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Scopus Author ID: 57203162317
Loop profile: 2917699

Keywords

single-cell, cell fate decision, immunity, meniscus, spatiotemporal, multiomics, machine learning, drug design, innate lymphoid cells

Countries

United States

Activities

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Employment (1)

Stanford University: Stanford, US

2024-05-22 to present | Postdoc Researcher (School of Medicine)
Employment
Source: Self-asserted source
Sijie Chen

Education and qualifications (1)

Tsinghua University: Beijing, Beijing, CN

2016-08-15 to 2023-06-28 | Ph.D Student (Department of Automation)
Education
Source: Self-asserted source
Sijie Chen

Professional activities (2)

International Society for Computational Biology: Bethesda, US

Membership
Source: Self-asserted source
Sijie Chen

American Heart Association: Dallas, US

Membership
Source: Self-asserted source
Sijie Chen

Funding (1)

基于肺癌精准靶向治疗的基因影像组学研究

2019-01-01 to 2022-12-31 | Grant
National Natural Science Foundation of China (Beijing, CN)
URL: https://app.dimensions.ai/details/grant/grant.8879038
GRANT_NUMBER: 81872510
Source: Self-asserted source
Sijie Chen via DimensionsWizard

Works (14)

MorPhiC Consortium: towards functional characterization of all human genes.

Nature
2025 | Journal article
DOI: 10.1038/s41586-024-08243-w
PMC: 9903716
PMID: 39939790
Part of ISSN: 1476-4687
Contributors: Mazhar Adli; Laralynne Przybyla; Tony Burdett; Paul W Burridge; Pilar Cacheiro; Howard Y Chang; Jesse M Engreitz; Luke A Gilbert; William J Greenleaf; Li Hsu et al.
Source: check_circle
Stanford University

Reciprocal regulation of T follicular helper cells and dendritic cells drives colitis development

Nature Immunology
2024-08 | Journal article
DOI: 10.1038/s41590-024-01882-1
Contributors: Xue Bai; Sijie Chen; Xinxin Chi; Bowen Xie; Xinyi Guo; Han Feng; Peng Wei; Di Zhang; Shan Xie; Tian Xie et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features.

European radiology
2023 | Journal article
DOI: 10.1007/s00330-022-09055-0
PMID: 36001124
Part of ISSN: 1432-1084
Contributors: Jiaqi Li; Zhenbin Qiu; Chao Zhang; Sijie Chen; Mengmin Wang; Qiuchen Meng; Haiming Lu; Lei Wei; Hairong Lv; Wenzhao Zhong et al.
Source: check_circle
Stanford University

Dynamic Regulation of Innate Lymphoid Cell Development During Ontogeny

2023-11-04 | Preprint
DOI: 10.1101/2023.11.01.565141
Contributors: Tao Wu; Sijie Chen; Jie Ma; Xinyi Zhu; Maocai Luo; Yuanhao Wang; Yujie Tian; Qingqing Sun; Xiaohuan Guo; Jianhong Zhang et al.
Source: check_circle
Crossref

Reciprocal Regulation of T Follicular Helper Cells and Dendritic Cells Drives Chronic Colitis Development

2023-06-21 | Preprint
DOI: 10.21203/rs.3.rs-3033532/v1
Contributors: Xue Bai; Sijie Chen; Xinxin Chi; Bowen Xie; Xinyi Guo; Han Feng; Peng Wei; Di Zhang; Shan Xie; Mengting Gou et al.
Source: check_circle
Crossref

A generic reference defined by consensus peaks for scATAC-seq data analysis

2023-06-01 | Preprint
DOI: 10.1101/2023.05.30.542889
Contributors: Qiuchen Meng; Xinze Wu; Wenchang Chen; Yubo Zhao; Chen Li; Zheng Wei; Jiaqi Li; Xi Xi; Sijie Chen; Catherine Zhang et al.
Source: check_circle
Crossref

Intestinal toxicity to CTLA-4 blockade driven by IL-6 and myeloid infiltration

Journal of Experimental Medicine
2023-02-06 | Journal article
DOI: 10.1084/jem.20221333
Contributors: Yifan Zhou; Yusra B. Medik; Bhakti Patel; Daniel B. Zamler; Sijie Chen; Thomas Chapman; Sarah Schneider; Elizabeth M. Park; Rachel L. Babcock; Taylor T. Chrisikos et al.
Source: check_circle
Crossref
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Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study.

eLife
2022-12-22 | Journal article
DOI: 10.7554/eLife.79585
PMID: 36548025
PMC: PMC9779791
Part of ISSN: 2050-084X
Contributors: Weili Fu; Sijie Chen; Runze Yang; Chen Li; Haoxiang Gao; Jian Li; Xuegong Zhang
Source: check_circle
Stanford University

hECA: The cell-centric assembly of a cell atlas

iScience
2022-05 | Journal article
DOI: 10.1016/j.isci.2022.104318
Contributors: Sijie Chen; Yanting Luo; Haoxiang Gao; Fanhong Li; Yixin Chen; Jiaqi Li; Renke You; Minsheng Hao; Haiyang Bian; Xi Xi et al.
Source: check_circle
Crossref
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Toward a unified information framework for cell atlas assembly

National Science Review
2022-03-23 | Journal article
DOI: 10.1093/nsr/nwab179
Contributors: Sijie Chen; Yanting Luo; Haoxiang Gao; Fanhong Li; Jiaqi Li; Yixin Chen; Renke You; Hairong Lv; Kui Hua; Rui Jiang et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Using DenseFly algorithm for cell searching on massive scRNA-seq datasets

BMC Genomics
2020-12 | Journal article
DOI: 10.1186/s12864-020-6651-8
Part of ISSN: 1471-2164
Source: Self-asserted source
Sijie Chen

Pixel-Level Clustering Reveals Intra-Tumor Heterogeneity in Non-Small Cell Lung Cancer

2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2019-11 | Conference paper
DOI: 10.1109/bibm47256.2019.8983174
Part of ISBN: 9781728118673
Source: Self-asserted source
Sijie Chen

A new statistic for efficient detection of repetitive sequences

Bioinformatics
2019-11-01 | Journal article
DOI: 10.1093/bioinformatics/btz262
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Sijie Chen
grade
Preferred source (of 3)‎

Comprehensive simulation of metagenomic sequencing data with non-uniform sampling distribution

Quantitative Biology
2018-06 | Journal article
DOI: 10.1007/s40484-018-0142-9
Part of ISSN: 2095-4689
Part of ISSN: 2095-4697
Source: Self-asserted source
Sijie Chen

Peer review (22 reviews for 7 publications/grants)

Review activity for Cancers. (1)
Review activity for Cells. (5)
Review activity for International journal of molecular sciences. (11)
Review activity for iScience. (2)
Review activity for Nature communications (1)
Review activity for Patterns. (1)
Review activity for PLoS computational biology. (1)
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