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Works (41)

After the Microscope: Long-Term Care of Electron Tomography Data

Focus on Structural Biology
2024 | Book chapter
Part of ISBN: 9783031511707
Part of ISBN: 9783031511714
Part of ISSN: 1571-4853
Part of ISSN: 2542-9566
Contributors: Catherine M. Oikonomou; Grant J. Jensen
Source: Self-asserted source
Catherine Oikonomou

Bdellovibrio predation cycle characterized at nanometre-scale resolution with cryo-electron tomography.

Nature microbiology
2023-06-22 | Journal article | Author
Contributors: Mohammed Kaplan; Yi-Wei Chang; Catherine Oikonomou; Nicolas WJ; Jewett AI; Kreida S; Dutka P; Rettberg LA; Maggi S; Grant Jensen
Source: Self-asserted source
Catherine Oikonomou

A novel widespread bacterial structure related to the flagellar type III secretion system

2021-09 | Preprint
Contributors: Kaplan M; Oikonomou CM; Wood CR; Chreifi G; Ghosal D; Dobro MJ; Yao Q; McDowall A; Briegel A; Beeby M et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

In situ imaging of bacterial outer membrane projections and associated protein complexes using electron cryo-tomography.

eLife
2021-09 | Journal article
Contributors: Kaplan M; Chreifi G; Metskas LA; Liedtke J; Wood CR; Oikonomou CM; Nicolas WJ; Subramanian P; Zacharoff LA; Wang Y et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

<i>The Atlas of Bacterial & Archaeal Cell Structure</i>: an Interactive Open-Access Microbiology Textbook.

Journal of microbiology & biology education
2021-08 | Journal article
Contributors: Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

In situ imaging of bacterial membrane projections and associated protein complexes using electron cryo-tomography

2021-07 | Preprint
Contributors: Kaplan M; Chreifi G; Metskas LA; Liedtke J; Wood CR; Oikonomou CM; Nicolas WJ; Subramanian P; Zacharoff LA; Wang Y et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

A cryo-electron tomography workflow reveals protrusion-mediated shedding on injured plasma membrane.

Science advances
2021-03 | Journal article
Contributors: Mageswaran SK; Yang WY; Chakrabarty Y; Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Simulations of Proposed Mechanisms of FtsZ-Driven Cell Constriction.

Journal of bacteriology
2021-01 | Journal article
Contributors: Nguyen LT; Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Atlas of Bacterial and Archaeal Cell Structure

Caltech Library
2020 | Book
Source: Self-asserted source
Catherine Oikonomou

Plasma membrane damage removal by F-actin-mediated shedding from repurposed filopodia

2019-12 | Preprint
Contributors: Mageswaran SK; Yang WY; Chakrabarty Y; Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Simulations of proposed mechanisms of FtsZ-driven cell constriction

2019-08 | Preprint
Contributors: Nguyen LT; Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

In situ imaging of the bacterial flagellar motor disassembly and assembly processes.

The EMBO journal
2019-05 | Journal article
Contributors: Kaplan M; Subramanian P; Ghosal D; Oikonomou CM; Pirbadian S; Starwalt-Lee R; Mageswaran SK; Ortega DR; Gralnick JA; El-Naggar MY et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

ETDB-Caltech: A blockchain-based distributed public database for electron tomography.

PloS one
2019-04 | Journal article
Contributors: Ortega DR; Oikonomou CM; Ding HJ; Rees-Lee P; Alexandria; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Electron Cryotomography of Bacterial Secretion Systems.

Microbiology spectrum
2019-03 | Journal article
Contributors: Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Simulations suggest a constrictive force is required for Gram-negative bacterial cell division.

Nature communications
2019-03 | Journal article
Contributors: Nguyen LT; Oikonomou CM; Ding HJ; Kaplan M; Yao Q; Chang YW; Beeby M; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The presence and absence of periplasmic rings in bacterial flagellar motors correlates with stator type.

eLife
2019-01 | Journal article
Contributors: Kaplan M; Ghosal D; Subramanian P; Oikonomou CM; Kjaer A; Pirbadian S; Ortega DR; Briegel A; El-Naggar MY; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

ETDB-Caltech: a blockchain-based distributed public database for electron tomography

2018-10 | Preprint
Contributors: Ortega DR; Oikonomou CM; Ding HJ; Rees-Lee P; Alexandria; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Simulations suggest a constrictive force is required for Gram-negative bacterial cell division

2018-09 | Preprint
Contributors: Nguyen LT; Oikonomou CM; Ding HJ; Kaplan M; Yao Q; Chang Y; Beeby M; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Stable sub-complexes observedin situsuggest a modular assembly pathway of the bacterial flagellar motor

2018-07 | Preprint
Contributors: Kaplan M; Subramanian P; Ghosal D; Oikonomou CM; Pirbadian S; Starwalt-Lee R; Gralnick JA; El-Naggar MY; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The structural complexity of the Gammaproteobacteria flagellar motor is related to the type of its torque-generating stators

2018-07 | Preprint
Contributors: Kaplan M; Ghosal D; Subramanian P; Oikonomou CM; Kjær A; Pirbadian S; Ortega DR; El-Naggar MY; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The development of cryo-EM and how it has advanced microbiology.

Nature microbiology
2017-12 | Journal article
Contributors: Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells.

Journal of structural biology
2017-10 | Journal article
Contributors: Carter SD; Mageswaran SK; Farino ZJ; Mamede JI; Oikonomou CM; Hope TJ; Freyberg Z; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Uncharacterized Bacterial Structures Revealed by Electron Cryotomography.

Journal of bacteriology
2017-08 | Journal article
Contributors: Dobro MJ; Oikonomou CM; Piper A; Cohen J; Guo K; Jensen T; Tadayon J; Donermeyer J; Park Y; Solis BA et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Morphology of the archaellar motor and associated cytoplasmic cone in <i>Thermococcus kodakaraensis</i>.

EMBO reports
2017-07 | Journal article
Contributors: Briegel A; Oikonomou CM; Chang YW; Kjær A; Huang AN; Kim KW; Ghosal D; Nguyen HH; Kenny D; Ogorzalek Loo RR et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Cellular Electron Cryotomography: Toward Structural Biology In Situ.

Annual review of biochemistry
2017-04 | Journal article
Contributors: Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Short FtsZ filaments can drive asymmetric cell envelope constriction at the onset of bacterial cytokinesis.

The EMBO journal
2017-04 | Journal article
Contributors: Yao Q; Jewett AI; Chang YW; Oikonomou CM; Beeby M; Iancu CV; Briegel A; Ghosal D; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells

2017-03 | Preprint
Contributors: Carter SD; Mageswaran SK; Farino ZJ; Mamede JI; Oikonomou CM; Hope TJ; Freyberg Z; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Structure of the archaellar motor and associated cytoplasmic cone inThermococcus kodakaraensis

2017-02 | Preprint
Contributors: Briegel A; Oikonomou CM; Chang Y; Kjaer A; Huang AN; Kim KW; Ghosal D; Gunsalus RP; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Uncharacterized bacterial structures revealed by electron cryotomography

2017-02 | Preprint
Contributors: Dobro MJ; Oikonomou CM; Piper A; Cohen J; Guo K; Jensen T; Tadayon J; Donermeyer J; Park Y; Solis BA et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The CDK-APC/C Oscillator Predominantly Entrains Periodic Cell-Cycle Transcription.

Cell
2016-04 | Journal article
Contributors: Rahi SJ; Pecani K; Ondracka A; Oikonomou C; Cross FR
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

A new view into prokaryotic cell biology from electron cryotomography.

Nature reviews. Microbiology
2016-02 | Journal article
Contributors: Oikonomou CM; Chang YW; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The Caltech Tomography Database and Automatic Processing Pipeline.

Journal of structural biology
2015-06 | Journal article
Contributors: Ding HJ; Oikonomou CM; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Structural conservation of chemotaxis machinery across Archaea and Bacteria.

Environmental microbiology reports
2015-04 | Journal article
Contributors: Briegel A; Ortega DR; Huang AN; Oikonomou CM; Gunsalus RP; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

New insights into bacterial chemoreceptor array structure and assembly from electron cryotomography.

Biochemistry
2014-03 | Journal article
Contributors: Briegel A; Wong ML; Hodges HL; Oikonomou CM; Piasta KN; Harris MJ; Fowler DJ; Thompson LK; Falke JJ; Kiessling LL et al.
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Structure of bacterial cytoplasmic chemoreceptor arrays and implications for chemotactic signaling.

eLife
2014-03 | Journal article
Contributors: Briegel A; Ladinsky MS; Oikonomou C; Jones CW; Harris MJ; Fowler DJ; Chang YW; Thompson LK; Armitage JP; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

The mobility of two kinase domains in the Escherichia coli chemoreceptor array varies with signalling state.

Molecular microbiology
2013-07 | Journal article
Contributors: Briegel A; Ames P; Gumbart JC; Oikonomou CM; Parkinson JS; Jensen GJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Rising cyclin-CDK levels order cell cycle events.

PloS one
2011-06 | Journal article
Contributors: Oikonomou C; Cross FR
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Frequency control of cell cycle oscillators.

Current opinion in genetics & development
2010-09 | Journal article
Contributors: Oikonomou C; Cross FR
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Long-term imaging in microfluidic devices.

Methods in molecular biology (Clifton, N.J.)
2010-01 | Journal article
Contributors: Charvin G; Oikonomou C; Cross F
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Origin of irreversibility of cell cycle start in budding yeast.

PLoS biology
2010-01 | Journal article
Contributors: Charvin G; Oikonomou C; Siggia ED; Cross FR
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central

Chordin is required for neural but not axial development in sea urchin embryos.

Developmental biology
2009-01 | Journal article
Contributors: Bradham CA; Oikonomou C; Kühn A; Core AB; Modell JW; McClay DR; Poustka AJ
Source: Self-asserted source
Catherine Oikonomou via Europe PubMed Central