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RNA editing, Bioinformatics, Python

Activities

Employment (3)

Università degli Studi di Bari Aldo Moro: Bari, Puglia, IT

Postdoc (Dipartimento di Bioscienze, Biotecnologie e Ambiente)
Employment
Source: Self-asserted source
Claudio Lo Giudice

Istituto di Biomembrane, Bioenergetica e Biotecnologie Molecolari Consiglio Nazionale delle Ricerche: Bari, Puglia, IT

Postdoc
Employment
Source: Self-asserted source
Claudio Lo Giudice

Istituto di Tecnologie Biomediche Consiglio Nazionale delle Ricerche Sede di Bari: Bari, Puglia, IT

2023-06-01 to present | Technologist
Employment
Source: Self-asserted source
Claudio Lo Giudice

Works (19)

ADAR RNA editing on antisense RNAs results in apparent U-to-C base changes on overlapping sense transcripts

Frontiers in Cell and Developmental Biology
2023-01-06 | Journal article
Part of ISSN: 2296-634X
Contributors: Riccardo Pecori; Isabel Chillón; Claudio Lo Giudice; Annette Arnold; Sandra Wüst; Marco Binder; Marco Marcia; Ernesto Picardi; Fotini Nina Papavasiliou
Source: Self-asserted source
Claudio Lo Giudice

Comparative transcriptomic profiling of peach and nectarine cultivars reveals cultivar-specific responses to chilled postharvest storage

Frontiers in Plant Science
2022-11-25 | Journal article
Part of ISSN: 1664-462X
Contributors: Antonella Muto; Leonardo Bruno; Maria Letizia Madeo; Richard Ludlow; Michele Ferrari; Louise Stimpson; Claudio LoGiudice; Ernesto Picardi; Antonio Ferrante; Luisa Pasti et al.
Source: Self-asserted source
Claudio Lo Giudice

UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions

Nucleic Acids Research
2022-11-18 | Journal article
Part of ISSN: 0305-1048
Part of ISSN: 1362-4962
Contributors: Claudio Lo Giudice; Claudio Lo Giudice; Federico Zambelli; MATTEO CHIARA; Giulio Pavesi; Marco Antonio Tangaro; Ernesto Picardi; Graziano Pesole
Source: Self-asserted source
Claudio Lo Giudice

Yeast as a Model to Unravel New BRCA2 Functions in Cell Metabolism

Frontiers in Oncology
2022-06-06 | Journal article
Part of ISSN: 2234-943X
Source: Self-asserted source
Claudio Lo Giudice

A Machine Learning Approach to Parkinson’s Disease Blood Transcriptomics

Genes
2022-04-21 | Journal article
Contributors: Ester Pantaleo; Alfonso Monaco; Nicola Amoroso; Angela Lombardi; Loredana Bellantuono; Daniele Urso; Claudio Lo Giudice; Ernesto Picardi; Benedetta Tafuri; Salvatore Nigro et al.
Source: check_circle
Crossref

A primer on machine learning techniques for genomic applications

Computational and Structural Biotechnology Journal
2021 | Journal article
Part of ISSN: 2001-0370
Source: Self-asserted source
Claudio Lo Giudice

Databases for RNA Editing Collections

Methods in Molecular Biology
2021 | Book chapter
Part of ISBN: 9781071613061
Part of ISBN: 9781071613078
Part of ISSN: 1064-3745
Part of ISSN: 1940-6029
Source: Self-asserted source
Claudio Lo Giudice

The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms

[]
2021-11-24 | Preprint
Contributors: Claudio Lo Giudice
Source: Self-asserted source
Claudio Lo Giudice

High-Throughput Sequencing to Detect DNA-RNA Changes.

Methods in molecular biology (Clifton, N.J.)
2021-01-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.

Nucleic acids research
2021-01-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

RNA Editing Detection in HPC Infrastructures.

Methods in molecular biology (Clifton, N.J.)
2021-01-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

Nature Protocols
2020 | Journal article
EID:

2-s2.0-85078417121

Contributors: Lo Giudice, C.; Tangaro, M.A.; Pesole, G.; Picardi, E.
Source: Self-asserted source
Claudio Lo Giudice via Scopus - Elsevier
grade
Preferred source (of 2)‎

Quantifying RNA Editing in Deep Transcriptome Datasets.

Frontiers in genetics
2020-03-06 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

RNA editing in plants: A comprehensive survey of bioinformatics tools and databases

Plant Physiology and Biochemistry
2019 | Journal article
EID:

2-s2.0-85061060476

Contributors: Lo Giudice, C.; Hernández, I.; Ceci, L.R.; Pesole, G.; Picardi, E.
Source: Self-asserted source
Claudio Lo Giudice via Scopus - Elsevier

REDIdb 3.0: A comprehensive collection of RNA editing events in plant organellar genomes

Frontiers in Plant Science
2018 | Journal article
EID:

2-s2.0-85045432058

Contributors: Lo Giudice, C.; Pesole, G.; Picardi, E.
Source: Self-asserted source
Claudio Lo Giudice via Scopus - Elsevier

REDIportal: a comprehensive database of A-to-I RNA editing events in humans.

Nucleic acids research
2016-09-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

MicroRNA signatures predict dysregulated vitamin D receptor and calcium pathways status in limb girdle muscle dystrophies (LGMD) 2A/2B.

Cell biochemistry and function
2016-08-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

Meningiomas and Proteomics: Focus on New Potential Biomarkers and Molecular Pathways.

Cancer genomics & proteomics
2016-01-01 | Journal article
Source: Self-asserted source
Claudio Lo Giudice

T.P.40 Implication of SIRT1 and its downstream pathways in dystrophic process

Neuromuscular Disorders
2012-10 | Journal article
Part of ISSN: 0960-8966
Source: Self-asserted source
Claudio Lo Giudice

Peer review (5 reviews for 4 publications/grants)

Review activity for Functional & integrative genomics. (2)
Review activity for Journal of translational medicine. (1)
Review activity for PLoS computational biology. (1)
Review activity for Rice. (1)