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Other IDs

ResearcherID: J-4655-2014
Loop profile: 206504
Scopus Author ID: 55260330500

Keywords

Bioinformatics, Computational biology, Web development, Android development, Programming

Countries

Türkiye

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Employment (5)

Seven Bridges: Ankara, TR

2016-12-05 to present | Bioinformatics Analyst (Computational Biology)
Employment
Source: Self-asserted source
Gungor Budak

Indiana University Purdue University at Indianapolis: Indianapolis, IN, US

2015-10-01 to 2016-06-01 | Research Scholar (School of Informatics and Computing)
Employment
Source: Self-asserted source
Gungor Budak

Evias Pharmaceutical R&D: Ankara, TR

2015-02-01 to 2015-09-31 | Software Specialist (R&D)
Employment
Source: Self-asserted source
Gungor Budak

Maastricht University: Maastricht, Limburg, NL

2013-06-12 to 2013-09-09 | Intern (Bioinformatics)
Employment
Source: Self-asserted source
Gungor Budak

Deutsches Krebsforschungszentrum: Heidelberg, Baden-Württemberg, DE

2012-06-14 to 2012-10-11 | Intern (Bioinformatics)
Employment
Source: Self-asserted source
Gungor Budak

Education and qualifications (3)

Middle East Technical University: Ankara, TR

2016-10-07 to present | PhD (Computer Engineering)
Education
Source: Self-asserted source
Gungor Budak

Middle East Technical University: Ankara, TR

2014-09-17 to 2016-09-09 | MSc (Bioinformatics)
Education
Source: Self-asserted source
Gungor Budak

Middle East Technical University: Ankara, Ankara, TR

2010-09-10 to 2014-02-03 | BSc (Biology)
Education
Source: Self-asserted source
Gungor Budak

Works (8)

Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis

Nature Communications
2022-08-04 | Journal article
DOI: 10.1038/s41467-022-31724-3
Contributors: H. Serhat Tetikol; Deniz Turgut; Kubra Narci; Gungor Budak; Ozem Kalay; Elif Arslan; Sinem Demirkaya-Budak; Alexey Dolgoborodov; Duygu Kabakci-Zorlu; Vladimir Semenyuk et al.
Source: check_circle
Crossref

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

Experimental eye research
2018-01 | Journal article
DOI: 10.1016/j.exer.2018.01.009
PMID: 29337142
Contributors: Budak G; Dash S; Srivastava R; Lachke SA; Janga SC
Source: Self-asserted source
Gungor Budak via Europe PubMed Central

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

Scientific Reports
2017-09 | Journal article
DOI: 10.1038/s41598-017-10615-4
Contributors: Rajneesh Srivastava; Gungor Budak; Soma Dash; Salil A. Lachke; Sarath Chandra Janga
Source: Self-asserted source
Gungor Budak via Crossref Metadata Search

Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles

RNA
2017-06 | Journal article
DOI: 10.1261/rna.059089.116
Contributors: Gungor Budak; Rajneesh Srivastava; Sarath Chandra Janga
Source: check_circle
Crossref

ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes.

2016 | Journal article
PMID: 27528797
PMC: PMC4976794
Contributors: Hashemikhabir S; Budak G; Janga SC
Source: Self-asserted source
Gungor Budak via Europe PubMed Central

Inferring causal molecular networks: empirical assessment through a community-based effort.

2016-02 | Journal article
DOI: 10.1038/nmeth.3773
PMID: 26901648
Contributors: Hill SM; Heiser LM; Cokelaer T; Unger M; Nesser NK; Carlin DE; Zhang Y; Sokolov A; Paull EO; Wong CK et al.
Source: Self-asserted source
Gungor Budak via Europe PubMed Central

Reconstruction of the temporal signaling network in Salmonella-infected human cells

Front. Microbiol.
2015-07 | Journal article
DOI: 10.3389/fmicb.2015.00730
Contributors: Gungor Budak; Oyku Eren Ozsoy; Yesim Aydin Son; Tolga Can; Nurcan Tuncbag
Source: Self-asserted source
Gungor Budak via Crossref Metadata Search

M4B: A novel method for designing and ordering of the genetic devices

2012 7th International Symposium on Health Informatics and Bioinformatics
2012-04 | Conference paper
DOI: 10.1109/hibit.2012.6209054
Contributors: Seyedsasan Hashemikhabir; Gokhan Ersoy; Gokce Oguz; Burcu Yaldiz; Yener Tuncel; Gungor Budak; Saygin Karaaslan; Yesim Aydin Son; Tolga Can
Source: Self-asserted source
Gungor Budak via Crossref Metadata Search
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