Lopez R (0000-0003-1256-7306)

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About my team and what we do at the EMBL-EBI: The Web production team, led by Rodrigo Lopez, focuses on three major areas of service: developing and providing platforms for web services; maintaining web infrastructure; and providing robust and secure frameworks for deploying public bioinformatics services. The team maintains and develops the EBI search engine and job dispatcher framework as well as their corresponding SOAP/REST Web Services. Web production also provides access to core services for project management (document management, project documentation and issue tracking, source code control) and user support.

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European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

1996-05-01 to present | Group Leader (External Services - Web Production )

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Lopez R

https://orcid.org/0000-0003-1256-7306

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Employment (2)

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

University of Oslo: Oslo, NO

Education and qualifications (1)

University of Oslo: Oslo, NO

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Web Services for Life Sciences Catalogue (WS4LS)

Works (50 of 113)

The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024

Search and sequence analysis tools services from EMBL-EBI in 2022

The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing

The European Nucleotide Archive in 2020.

UniProt: the universal protein knowledgebase in 2021.

R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

The bio.tools registry of software tools and data resources for the life sciences.

The EMBL-EBI search and sequence analysis tools APIs in 2019.

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

The European Bioinformatics Institute in 2018: tools, infrastructure and training.

UniProt: a worldwide hub of protein knowledge.

HMMER web server: 2018 update.

EMBL-EBI, programmatically: take a REST from manual searches

Discovering and linking public omics data sets using the Omics Discovery Index.

The EBI search engine: EBI search as a service-making biological data accessible for all.

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.

ECCB 2016 Organization

Identifying ELIXIR Core Data Resources.

BiologicalWeb services: Integration, optimization, and reasoning

Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold.

InterPro in 2017-beyond protein family and domain annotations.

ISMB 2016 Proceedings.

ISMB/ECCB 2015 Proceedings Papers Committee.

ISMB/ECCB 2015.

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.

The EMBL-EBI bioinformatics web and programmatic tools framework.

The EBI SRS server- recent developments.

UniProt: a hub for protein information.

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.

Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.

Content discovery and retrieval services at the European Nucleotide Archive.

The InterPro protein families database: the classification resource after 15 years.

ECCB 2014: The 13th European Conference on Computational Biology.

Proceedings of the 13th European Conference on Computational Biology (ECCB’14), September 7-10, 2014, Strasbourg, France.

ISMB 2014 Proceedings Papers Committee.

Activities at the Universal Protein Resource (UniProt).

Assembly information services in the European Nucleotide Archive.

InterProScan 5: Genome-scale Protein Function Classification.

Bioinformatics: Using the Molecular Biology Data

ISMB/ECCB 2013 Proceedings Papers Committee.

Analysis Tool Web Services from the EMBL-EBI.

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.

The annotation-enriched non-redundant patent sequence databases.

Facing growth in the European Nucleotide Archive.

IPD--the Immuno Polymorphism Database.

The EBI enzyme portal.