, E.; Granjeaud, S.; Imbert, J.; Nguyen, C.; Puthier, D.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Character sets of strings

Journal of Discrete Algorithms
2007 | Journal article
DOI: 10.1016/j.jda.2006.03.021
EID:

2-s2.0-34247092755
Contributors: Didier, G.; Schmidt, T.; Stoye, J.; Tsur, D.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Comparing sequences without using alignments: Application to HIV/SIV subtyping

BMC Bioinformatics
2007 | Journal article
DOI: 10.1186/1471-2105-8-1
EID:

2-s2.0-33846639673
Contributors: Didier, G.; Debomy, L.; Pupin, M.; Zhang, M.; Grossmann, A.; Devauchelle, C.; Laprevotte, I.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Local similarities and clustering of biological sequences: New insights from N-local decoding

The First International Symposium on Optimization and Systems Biology
2007 | Conference paper
Source: Self-asserted source
Gilles Didier

Mapping sequences by parts

Algorithms for Molecular Biology
2007 | Journal article
DOI: 10.1186/1748-7188-2-11
EID:

2-s2.0-37449030232
Contributors: Didier, G.; Guziolowski, C.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Coding with variable block maps

Theoretical Computer Science
2006 | Journal article
DOI: 10.1016/j.tcs.2006.09.024
EID:

2-s2.0-33751215230
Contributors: Acuña, V.; Didier, G.; Maass, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Local decoding of sequences and alignment-free comparison

Journal of Computational Biology
2006 | Journal article
DOI: 10.1089/cmb.2006.13.1465
EID:

2-s2.0-33846621879
Contributors: Didier, G.; Laprevotte, I.; Pupin, M.; Hénaut, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

The operons, a criterion to compare the reliability of transcriptome analysis tools

Applied Stochastic Models and Data Analysis
2005 | Conference paper
Source: Self-asserted source
Gilles Didier

An introduction to some mathematical approaches of genomics

1er Encuentro Regional de Probabilidad y Estadística Matemática-Buenos Aires
2004 | Conference paper
Source: Self-asserted source
Gilles Didier

The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA

Computational Biology and Chemistry
2004 | Journal article
DOI: 10.1016/j.compbiolchem.2003.12.001
EID:

2-s2.0-0842330097
Contributors: Carpentier, A.-S.; Riva, A.; Tisseur, P.; Didier, G.; Hénaut, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

A method for segmenting DNA

2003 | Conference paper
Source: Self-asserted source
Gilles Didier

Common intervals of two sequences

Algorithms in Bioinformatics
2003 | Journal article
Source: Self-asserted source
Gilles Didier

Common intervals of two sequences

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2003 | Book
EID:

2-s2.0-35248880682
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

GeneANOVA - Gene expression analysis of variance

Bioinformatics
2002 | Journal article
DOI: 10.1093/bioinformatics/18.3.490
EID:

2-s2.0-0036208440
Contributors: Didier, G.; Brézellec, P.; Remy, E.; Hénaut, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Gizmo : un algorithme de grille cherchant des clusters homogènes

CAP 2001
2001 | Conference paper
Source: Self-asserted source
Gilles Didier

HIV-1 and HIV-2 LTR nucleotide sequences: Assessment of the alignment by N-block presentation,"retroviral signatures" of overrepeated oligonucleotides, and a probable important role of scrambled stepwise duplications/deletions in molecular evolution

Molecular Biology and Evolution
2001 | Journal article
DOI: 10.1093/oxfordjournals.molbev.a003909
EID:

2-s2.0-0034932023
Contributors: Laprevotte, I.; Pupin, M.; Coward, E.; Didier, G.; Terzian, C.; Devauchelle, C.; Hénaut, A.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Caractérisation des N-écritures et application à l'étude des suites de complexité ultimement n + c<sup>ste</sup>

Theoretical Computer Science
1999 | Journal article
DOI: 10.1016/S0304-3975(97)00122-9
EID:

2-s2.0-0002181529
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Codages de rotations et fractions continues

Journal of Number Theory
1998 | Journal article
DOI: 10.1006/jnth.1998.2246
EID:

2-s2.0-0006944842
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Combinatoire des codages de rotations

Acta Arithmetica
1998 | Journal article
DOI: 10.4064/aa-85-2-157-177
EID:

2-s2.0-0032409257
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier

Échanges de trois d’intervalles et suites sturmiennes

Journal de Theorie des Nombres de Bordeaux
1997 | Journal article
DOI: 10.5802/jtnb.213
EID:

2-s2.0-85009932575
Contributors: Didier, G.
Source: Self-asserted source
Gilles Didier via Scopus - Elsevier
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