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Acıbadem University: Istanbul, TR

2024-05-15 to present | Professor (Molecular Biology and Genetics)
Employment
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batu erman

Boğaziçi Üniversitesi: Istanbul, TR

2020-12-23 to 2024-05-15 | Professor (Molecular Biology and Genetics)
Employment
Source: Self-asserted source
batu erman

Sabanci University: Tuzla, Istanbul, TR

2004-09-01 to 2020-12-20 | Professor (Faculty of Engineering and Natural Sciences)
Employment
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batu erman

Works (50 of 62)

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Evaluation of Clinical and Immunological Alterations Associated with ICF Syndrome

Journal of Clinical Immunology
2024-01 | Journal article
Part of ISSN: 0271-9142
Part of ISSN: 1573-2592
Contributors: Sevgi Bilgic Eltan; Ercan Nain; Mehmet Cihangir Catak; Ege Ezen; Asena Pınar Sefer; Nastaran Karimi; Ayca Kiykim; Burcu Kolukisa; Dilek Baser; Alper Bulutoglu et al.
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batu erman

Human ACE2 orthologous peptide sequences show better binding affinity to SARS-CoV-2 RBD domain: Implications for drug design

Computational and Structural Biotechnology Journal
2023 | Journal article
Part of ISSN: 2001-0370
Contributors: Lena Mahmoudi Azar; Muhammed Miran Öncel; Elif Karaman; Levent Faruk Soysal; Ayesha Fatima; Sy Bing Choi; Alp Ertunga Eyupoglu; Batu Erman; Asif M. Khan; Serdar Uysal
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batu erman

Dimerization choice and alternative functions of <scp>ZBTB</scp> transcription factors

The FEBS Journal
2023-07-21 | Journal article | Author
Part of ISSN: 1742-464X
Part of ISSN: 1742-4658
Contributors: Sarah Barakat; Ege Ezen; N. Izem Devecioglu; Melike Gezen; Sofia Piepoli; batu erman
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Expression and characterization of recombinant IL-1Ra in Aspergillus oryzae as a system

BMC Biotechnology
2023-06-20 | Journal article
Part of ISSN: 1472-6750
Contributors: Lena Mahmoudi Azar; Elif Karaman; Burcu Beyaz; Işılay Göktan; Alp Ertunga Eyüpoğlu; Seda Kizilel; Batu Erman; Ahmet Gül; Serdar Uysal
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Reversal of the T cell immune system reveals the molecular basis for T cell lineage fate determination in the thymus

Nature Immunology
2022 | Journal article
Contributors: Shinzawa, Miho; Moseman, E. Ashley; Gossa, Selamawit; Mano, Yasuko; Bhattacharya, Abhisek; Guinter, Terry; Alag, Amala; Chen, Xiongfong; Cam, Maggie; McGavern, Dorian B. et al.
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Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth

Plos One
2022 | Journal article
Contributors: Somuncu, Berna; Ekmekcioglu, Aysegul; Antmen, Fatma Merve; Ertuzun, Tugce; Deniz, Emre; Keskin, Nazli; Park, Joon; Yazici, Ilgu Ece; Simsek, Busra; Erman, Batu et al.
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Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers

Life Science Alliance
2022-11 | Journal article | Author
Part of ISSN: 2575-1077
Contributors: Sofia Piepoli; Sarah Barakat; Liyne Nogay; Büşra Şimşek; Ümit Akköse; Hakan Taskiran; Nazife Tolay; Melike Gezen; Canberk Yarkın Yeşilada; Mustafa Tuncay et al.
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Nanobodies as molecular imaging probes

Free Radical Biology and Medicine
2022-03 | Journal article
Contributors: Sarah Barakat; Melike Berksöz; Pegah Zahedimaram; Sofia Piepoli; Batu Erman
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Isolation and characterization of nanobodies that bind the BTB domain of the PATZ1 transcription factor

European Journal of Immunology
2021 | Journal article
Contributors: Barakat, Sarah; De Marko, Ario; Erman, Batu
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Sibling rivalry among the ZBTB transcription factor family: homo vs heterodimerization

European Journal of Immunology
2021 | Journal article
Contributors: Piepoli, Sofia; Akkose, Umit; Nogay, Liyne; Taskiran, Hakan; Tolay, Nazife; Gezen, Melike; Adebali, Ogun; Atilgan, Canan; Erman, Batu
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Synchronous and Asynchronous Response in Dynamically Perturbed Proteins

The Journal of Physical Chemistry B
2021 | Journal article
Contributors: Hacisuleyman, Aysima; Erkip, Albert; Erman, Batu; Erman, Burak
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The mechanism of LRBA dependent CTLA-4 surface expression in regulatory T cell lymphocytes

European Journal of Immunology
2021 | Journal article
Contributors: Zahedimaram, Pegah; Erman, Batu; Baris, Safa
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Sibling rivalry among the ZBTB transcription factor family: homo vs. heterodimers

2021-12-17 | Preprint
Contributors: Sofia Piepoli; Liyne Nogay; Umit Akkose; Sarah Barakat; Hakan Taskiran; Nazife Tolay; Melike Gezen; Ogun Adebali; Canan Atilgan; Batu Erman
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Doxorubicin inhibits miR-140 expression and upregulates PD-L1 expression in HCT116 cells,opposite to its effects on MDA-MB-231 cells

Turkish Journal of Biology
2020 | Journal article
Contributors: Naba, Noel Mopouguini; Tolay, Nazife; Erman, Batu; Sayi Yazgan, Ayca
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Engineering antigen-specific natural killer cells against the melanoma-associated antigen tyrosinase via TCR gene transfer

Cancer Immunology Research
2020 | Journal article
Contributors: Parlar, Ayhan; Sayitoglu, Ece C.; Pamukcu, Cevriye; Georgoudaki, Anna-Maria; Ozkazanc, Didem; Aras, Mertkaya; Josey, Benjamin; Chrobok, Michael; Branecki, Suzanne; Zahedimaram, Pegah et al.
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Molecular Biology of SARS-CoV-2

Turkish Journal of Immunology
2020 | Journal article
Contributors: Piepoli, Sofia; Shamloo, Bahar; Bircan, Aylin; Adebali, Ogun; Erman, Batu
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p53 regulates katanin-p60 promoter in HCT 116 cells

Gene
2020 | Journal article
Contributors: Kirimtay, Koray; Selcuk, Ece; Kelle, Dolunay; Erman, Batu; Karabay, Arzu
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Synchronous and Asynchronous Response in Dynamically Perturbed Proteins

2020-09-14 | Preprint
Contributors: Albert Erkip; Aysima Hacisuleyman; Batu Erman; Burak Erman
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Structural analysis of the PATZ1 BTB domain homodimer

Acta Crystallographica Section D Structural Biology
2020-06-01 | Journal article
Contributors: Sofia Piepoli; Aaron Oliver Alt; Canan Atilgan; Erika Jazmin Mancini; Batu Erman
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Structural Analysis of the PATZ1 BTB domain homodimer

2020-01-14 | Preprint
Contributors: Sofia Piepoli; Aaron Oliver Alt; Canan Atilgan; Erika J. Mancini; Batu Erman
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Approaches to functionally validate candidate genetic variants involved in colorectal cancer predisposition

Molecular Aspects of Medicine
2019 | Journal article
Contributors: Bonjoch, Laia; Mur, Pilar; Arnau-Collell, Coral; Vargas-Parra, Gardenia; Shamloo, Bahar; Franch-Exposito, Sebastia; Pineda, Marta; Capella, Gabriel; Erman, Batu; Castellvi-Bel, Sergi
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Engineering antigen-specific NK cell lines against the melanoma-associated antigen tyrosinase via TCR gene transfer

European Journal of Immunology
2019 | Journal article
Contributors: Parlar, Ayhan; Sayitoglu, Ece Canan; Ozkazanc, Didem; Georgoudaki, Anna-Maria; Pamukcu, Cevriye; Aras, Mertkaya; Josey, Benjamin J.; Chrobok, Michael; Branecki, Suzanne; Zahedimaram, Pegah et al.
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Nanocomposite Bioinks Based on Agarose and 2D Nanosilicates with Tunable Flow Properties and Bioactivity for 3D Bioprinting

ACS Applied Bio Materials
2019 | Journal article
Contributors: Nadernezhad, Ali; Caliskan, Ozum S.; Topuz, Fuat; Afghah, Ferdows; Erman, Batu; Koc, Bahattin
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The fungal metabolite chaetocin is a sensitizer for pro-apoptotic therapies in glioblastoma

Cell Death and Disease
2019 | Journal article
Contributors: Ozyerli-Goknar, Ezgi; Sur-Erdem, Ilknur; Seker, Fidan; Cingoz, Ahmet; Kayabolen, Alisan; Kahya-Yesil, Zeynep; Uyulur, Firat; Gezen, Melike; Tolay, Nazife; Erman, Batu et al.
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Identification and strategic targeting of key anti-viral defense mechanisms in Natural Killer cells

The Journal of Immunology
2018 | Journal article
Contributors: Sayitoglu, Ece Canan; Ozkazanc, Didem; Sarac, Aydan; Parlar, Ayhan; Alici, Evren; Erman, Batu; Duru, Adil Doganay; Sutlu, Tolga
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Editing of Long Noncoding RNA DANCR Gene Locus Using Genetic Engineering Tools

National Biomedical Engineering Meeting (BIYOMUT)
2017 | Conference paper
Contributors: Baran, Gulin; Talug, Burcu; Keskin, Nazli; Keskin, Zeynep Tokcaer; Erman, Batu; Deniz, Emre
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Engineering antigen-specific NK cells via TCR gene transfer: A novel source for adoptive immunotherapy

Human Gene Therapy
2017 | Journal article
Contributors: Parlar, A.; Pamukcu, C.; Ozkazanc, D.; Aras, M.; Dahlberg, C.; Chrobok, M.; Zahedimaram, P.; Ikromzoda, L.; Sayitoglu, E. C.; Alici, E. et al.
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Identification of lineage-specifying cytokines that signal all CD8(+)-cytotoxic-lineage-fate 'decisions' in the thymus

Nature Immunology
2017 | Journal article
Contributors: Etzensperger, Ruth; Kadakia, Tejas; Tai, Xuguang; Alag, Amala; Guinter, Terry I.; Egawa, Takeshi; Erman, Batu; Singer, Alfred
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Long noncoding RNA (lincRNA), a new paradigm in gene expression control

Functional & Integrative Genomics
2017 | Journal article
Contributors: Deniz, Emre; Erman, Batu
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Characterization of PATZ1 protein structure and its interaction with the tumor suppressor protein p53

The FEBS Journal
2016 | Journal article
Contributors: Piepoli, S.; Erman, B.; Atilgan, C.
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Screening of new antileukemic agents from essential oils of algae extracts and computational modeling of their interactions with intracellular signaling nodes

European Journal of Pharmaceutical Sciences
2016 | Journal article
Contributors: Ataseyer-Arslan, Belkis; Yilancioglu, Kaan; Kalkan, Zeynep; Timucin, Ahmet Can; Gur, Hazal; Isik, Fatma Busra; Deniz, Emre; Erman, Batu; Cetiner, Selim
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Antileukemic Drug Potentials of Essential Oils of Algea Extracts

Acta Physiologica
2015 | Journal article
Contributors: Arslan, Belkis Atasever; Yilancioglu, Kaan; Kalkan, Zeynep; Atalay, Vildan Enisoglu; Gur, Hazal; Isik, Fatma Busra; Deniz, Emre; Erman, Batu; Cetiner, Selim
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Innate immune sensors restrict lentiviral gene delivery to human natural killer cells: novel perspectives on the use of viral vectors

Human Gene Therapy
2015 | Journal article
Contributors: Sayitoglu, E. C.; Duru, A. D.; Chrobok, M.; Chiang, C.; Parlar, A.; Senturk, G. H.; Erman, B.; Alici, E.; Sutlu, T.
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PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function

Molecular and Cellular Biology
2015 | Journal article
Contributors: Keskin, Nazli; Deniz, Emre; Eryilmaz, Jitka; Un, Manolya; Batur, Tugce; Ersahin, Tulin; Atalay, Rengul Cetin; Sakaguchi, Shinya; Ellmeier, Wilfried; Erman, Batu
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Oxidative Stress Is a Mediator for Increased Lipid Accumulation in a Newly Isolated Dunaliella salina Strain

Plos One
2014 | Journal article
Contributors: Yilancioglu, Kaan; Cokol, Murat; Pastirmaci, Inanc; Erman, Batu; Cetiner, Selim
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Effects of micro environmental factors on natural killer activity (NK) of Beta Thalassemia major patients

Cellular Immunology
2013 | Journal article
Contributors: Arslan, Belkis Atasever; Erdem-Kuruca, Serap; Karakas, Zeynep; Erman, Batu; Ergen, Arzu
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Foxp3 Transcription Factor Is Proapoptotic and Lethal to Developing Regulatory T Cells unless Counterbalanced by Cytokine Survival Signals

Immunity
2013 | Journal article
Contributors: Tai, Xuguang; Erman, Batu; Alag, Amala; Mu, Jie; Kimura, Motoko; Katz, Gil; Guinter, Terry; McCaughtry, Tom; Etzensperger, Ruth; Feigenbaum, Lionel et al.
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CD8 Lineage-specific Regulation of Interleukin-7 Receptor Expression by the Transcriptional Repressor Gfi1

Journal of Biological Chemistry
2012 | Journal article
Contributors: Ligons, Davinna L.; Tuncer, Ceren; Linowes, Brett A.; Akcay, Izzet Mehmet; Kurtulus, Sema; Deniz, Emre; Arslan, Belkis Atasever; Cevik, Safak Isil; Keller, Hilary R.; Luckey, Megan A. et al.
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Cd81 Interacts with the T Cell Receptor to Suppress Signaling

Plos One
2012 | Journal article
Contributors: Cevik, Safak Isil; Keskin, Nazli; Belkaya, Serkan; Ozlu, Meral Ilcim; Deniz, Emre; Tazebay, Uygar Halis; Erman, Batu
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Conditional deletion of cytokine receptor chains reveals that IL-7 and IL-15 specify CD8 cytotoxic lineage fate in the thymus

Journal of Experimental Medicine
2012 | Journal article
Contributors: McCaughtry, Tom M.; Etzensperger, Ruth; Alag, Amala; Tai, Xuguang; Kurtulus, Sema; Park, Jung-Hyun; Grinberg, Alex; Love, Paul; Feigenbaum, Lionel; Erman, Batu et al.
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Coreceptor gene imprinting governs thymocyte lineage fate

The EMBO Journal
2012 | Journal article
Contributors: Adoro, Stanley; McCaughtry, Thomas; Erman, Batu; Alag, Amala; Van Laethem, Francois; Park, Jung-Hyun; Tai, Xuguang; Kimura, Motoko; Wang, Lie; Grinberg, Alex et al.
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Signaling by intrathymic cytokines, not T cell antigen receptors, specifies CD8 lineage choice and promotes the differentiation of cytotoxic-lineage T cells

Nature Immunology
2010 | Journal article
Contributors: Park, Jung-Hyun; Adoro, Stanley; Guinter, Terry; Erman, Batu; Alag, Amala S.; Catalfamo, Marta; Kimura, Motoko Y.; Cui, Yongzhi; Lucas, Philip J.; Gress, Ronald E. et al.
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Interleukin 7 signaling in dendritic cells regulates the homeostatic proliferation and niche size of CD4(+) T cells

Nature Immunology
2009 | Journal article
Contributors: Guimond, Martin; Veenstra, Rachelle G.; Grindler, David J.; Zhang, Hua; Cui, Yongzhi; Murphy, Ryan D.; Kim, Su Young; Na, Risu; Hennighausen, Lothar; Kurtulus, Sema et al.
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NATURAL KILLER ACTIVITY AND EFFECT OF IL-2 IN PATIENTS WITH beta-THALASSEMIA MAJOR

Haematologica
2009 | Journal article
Contributors: Karakas, Z.; Atasever, B.; Kuruca, S. Erdem; Erman, B.; Ergen, A.; Isbir, T.; Agaoglu, L.
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PHENOTYPIC AND FUNCTIONAL STUDIES OF NATURAL KILLER (NK) CELL SUBSETS IN beta-THALASSEMIA MAJOR PATIENTS

Haematologica
2009 | Journal article
Contributors: Atasever, B.; Kuruca, S. Erdem; Karakas, Z.; Erman, B.; Ergen, A.; Isbir, T.; Gunal, G.
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Targeting CD4 Coreceptor Expression to Postselection Thymocytes Reveals That CD4/CD8 Lineage Choice Is neither Error-Prone nor Stochastic

The Journal of Immunology
2008 | Journal article
Contributors: Adoro, Stanley; Erman, Batu; Sarafova, Sophia D.; Van Laethem, Francois; Park, Jung-Hyun; Feigenbaum, Lionel; Singer, Alfred
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'Coreceptor tuning': cytokine signals transcriptionally tailor CD8 coreceptor expression to the self-specificity of the TCR

Nature Immunology
2007 | Journal article
Contributors: Park, Jung-Hyun; Adoro, Stanley; Lucas, Philip J.; Sarafova, Sophia D.; Alag, Amala S.; Doan, Loretta L.; Erman, Batu; Liu, Xiaolong; Ellmeier, Wilfried; Bosselut, Remy et al.
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Coreceptor tuning: IL-7 signals transcriptionally tailor CD8 coreceptor expression in CD8 T cells to the self-specificity of their TCR

Cytokine
2007 | Journal article
Contributors: Park, Jung-Hyun; Adoro, Stanley; Lucas, Philip J.; Sarafova, Sophia D.; Alag, Amala; Doan, Loretta L.; Erman, Batu; Liu, Xiaolong; Ellmeier, Wilfried; Bosselut, Remy et al.
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Computational search of the interaction between melanopsin and cryptochrome-2 proteins

The FEBS Journal
2006 | Journal article
Contributors: Unal, E. B.; Erman, B.; Kavakli, I. H.
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Coreceptor signal strength regulates positive selection but does not determine CD4/CD8 lineage choice in a physiologic in vivo model

The Journal of Immunology
2006 | Journal article
Contributors: Erman, Batu; Alag, Amala S.; Dahle, Oyvind; van Laethem, Francois; Sarafova, Sophia D.; Guinter, Terry I.; Sharrow, Susan O.; Grinberg, Alexander; Love, Paul E.; Singer, Alfred
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