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Employment (1)

Universidad de Santiago de Chile: Santiago de Chile, CL

2002-07-01 to present | Associate Professor (Departamento de Ingeniería Informática)
Employment
Source: Self-asserted source
Mario Inostroza-Ponta

Education and qualifications (3)

University of Newcastle Australia: NSW, NSW, AU

2004-08-05 to 2008-12-18 | Phd Computer Science (School of Electrical Engineering and Computer Science)
Education
Source: Self-asserted source
Mario Inostroza-Ponta

Universidad de Santiago de Chile Facultad de Ingeniería: Santiago, CL

1998-08-05 to 2000-12-16 | Magister en Ingeniería Informática (Departamento de Ingeniería Informática)
Education
Source: Self-asserted source
Mario Inostroza-Ponta

Universidad de Santiago de Chile Facultad de Ingeniería: Santiago, CL

1994-03-04 to 2000-12-16 | Ingeniero Civil en Informática (Departamento de Ingeniería Informática)
Education
Source: Self-asserted source
Mario Inostroza-Ponta

Works (32)

Exploring the high selectivity of 3-D protein structures using distributed memetic algorithms

Journal of Computational Science
2020-03 | Journal article
DOI: 10.1016/j.jocs.2020.101087
Part of ISSN: 1877-7503
Source: Self-asserted source
Mario Inostroza-Ponta

Molecular Modeling of Epithiospecifier and Nitrile-Specifier Proteins of Broccoli and Their Interaction with Aglycones

Molecules
2020-02-11 | Journal article
DOI: 10.3390/molecules25040772
Part of ISSN: 1420-3049
Source: Self-asserted source
Mario Inostroza-Ponta

Comparison of Phylogenetic Tree Topologies for Nitrogen Associated Genes Partially Reconstruct the Evolutionary History of Saccharomyces cerevisiae

Microorganisms
2019-12-23 | Journal article
DOI: 10.3390/microorganisms8010032
Part of ISSN: 2076-2607
Source: Self-asserted source
Mario Inostroza-Ponta
grade
Preferred source (of 3)‎

A Memetic Algorithm Based on an NSGA-II Scheme for Phylogenetic Tree Inference

IEEE Transactions on Evolutionary Computation
2019-10 | Journal article
DOI: 10.1109/TEVC.2018.2883888
Contributors: Manuel Villalobos-Cid; Marcio Dorn; Rodrigo Ligabue-Braun; Mario Inostroza-Ponta
Source: check_circle
Crossref

A Genetic Algorithm Based on Restricted Tournament Selection for the 3D-PSP Problem

2018 IEEE Congress on Evolutionary Computation, CEC 2018 - Proceedings
2018 | Conference paper
DOI: 10.1109/CEC.2018.8477721
EID:

2-s2.0-85056274271
Contributors: Borguesan, B.; Narloch, P.H.; Inostroza-Ponta, M.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A memetic algorithm for 3D protein structure prediction problem

IEEE/ACM Transactions on Computational Biology and Bioinformatics
2018 | Journal article
DOI: 10.1109/TCBB.2016.2635143
EID:

2-s2.0-85048340079
Contributors: Correa, L.; Borguesan, B.; Farfan, C.; Inostroza-Ponta, M.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Application of different multi-objective decision making techniques in the phylogenetic inference problem

Proceedings - International Conference of the Chilean Computer Science Society, SCCC
2018 | Conference paper
DOI: 10.1109/SCCC.2017.8405145
EID:

2-s2.0-85050964950
Contributors: Villalobos-Cid, M.; Vega-Araya, D.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Evaluating the use of local search strategies for a memetic algorithm for the protein-ligand docking problem

Proceedings - International Conference of the Chilean Computer Science Society, SCCC
2018 | Conference paper
DOI: 10.1109/SCCC.2017.8405141
EID:

2-s2.0-85050963672
Contributors: Ruiz-Tagle, B.; Villalobos-Cid, M.; Dorn, M.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Performance Comparison of Multi-Objective Local Search Strategies to Infer Phylogenetic Trees

2018 IEEE Congress on Evolutionary Computation, CEC 2018 - Proceedings
2018 | Conference paper
DOI: 10.1109/CEC.2018.8477666
EID:

2-s2.0-85056281486
Contributors: Villalobos-Cid, M.; Dorn, M.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Tackling the bi-objective quadratic assignment problem by characterizing different memory strategies in a memetic algorithm

Proceedings - International Conference of the Chilean Computer Science Society, SCCC
2018 | Conference paper
DOI: 10.1109/SCCC.2017.8405140
EID:

2-s2.0-85050958337
Contributors: Sandoval-Soto, R.; Villalobos-Cid, M.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Understanding the Relationship between Decision and Objective Space in the Multi-Objective Phylogenetic Inference Problem

2018 IEEE Congress on Evolutionary Computation, CEC 2018 - Proceedings
2018 | Conference paper
DOI: 10.1109/CEC.2018.8477689
EID:

2-s2.0-85056275936
Contributors: Villalobos-Cid, M.; Dorn, M.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies

BioData Mining
2018-12 | Journal article
DOI: 10.1186/s13040-018-0178-4
Contributors: Jorge Parraga-Alava; Marcio Dorn; Mario Inostroza-Ponta
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A bi-objective model for gene clustering combining expression data and external biological knowledge

Proceedings of the 2016 42nd Latin American Computing Conference, CLEI 2016
2017 | Conference paper
DOI: 10.1109/CLEI.2016.7833327
EID:

2-s2.0-85013870173
Contributors: Parraga-Alava, J.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

An evolutionary multi-agent algorithm to explore the high degree of selectivity in three-dimensional protein structures

2017 IEEE Congress on Evolutionary Computation, CEC 2017 - Proceedings
2017 | Conference paper
DOI: 10.1109/CEC.2017.7969431
EID:

2-s2.0-85028507281
Contributors: De Lima Corrêa, L.; Inostroza-Ponta, M.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Evaluation of a combined energy fitness function for a distributed memetic algorithm to tackle the 3D protein structure prediction problem

Proceedings - International Conference of the Chilean Computer Science Society, SCCC
2017 | Conference paper
DOI: 10.1109/SCCC.2016.7836019
EID:

2-s2.0-85017646176
Contributors: Escobar, I.; Hidalgo, N.; Inostroza-Ponta, M.; Marin, M.; Rosas, E.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins

Journal of Computational Biology
2017 | Journal article
DOI: 10.1089/cmb.2016.0074
EID:

2-s2.0-85014635621
Contributors: Borguesan, B.; Inostroza-Ponta, M.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Using local search strategies to improve the performance of NSGA-II for the Multi-Criteria Minimum Spanning Tree problem

2017 IEEE Congress on Evolutionary Computation, CEC 2017 - Proceedings
2017 | Conference paper
DOI: 10.1109/CEC.2017.7969432
EID:

2-s2.0-85028509186
Contributors: Párraga-Álava, J.; Dorn, M.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Using the QAP grid visualization approach for biomarker identification of cell-specific transcriptomic signatures

Methods in Molecular Biology
2017 | Book
DOI: 10.1007/978-1-4939-6613-4_16
EID:

2-s2.0-85000866085
Contributors: Warren, C.; Inostroza-Ponta, M.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A New Strategy to Evaluate Technical Efficiency in Hospitals Using Homogeneous Groups of Casemix: How to Evaluate When There is Not DRGs?

Journal of Medical Systems
2016 | Journal article
DOI: 10.1007/s10916-016-0458-9
EID:

2-s2.0-84958752085
Contributors: Villalobos-Cid, M.; Chacón, M.; Zitko, P.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A memetic algorithm for protein structure prediction based on conformational preferences of aminoacid residues

GECCO 2015 - Companion Publication of the 2015 Genetic and Evolutionary Computation Conference
2015 | Conference paper
DOI: 10.1145/2739482.2764682
EID:

2-s2.0-84959374245
Contributors: Inostroza-Ponta, M.; Farfán, C.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A Memetic Algorithm for the Quadratic Assignment Problem with parallel local search

2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings
2015 | Conference paper
DOI: 10.1109/CEC.2015.7256978
EID:

2-s2.0-84963552969
Contributors: Harris, M.; Berretta, R.; Inostroza-Ponta, M.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

APL: An angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction

Computational Biology and Chemistry
2015 | Journal article
DOI: 10.1016/j.compbiolchem.2015.08.006
EID:

2-s2.0-84945282049
Contributors: Borguesan, B.; E Silva, M.B.; Grisci, B.; Inostroza-Ponta, M.; Dorn, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

(GTG)<inf>5</inf> MSP-PCR fingerprinting as a technique for discrimination of wine associated yeasts?

PLoS ONE
2014 | Journal article
DOI: 10.1371/journal.pone.0105870
EID:

2-s2.0-84931586626
Contributors: Ramírez-Castrillón, M.; Mendes, S.D.C.; Inostroza-Ponta, M.; Valente, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A knowledge-based genetic algorithm to predict three-dimensional structures of polypeptides

2013 IEEE Congress on Evolutionary Computation, CEC 2013
2013 | Conference paper
DOI: 10.1109/CEC.2013.6557706
EID:

2-s2.0-84881582087
Contributors: Dorn, M.; Inostroza-Ponta, M.; Buriol, L.S.; Verli, H.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Evaluating memory schemas in a memetic algorithm for the quadratic assignment problem

Proceedings - International Conference of the Chilean Computer Science Society, SCCC
2012 | Conference paper
DOI: 10.1109/SCCC.2011.3
EID:

2-s2.0-84887843944
Contributors: Meneses, H.; Inostroza-Ponta, M.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Genome-wide analysis of long noncoding RNA stability

Genome Research
2012 | Journal article
DOI: 10.1101/gr.131037.111
EID:

2-s2.0-84860581983
Contributors: Clark, M.B.; Johnston, R.L.; Inostroza-Ponta, M.; Fox, A.H.; Fortini, E.; Moscato, P.; Dinger, M.E.; Mattick, J.S.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Clustering nodes in large-scale biological networks using external memory algorithms

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2011 | Book
DOI: 10.1007/978-3-642-24669-2_36
EID:

2-s2.0-80455162373
Contributors: Arefin, A.S.; Inostroza-Ponta, M.; Mathieson, L.; Berretta, R.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

QAPgrid: A two level QAP-based approach for large- scale data analysis and visualization

PLoS ONE
2011 | Journal article
DOI: 10.1371/journal.pone.0014468
EID:

2-s2.0-79251570254
Contributors: Inostroza-Ponta, M.; Berretta, R.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

A Transcription Factor Map as Revealed by a Genome- Wide Gene Expression Analysis of Whole-Blood mRNA Transcriptome in Multiple Sclerosis

PLoS ONE
2010 | Journal article
DOI: 10.1371/journal.pone.0014176
EID:

2-s2.0-78649928621
Contributors: Riveros, C.; Mellor, D.; Gandhi, K.S.; Mckay, F.C.; Cox, M.B.; Berretta, R.; Vaezpour, S.Y.; Inostroza-Ponta, M.; Broadley, S.A.; Heard, R.N. et al.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

Is there more than one proctitis syndrome? A revisitation using data from the TROG 96.01 trial

Radiotherapy and Oncology
2009 | Journal article
DOI: 10.1016/j.radonc.2008.09.019
EID:

2-s2.0-61349141208
Contributors: Capp, A.; Inostroza-Ponta, M.; Bill, D.; Moscato, P.; Lai, C.; Christie, D.; Lamb, D.; Turner, S.; Joseph, D.; Matthews, J. et al.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

An integrated QAP-based approach to visualize patterns of gene expression similarity

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2007 | Book
EID:

2-s2.0-38149113534
Contributors: Inostroza-Ponta, M.; Mendes, A.; Berretta, R.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier

An automatic graph layout procedure to visualize correlated data

IFIP International Federation for Information Processing
2006 | Book
DOI: 10.1007/978-0-387-34747-9_19
EID:

2-s2.0-33845533162
Contributors: Inostroza-Ponta, M.; Berretta, R.; Mendes, A.; Moscato, P.
Source: Self-asserted source
Mario Inostroza-Ponta via Scopus - Elsevier
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