Personal information

Protozoa, Protista, Taxonomy, Nomenclature, Phylogeny, Evolution, Biodiversity informatics, Copyright, Encyclopedia of Life, STEM Storytime readers
Australia, United States, United Kingdom, Ireland

Biography

Taxonomist and biodiversity informatics at Bristol University (UK), the University of Sydney (Australia), Marine Biological Laboratory, Woods Hole (USA), Arizona State University, Tempe, Arizona (USA), and Maple Ferryman.

Activities

Education and qualifications (2)

University of Bristol: Bristol, Bristol, GB

1972 to 1975 | Ph.D. (Zoology)
Education
Source: Self-asserted source
David J. Patterson

Queens University Belfast School of Biological Sciences: Belfast, Belfast, GB

1968 to 1971 | B.Sc., D.Sc.
Education
Source: Self-asserted source
David J. Patterson

Professional activities (2)

Zoological Society of London: London, Camden, GB

1989 | Scientific Medal
Distinction
Source: Self-asserted source
David J. Patterson

Zoological Society of London: London, Camden, GB

1976 | Thomas Henry Huxley Prize
Distinction
Source: Self-asserted source
David J. Patterson

Works (50 of 137)

Items per page:
Page 1 of 3

Two new species of the genus Leptomyxa (Goodey, 1915) – Leptomyxa botanica n. sp. and Leptomyxa monrepos n. sp. from the soil habitats of Northwestern Russia

European Journal of Protistology
2023 | Journal article
EID:

2-s2.0-85176605770

Part of ISSN: 16180429 09324739
Contributors: Kulishkin, N.S.; Smirnov, A.V.; Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Colors in Nature

Maple Ferryman
2023-05 | Book | Writing - review & editing
Contributors: David J. Patterson
Source: Self-asserted source
David J. Patterson

Kinopus chlorellivorus gen. nov., sp. nov. (Vampyrellida, Rhizaria), a New Algivorous Protist Predator Isolated from Large-Scale Outdoor Cultures of Chlorella sorokiniana

Applied and Environmental Microbiology
2022 | Journal article
EID:

2-s2.0-85142918956

Part of ISSN: 10985336 00992240
Contributors: Zhang, H.; Patterson, D.J.; He, Y.; Wang, H.; Yuan, D.; Hu, Q.; Gong, Y.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

The scope and scale of the life sciences (‘Nature’s envelope’)

Research Ideas and Outcomes
2022-11-10 | Journal article
Contributors: David Patterson
Source: check_circle
Crossref

Improving the discoverability of biodiversity data using the Global Names Finder

Biodiversity Information Science and Standards
2022-10-12 | Journal article
Contributors: Anne Thessen; Dmitry Mozzherin; David Shorthouse; David Patterson
Source: check_circle
Crossref

The scope and scale of the life sciences (‘Nature’s envelope’)

2022-10-10 | Preprint
Contributors: David J. Patterson
Source: check_circle
Crossref

From reductionism to reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences

PLoS Biology
2021 | Journal article
EID:

2-s2.0-85103533001

Part of ISSN: 15457885 15449173
Contributors: Thessen, A.E.; Bogdan, P.; Patterson, D.J.; Casey, T.M.; Hinojo-Hinojo, C.; De Lange, O.; Haendel, M.A.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Finding scientific names in Biodiversity Heritage Library, or how to shrink Big Data

Biodiversity Information Science and Standards
2019-06-13 | Journal article
Contributors: Dmitry Mozzherin; Alexander Myltsev; David Patterson
Source: check_circle
Crossref

Taxonomy based on science is necessary for global conservation

PLoS Biology
2018 | Journal article
EID:

2-s2.0-85045235618

Part of ISSN: 15457885 15449173
Contributors: Thomson, S.A.; Pyle, R.L.; Ahyong, S.T.; Alonso-Zarazaga, M.; Ammirati, J.; Araya, J.F.; Ascher, J.S.; Audisio, T.L.; Azevedo-Santos, V.M.; Bailly, N. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

"gnparser": A powerful parser for scientific names based on Parsing Expression Grammar

BMC Bioinformatics
2017 | Journal article
EID:

2-s2.0-85020231250

Part of ISSN: 14712105
Contributors: Mozzherin, D.Y.; Myltsev, A.A.; Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)

Journal of Eukaryotic Microbiology
2017 | Journal article
EID:

2-s2.0-85013231271

Part of ISSN: 15507408 10665234
Contributors: Warren, A.; Patterson, D.J.; Dunthorn, M.; Clamp, J.C.; Achilles-Day, U.E.M.; Aescht, E.; Al-Farraj, S.A.; Al-Quraishy, S.; Al-Rasheid, K.; Carr, M. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Copyright and the Use of Images as Biodiversity Data

Research Ideas and Outcomes
2017-03-06 | Journal article
Contributors: Willi Egloff; Donat Agosti; Puneet Kishor; David Patterson; Jeremy Miller
Source: check_circle
Crossref

(276–279) Proposals to provide for registration of new names and nomenclatural acts

Taxon
2016 | Journal article
EID:

2-s2.0-84977490940

Part of ISSN: 19968175 00400262
Contributors: Barkworth, M.E.; Watson, M.; Barrie, F.R.; Belyaeva, I.V.; Chung, R.C.K.; Dašková, J.; Davidse, G.; Dönmez, A.A.; Doweld, A.B.; Dressler, S. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Report of the special committee on registration of algal and plant names (including fossils)

Taxon
2016 | Journal article
EID:

2-s2.0-84977593300

Part of ISSN: 19968175 00400262
Contributors: Barkworth, M.E.; Watson, M.; Barrie, F.R.; Belyaeva, I.V.; Chung, R.C.K.; Dašková, J.; Davidse, G.; Dönmez, A.A.; Doweld, A.B.; Dressler, S. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Copyright and the Use of Images as Biodiversity Data

2016-11-11 | Preprint
Contributors: Willi Egloff; Donat Agosti; Puneet Kishor; David Patterson; Jeremy A. Miller
Source: check_circle
Crossref

Challenges with using names to link digital biodiversity information

Biodiversity Data Journal
2016-05-25 | Journal article
Contributors: David Patterson; Dmitry Mozzherin; David Shorthouse; Anne Thessen
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Data Policy Recommendations for Biodiversity Data. EU BON Project Report

Research Ideas and Outcomes
2016-03-12 | Journal article
Contributors: Willi Egloff; Donat Agosti; David Patterson; Anke Hoffmann; Daniel Mietchen; Puneet Kishor; Lyubomir Penev
Source: check_circle
Crossref

Ciliates - Protists with complex morphologies and ambiguous early fossil record

Marine Micropaleontology
2015 | Journal article
EID:

2-s2.0-84934284951

Part of ISSN: 03778398
Contributors: Dunthorn, M.; Lipps, J.H.; Dolan, J.R.; Saab, M.A.A.; Aescht, E.; Bachy, C.; de Cao, M.S.B.; Berger, H.; Bourland, W.A.; Choi, J.K. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Vernalophrys algivore gen. nov., sp. nov. (Rhizaria: Cercozoa: Vampyrellida), a new algal predator isolated from outdoor mass culture of Scenedesmus dimorphus

Applied and Environmental Microbiology
2015 | Journal article
EID:

2-s2.0-84929863471

Part of ISSN: 10985336 00992240
Contributors: Gong, Y.; Patterson, D.J.; Li, Y.; Hu, Z.; Sommerfeld, M.; Chen, Y.; Hu, Q.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Integrating and visualizing primary data from prospective and legacy taxonomic literature

Biodiversity Data Journal
2015-05-12 | Journal article
Contributors: Jeremy Miller; Donat Agosti; Lyubomir Penev; Guido Sautter; Teodor Georgiev; Terry Catapano; David Patterson; David King; Serrano Pereira; Rutger Vos et al.
Source: check_circle
Crossref

Helping Protists to find their place in a big data world

Acta Protozoologica
2014 | Journal article
EID:

2-s2.0-84895168672

Part of ISSN: 00651583 16890027
Contributors: Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Scientific names of organisms: Attribution, rights, and licensing

BMC Research Notes
2014 | Journal article
EID:

2-s2.0-84893199869

Part of ISSN: 17560500
Contributors: Patterson, D.J.; Egloff, W.; Agosti, D.; Eades, D.; Franz, N.; Hagedorn, G.; Rees, J.A.; Remsen, D.P.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Zoological Nomenclature and Electronic Publication-a reply to Dubois et al. (2013)

Zootaxa
2014 | Journal article
EID:

2-s2.0-84896341100

Part of ISSN: 11755334 11755326
Contributors: Alonso-Zarazaga, M.A.; Ballerio, A.; Bogutskaya, N.G.; Bouchet, P.; Brothers, D.J.; Fautin, D.G.; Grygier, M.J.; Halliday, R.B.; Harvey, M.S.; Kojima, J.-I. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Open exchange of scientific knowledge and European copyright: The case of biodiversity information

ZK
2014-06-06 | Journal article
DOI:

10.3897/zookeys.414.7717

Contributors: Willi Egloff; David Patterson; Donat Agosti; Gregor Hagedorn
Source: Self-asserted source
David J. Patterson via Crossref Metadata Search
grade
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Fine structure of Telonema subtilis Griessmann, 1913: a flagellate with a unique cytoskeletal structure among eukaryotes.

2013-07 | Journal article
DOI:

10.1016/j.protis.2013.04.004

PMID:

23796965

Contributors: Yabuki A; Eikrem W; Takishita K; Patterson DJ
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Evolution of Archamoebae: morphological and molecular evidence for pelobionts including Rhizomastix, Entamoeba, Iodamoeba, and Endolimax.

2013-05 | Journal article
DOI:

10.1016/j.protis.2012.11.005

PMID:

23312407

Contributors: Ptáčková E; Kostygov AY; Chistyakova LV; Falteisek L; Frolov AO; Patterson DJ; Walker G; Cepicka I
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
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Transcriptomics and microbial eukaryote diversity: a way forward.

2012-12 | Journal article
DOI:

10.1016/j.tree.2012.08.011

PMID:

22940223

Contributors: Murray SA; Patterson DJ; Thessen AE
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Biological nomenclature terms for facilitating communication in the naming of organisms.

2012 | Journal article
DOI:

10.3897/zookeys.192.3347

PMID:

22639540

PMC:

PMC3349063

Contributors: David J; Garrity GM; Greuter W; Hawksworth DL; Jahn R; Kirk PM; McNeill J; Michel E; Knapp S; Patterson DJ et al.
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example.

2012 | Journal article
DOI:

10.1371/journal.pone.0044015

PMID:

22952856

PMC:

PMC3431360

Contributors: Thessen AE; Patterson DJ; Murray SA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Identity of epibiotic bacteria on symbiontid euglenozoans in O 2-depleted marine sediments: Evidence for symbiont and host co-evolution

ISME Journal
2011 | Journal article
DOI:

10.1038/ismej.2010.121

Contributors: Edgcomb, V.P.; Breglia, S.A.; Yubuki, N.; Beaudoin, D.; Patterson, D.J.; Leander, B.S.; Bernhard, J.M.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Data issues in the life sciences.

2011 | Journal article
DOI:

10.3897/zookeys.150.1766

PMID:

22207805

PMC:

PMC3234430

Contributors: Thessen AE; Patterson DJ
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Names are key to the big new biology

Trends in Ecology and Evolution
2010 | Journal article
DOI:

10.1016/j.tree.2010.09.004

Contributors: Patterson, D.J.; Cooper, J.; Kirk, P.M.; Pyle, R.L.; Remsen, D.P.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.

2010-10 | Journal article
DOI:

10.1093/sysbio/syq037

PMID:

20656852

PMC:

PMC2950834

Contributors: Parfrey LW; Grant J; Tekle YI; Lasek-Nesselquist E; Morrison HG; Sogin ML; Patterson DJ; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Future Taxonomy

Systema Naturae 250 - The Linnaean Ark
2010-02 | Other
DOI:

10.1201/ebk1420095012-c11

Contributors: David Patterson
Source: Self-asserted source
David J. Patterson via Crossref Metadata Search

Ecology. Seeing the big picture on microbe distribution.

2009-09 | Journal article
DOI:

10.1126/science.1179690

PMID:

19762632

Contributors: Patterson DJ
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles.

2009-08 | Journal article
DOI:

10.1016/j.protis.2009.01.001

PMID:

19282238

Contributors: Grant J; Tekle YI; Anderson OR; Patterson DJ; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Principles for a names-based cyberinfrastructure to serve all of biology

Zootaxa
2008 | Journal article
Contributors: Patterson, D.J.; Faulwetter, S.; Shipunov, A.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Proposed amendment of Articles 8, 9, 10, 21 and 78 of the International Code of Zoological Nomenclature to expand and refine methods of publication

Zoological Journal of the Linnean Society
2008 | Journal article
DOI:

10.1111/j.1096-3642.2008.00518.x

Contributors: Brothers, D.J.; Michel, E.; Rosenberg, G.; Krell, F.; Alonso-Zarazaga, M.; Bogutskaya, N.G.; Bouchet, P.; Fautin, D.G.; Grygier, M.J.; Halliday, B. et al.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

The encyclopedia of life - Not just another web encyclopedia

Limnology and Oceanography Bulletin
2008 | Journal article
Contributors: Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU-rDNA.

2008-04 | Journal article
DOI:

10.1016/j.ympev.2007.11.015

PMID:

18180171

Contributors: Tekle YI; Grant J; Anderson OR; Nerad TA; Cole JC; Patterson DJ; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Broadly sampled multigene trees of eukaryotes.

2008 | Journal article
DOI:

10.1186/1471-2148-8-14

PMID:

18205932

PMC:

PMC2249577

Contributors: Yoon HS; Grant J; Tekle YI; Wu M; Chaon BC; Cole JC; Logsdon JM Jr; Patterson DJ; Bhattacharya D; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
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Classifying protists

Microbiology Today
2007 | Journal article
Contributors: Patterson, D.J.; Bhattacharya, D.; Cole, J.; Dunthorn, M.; Logsdon, J.; Katz, L.; Parfrey, L.W.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

The origin and diversification of eukaryotes

Planets and Life: The Emerging Science of Astrobiology
2007 | Book chapter
EID:

2-s2.0-85142577421

Contributors: Sogin, M.L.; Patterson, D.J.; McArthur, A.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

A multigene analysis of Corallomyxa tenera sp. nov. suggests its membership in a clade that includes Gromia, Haplosporidia and Foraminifera.

2007-10 | Journal article
DOI:

10.1016/j.protis.2007.05.002

PMID:

17611149

Contributors: Tekle YI; Grant J; Cole JC; Nerad TA; Anderson OR; Patterson DJ; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

uBioRSS: tracking taxonomic literature using RSS.

2007-06 | Journal article
DOI:

10.1093/bioinformatics/btm109

PMID:

17392332

Contributors: Leary PR; Remsen DP; Norton CN; Patterson DJ; Sarkar IN
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎

Bysmatrum teres sp. nov., a new sand-dwelling dinoflagellate from north-western Australia

Phycologia
2006 | Journal article
Contributors: Murray, S.; Hoppenrath, M.; Larsen, J.; Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Phylogenetics of Rhinodinium broomeense gen. et sp. nov., a peridinioid, sand-dwelling dinoflagellate (Dinophyceae)

Journal of Phycology
2006 | Journal article
DOI:

10.1111/j.1529-8817.2006.00241.x

Contributors: Murray, S.; Hoppenrath, M.; Preisfeld, A.; Larsen, J.; Yoshimatsu, S.; Toriumi, S.; Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Taxonomic informatics tools for the electronic Nomenclator Zoologicus

Biological Bulletin
2006 | Journal article
DOI:

10.2307/4134533

Contributors: Remsen, D.P.; Norton, C.; Patterson, D.J.
Source: Self-asserted source
David J. Patterson via Scopus - Elsevier

Evaluating support for the current classification of eukaryotic diversity.

2006-12 | Journal article
DOI:

10.1371/journal.pgen.0020220

PMID:

17194223

PMC:

PMC1713255

Contributors: Parfrey LW; Barbero E; Lasser E; Dunthorn M; Bhattacharya D; Patterson DJ; Katz LA
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 3)‎

Taxonomic indexing--extending the role of taxonomy.

2006-06 | Journal article
DOI:

10.1080/10635150500541680

PMID:

16861205

Contributors: Patterson DJ; Remsen D; Marino WA; Norton C
Source: Self-asserted source
David J. Patterson via Europe PubMed Central
grade
Preferred source (of 2)‎
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