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ResearcherID: F-2494-2016
Scopus Author ID: 15925392700

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Page 1 of 2

Curated mode-of-action data and effect concentrations for chemicals relevant for the aquatic environment

Scientific Data
2024 | Journal article
DOI: 10.1038/s41597-023-02904-7
EID:

2-s2.0-85181925976

Part of ISSN: 20524463
Contributors: Kramer, L.; Schulze, T.; Klüver, N.; Altenburger, R.; Hackermüller, J.; Krauss, M.; Busch, W.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Unveiling the dynamics of acetylation and phosphorylation in SGBS and 3T3-L1 adipogenesis

iScience
2024 | Journal article
DOI: 10.1016/j.isci.2024.109711
EID:

2-s2.0-85193943529

Part of ISSN: 25890042
Contributors: Aldehoff, A.S.; Karkossa, I.; Goerdeler, C.; Krieg, L.; Schor, J.; Engelmann, B.; Wabitsch, M.; Landgraf, K.; Hackermüller, J.; Körner, A. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

A data-derived reference mixture representative of European wastewater treatment plant effluents to complement mixture assessment

Environment International
2023 | Journal article
DOI: 10.1016/j.envint.2023.108155
EID:

2-s2.0-85171600628

Part of ISSN: 18736750 01604120
Contributors: Beckers, L.-M.; Altenburger, R.; Brack, W.; Escher, B.I.; Hackermüller, J.; Hassold, E.; Illing, G.; Krauss, M.; Krüger, J.; Michaelis, P. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

A Data-Derived Reference Mixture Representative of European Wastewater Treatment Plant Effluents to Complement Mixture Assessment

SSRN
2023 | Other
DOI: 10.2139/ssrn.4477161
EID:

2-s2.0-85162032624

Part of ISSN: 15565068
Contributors: Beckers, L.-M.; Altenburger, R.; Brack, W.; Escher, B.I.; Hackermüller, J.; Hassold, E.; Illing, G.; Krauss, M.; Krüger, J.; Michaelis, P. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Assessing the Influence of Propylthiouracil and Phenytoin on the Metabolomes of the Thyroid, Liver, and Plasma in Rats

Metabolites
2023 | Journal article
DOI: 10.3390/metabo13070847
EID:

2-s2.0-85166280948

Part of ISSN: 22181989
Contributors: Wang, Z.; Haange, S.-B.; Haake, V.; Huisinga, M.; Kamp, H.; Buesen, R.; Schubert, K.; Canzler, S.; Hackermüller, J.; Rolle-Kampczyk, U. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier
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deepFPlearn<sup>1</sup>: enhancing toxicity prediction across the chemical universe using graph neural networks

Bioinformatics
2023 | Journal article
DOI: 10.1093/bioinformatics/btad713
EID:

2-s2.0-85180006565

Part of ISSN: 13674811 13674803
Contributors: Soulios, K.; Scheibe, P.; Bernt, M.; Hackermüller, J.; Schor, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Reliability of human retina organoid generation from hiPSC-derived neuroepithelial cysts

Frontiers in Cellular Neuroscience
2023 | Journal article
DOI: 10.3389/fncel.2023.1166641
EID:

2-s2.0-85174799104

Part of ISSN: 16625102
Contributors: Carido, M.; Völkner, M.; Steinheuer, L.M.; Wagner, F.; Kurth, T.; Dumler, N.; Ulusoy, S.; Wieneke, S.; Norniella, A.V.; Golfieri, C. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Systems toxicology to advance human and environmental hazard assessment: A roadmap for advanced materials

Nano Today
2023-02 | Journal article
DOI: 10.1016/j.nantod.2022.101735
Part of ISSN: 1748-0132
Contributors: M.J.B. Amorim; W. Peijnenburg; D. Greco; L.A. Saarimäki; V.I. Dumit; A. Bahl; A. Haase; L. Tran; J. Hackermüller; S. Canzler et al.
Source: Self-asserted source
Jörg Hackermüller
grade
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Preserving Cluster Features in Imputing High Dimensional Data with Extensive Missing Rate

Proceedings - 2022 IEEE International Conference on Big Data, Big Data 2022
2022 | Conference paper
DOI: 10.1109/BigData55660.2022.10020732
EID:

2-s2.0-85147943115

Part of ISBN: 9781665480451
Contributors: Lai, C.; Poschen, C.; Steinheuer, L.M.; Hackermuller, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids

Nature Communications
2022-10-19 | Journal article | Author
DOI: 10.1038/s41467-022-33848-y
Part of ISSN: 2041-1723
Contributors: Manuela Völkner; Felix Wagner; Lisa Maria Steinheuer; Madalena Carido; Thomas Kurth; Ali Yazbeck; Jana Schor; Stephanie Wieneke; Lynn Jenny Alix Ebner; Claudia Del Toro Runzer et al.
Source: Self-asserted source
Jörg Hackermüller
grade
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AI for predicting chemical-effect associations at the chemical universe level—deepFPlearn

Briefings in Bioinformatics
2022-09-20 | Journal article
DOI: 10.1093/bib/bbac257
Part of ISSN: 1467-5463
Part of ISSN: 1477-4054
Contributors: Jana Schor; Patrick Scheibe; Matthias Bernt; Wibke Busch; Chih Lai; Jörg Hackermüller
Source: Self-asserted source
Jörg Hackermüller
grade
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The EU chemicals strategy for sustainability: an opportunity to develop new approaches for hazard and risk assessment

Archives of Toxicology
2022-08 | Journal article | Author
DOI: 10.1007/s00204-022-03313-2
Part of ISSN: 0340-5761
Part of ISSN: 1432-0738
Contributors: Stefan Scholz; Werner Brack; Beate Isabella Escher; Jörg Hackermüller; Matthias Liess; Martin von Bergen; Lukas Y Wick; Ana Claudia Zenclussen; Rolf Altenburger
Source: Self-asserted source
Jörg Hackermüller
grade
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The Eco‐Exposome Concept: Supporting an Integrated Assessment of Mixtures of Environmental Chemicals

Environmental Toxicology and Chemistry
2022-01 | Journal article | Author
DOI: 10.1002/etc.5242
Part of ISSN: 0730-7268
Part of ISSN: 1552-8618
Contributors: Stefan Scholz; John W. Nichols; Beate Isabella Escher; Gerald T. Ankley; Rolf Altenburger; Brett Blackwell; Werner Brack; Lawrence Burkhard; Timothy W. Collette; Jon A. Doering et al.
Source: Self-asserted source
Jörg Hackermüller
grade
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AI for predicting chemical-effect associations at the chemical universe level - deepFPlearn

bioRxiv
2021 | Other
DOI: 10.1101/2021.06.24.449697
EID:

2-s2.0-85130862154

Part of ISSN: 26928205
Contributors: Schor, J.; Scheibe, P.; Bernt, M.; Busch, W.; Lai, C.; Hackermüller, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Benchmarking scRNA-seq imputation tools with respect to network inference highlights deficits in performance at high levels of sparsity

bioRxiv
2021 | Other
DOI: 10.1101/2021.04.02.438193
EID:

2-s2.0-85106367762

Part of ISSN: 26928205
Contributors: Steinheuer, L.M.; Canzler, S.; Hackermüller, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Unravelling the chemical exposome in cohort studies: routes explored and steps to become comprehensive

Environmental Sciences Europe
2021-12 | Journal article
DOI: 10.1186/s12302-020-00444-0
Part of ISSN: 2190-4707
Part of ISSN: 2190-4715
Source: Self-asserted source
Jörg Hackermüller
grade
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A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation

Frontiers in Immunology
2021-05-24 | Journal article
DOI: 10.3389/fimmu.2021.616967
Part of ISSN: 1664-3224
Source: Self-asserted source
Jörg Hackermüller
grade
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Mouse Retinal Organoid Growth and Maintenance in Longer-Term Culture

Frontiers in Cell and Developmental Biology
2021-04-27 | Journal article
DOI: 10.3389/fcell.2021.645704
Part of ISSN: 2296-634X
Source: Self-asserted source
Jörg Hackermüller
grade
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Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP

Toxicology
2021-01 | Journal article
DOI: 10.1016/j.tox.2020.152652
Part of ISSN: 0300-483X
Source: Self-asserted source
Jörg Hackermüller
grade
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multiGSEA: A GSEA-based pathway enrichment analysis for multi-omics data

bioRxiv
2020 | Other
DOI: 10.1101/2020.07.17.208215
EID:

2-s2.0-85098899685

Part of ISSN: 26928205
Contributors: Canzler, S.; Hackermüller, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data

BMC Bioinformatics
2020-12 | Journal article
DOI: 10.1186/s12859-020-03910-x
Part of ISSN: 1471-2105
Source: Self-asserted source
Jörg Hackermüller
grade
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ProstaTrend—A Multivariable Prognostic RNA Expression Score for Aggressive Prostate Cancer

European Urology
2020-09 | Journal article
DOI: 10.1016/j.eururo.2020.06.001
Part of ISSN: 0302-2838
Source: Self-asserted source
Jörg Hackermüller
grade
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The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer

Cancers
2020-04-30 | Journal article
DOI: 10.3390/cancers12051122
Part of ISSN: 2072-6694
Source: Self-asserted source
Jörg Hackermüller
grade
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Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
2020-03 | Journal article
DOI: 10.1016/j.cbd.2019.100630
Part of ISSN: 1744-117X
Source: Self-asserted source
Jörg Hackermüller
grade
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Alzheimer-related genes show accelerated evolution

Molecular Psychiatry
2020-03-13 | Journal article
DOI: 10.1038/s41380-020-0680-1
Part of ISSN: 1359-4184
Part of ISSN: 1476-5578
Source: Self-asserted source
Jörg Hackermüller
grade
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Prospects and challenges of multi-omics data integration in toxicology

Archives of Toxicology
2020-02 | Journal article
DOI: 10.1007/s00204-020-02656-y
Part of ISSN: 0340-5761
Part of ISSN: 1432-0738
Source: Self-asserted source
Jörg Hackermüller
grade
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MOD-Finder: Identify multi-omics data sets related to defined chemical exposure

arXiv
2019 | Other
DOI: 10.48550/arxiv.1907.06346
EID:

2-s2.0-85170791241

Part of ISSN: 23318422
Contributors: Canzler, S.; Hackermüller, J.; Schor, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

uap: Reproducible and Robust HTS Data Analysis

bioRxiv
2019 | Other
DOI: 10.1101/690438
EID:

2-s2.0-85095622429

Part of ISSN: 26928205
Contributors: Kämpf, C.; Specht, M.; Scholz, A.; Puppel, S.-H.; Doose, G.; Reiche, K.; Schor, J.; Hackermüller, J.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

BMC Genomics
2019-12 | Journal article
DOI: 10.1186/s12864-019-6024-3
Part of ISSN: 1471-2164
Source: Self-asserted source
Jörg Hackermüller
grade
Preferred source (of 2)‎

uap: reproducible and robust HTS data analysis

BMC Bioinformatics
2019-12 | Journal article
DOI: 10.1186/s12859-019-3219-1
Part of ISSN: 1471-2105
Source: Self-asserted source
Jörg Hackermüller
grade
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Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6

Marine Genomics
2019-10 | Journal article
DOI: 10.1016/j.margen.2019.03.002
Part of ISSN: 1874-7787
Source: Self-asserted source
Jörg Hackermüller
grade
Preferred source (of 2)‎

Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking

Biomarkers
2019-04-03 | Journal article
DOI: 10.1080/1354750x.2018.1539769
Part of ISSN: 1354-750X
Part of ISSN: 1366-5804
Source: Self-asserted source
Jörg Hackermüller
grade
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A translational silencing function of MCPIP1/Regnase-1 specified by the target site context

Nucleic Acids Research
2018 | Journal article
DOI: 10.1093/nar/gky106
WOSUID:

WOS:000431895800044
Contributors: Behrens, Gesine; Winzen, Reinhard; Rehage, Nina; Doerrie, Anneke; Barsch, Monika; Hoffmann, Anne; Hackermueller, Joerg; Tiedje, Christopher; Heissmeyer, Vigo; Holtmann, Helmut
Source: Self-asserted source
Jörg Hackermüller via ResearcherID

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA

Nature Communications
2018 | Journal article
DOI: 10.1038/s41467-017-02582-1
WOSUID:

WOS:000422911900003
Contributors: Rehage, Nina; Davydova, Elena; Conrad, Christine; Behrens, Gesine; Maiser, Andreas; Stehklein, Jenny E.; Brenner, Sven; Klein, Juliane; Jeridi, Aicha; Hoffmann, Anne et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications

Journal of Allergy and Clinical Immunology
2018 | Journal article
DOI: 10.1016/j.jaci.2017.03.017
WOSUID:

WOS:000424410800030
Contributors: Jahreis, Susanne; Trump, Saskia; Bauer, Mario; Bauer, Tobias; Thuermann, Loreen; Feltens, Ralph; Wang, Qi; Gu, Lei; Gruetzmann, Konrad; Roeder, Stefan et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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Roquin targets mRNAs in a 3 '-UTR-specific manner by different modes of regulation

Nature Communications
2018 | Journal article
DOI: 10.1038/s41467-018-06184-3
WOSUID:

WOS:000445029700001
Contributors: Essig, Katharina; Kronbeck, Nina; Guimaraes, Joao C.; Lohs, Claudia; Schlundt, Andreas; Hoffmann, Anne; Behrens, Gesine; Brenner, Sven; Kowalska, Joanna; Lopez-Rodriguez, Cristina et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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A generic Transcriptomics Reporting Framework (TRF) for 'omics data processing and analysis

Regulatory Toxicology and Pharmacology
2017 | Journal article
DOI: 10.1016/j.yrtph.2017.11.001
WOSUID:

WOS:000418784500005
Contributors: Gant, Timothy W.; Sauer, Ursula G.; Zhang, Shu-Dong; Chorley, Brian N.; Hackermueller, Joerg; Perdichizzi, Stefania; Tollefsen, Knut E.; Van Ravenzwaay, Ben; Yauk, Carole; Tong, Weida et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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Alzheimer related genes show accelerated evolution

bioRxiv
2017 | Other
DOI: 10.1101/114108
EID:

2-s2.0-85095621446

Part of ISSN: 26928205
Contributors: Nitsche, A.; Reiche, K.; Ueberham, U.; Arnold, C.; Hackermüller, J.; Horn, F.; Stadler, P.F.; Arendt, T.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Applying 'omics technologies in chemicals risk assessment: Report of an ECETOC workshop

Regulatory Toxicology and Pharmacology
2017 | Journal article
DOI: 10.1016/j.yrtph.2017.09.002
WOSUID:

WOS:000418784500002
Contributors: Buesen, Roland; Chorley, Brian N.; Lima, Beatriz da Silva; Daston, George; Deferme, Lize; Ebbels, Timothy; Gant, Timothy W.; Goetz, Amber; Greally, John; Gribaldo, Laura et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies

Standards in Genomic Sciences
2017 | Journal article
DOI: 10.1186/s40793-017-0235-5
EID:

2-s2.0-85011311989
Contributors: Kallies, R.; Kiesel, B.; Schmidt, M.; Kacza, J.; Ghanem, N.; Narr, A.; Zopfi, J.; Wick, L.Y.; Hackermüller, J.; Harms, H. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier
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Framework for the quality assurance of 'omics technologies considering GLP requirements

Regulatory Toxicology and Pharmacology
2017 | Journal article
DOI: 10.1016/j.yrtph.2017.10.007
WOSUID:

WOS:000418784500004
Contributors: Kauffmann, Hans-Martin; Kamp, Hennicke; Fuchs, Regine; Chorley, Brian N.; Deferme, Lize; Ebbels, Timothy; Hackermueller, Joerg; Perdichizzi, Stefania; Poole, Alan; Sauer, Ursula G. et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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From the exposome to mechanistic understanding of chemical-induced adverse effects

Environment International
2017 | Journal article
DOI: 10.1016/j.envint.2016.11.029
EID:

2-s2.0-85010654080
Contributors: Escher, B.I.; Hackermüller, J.; Polte, T.; Scholz, S.; Aigner, A.; Altenburger, R.; Böhme, A.; Bopp, S.K.; Brack, W.; Busch, W. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer

Scientific Reports
2017 | Journal article
DOI: 10.1038/s41598-017-08348-5
WOSUID:

WOS:000407443300024
Contributors: Binder, Stefanie; Hoesler, Nadine; Riedel, Diana; Zipfel, Ivonne; Buschmann, Tilo; Kaempf, Christoph; Reiche, Kristin; Burger, Renate; Gramatzki, Martin; Hackermueller, Joerg et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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The challenge of the application of 'omics technologies in chemicals risk assessment: Background and outlook

Regulatory Toxicology and Pharmacology
2017 | Journal article
DOI: 10.1016/j.yrtph.2017.09.020
EID:

2-s2.0-85029718709
Contributors: Sauer, U.G.; Deferme, L.; Gribaldo, L.; Hackermüller, J.; Tralau, T.; van Ravenzwaay, B.; Yauk, C.; Poole, A.; Tong, W.; Gant, T.W.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

The complete genome of the tetrachloroethene-respiring Epsilonproteobacterium Sulfurospirillum halorespirans

Journal of Biotechnology
2017 | Journal article
DOI: 10.1016/j.jbiotec.2017.06.1197
WOSUID:

WOS:000406000200005
Contributors: Goris, Tobias; Schenz, Benjamin; Zimmermann, Johannes; Lemos, Mikael; Hackermueller, Joerg; Schubert, Torsten; Diekert, Gabriele
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
grade
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Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop

Regulatory Toxicology and Pharmacology
2016 | Journal article
DOI: 10.1016/j.yrtph.2016.09.018
EID:

2-s2.0-84996538592
Contributors: Aigner, A.; Buesen, R.; Gant, T.; Gooderham, N.; Greim, H.; Hackermüller, J.; Hubesch, B.; Laffont, M.; Marczylo, E.; Meister, G. et al.
Source: Self-asserted source
Jörg Hackermüller via Scopus - Elsevier

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci

Human Molecular Genetics
2015 | Journal article
DOI: 10.1093/hmg/ddv194
WOSUID:

WOS:000361315400022
Contributors: Kirsten, Holger; Al-Hasani, Hoor; Holdt, Lesca; Gross, Arnd; Beutner, Frank; Krohn, Knut; Horn, Katrin; Ahnert, Peter; Burkhardt, Ralph; Reiche, Kristin et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus

Journal of Experimental Zoology Part B-Molecular and Developmental Evolution
2014 | Journal article
DOI: 10.1002/jez.b.22560
WOSUID:

WOS:000333980700005
Contributors: Rivarola-Duarte, Lorena; Otto, Christian; Juehling, Frank; Schreiber, Stephan; Bedulina, Daria; Jakob, Lena; Gurkov, Anton; Axenov-Gribanov, Denis; Sahyoun, Abdullah H.; Lucassen, Magnus et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Genome Biology
2014 | Journal article
DOI: 10.1186/gb-2014-15-2-r34
WOSUID:

WOS:000336256600017
Contributors: Hoffmann, Steve; Otto, Christian; Doose, Gero; Tanzer, Andrea; Langenberger, David; Christ, Sabina; Kunz, Manfred; Holdt, Lesca M.; Teupser, Daniel; Hackermueller, Joerg et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

Genome Biology
2014 | Journal article
DOI: 10.1186/gb-2014-15-3-r48
WOSUID:

WOS:000338981300009
Contributors: Hackermueller, Joerg; Reiche, Kristin; Otto, Christian; Hoesler, Nadine; Blumert, Conny; Brocke-Heidrich, Katja; Boehlig, Levin; Nitsche, Anne; Kasack, Katharina; Ahnert, Peter et al.
Source: Self-asserted source
Jörg Hackermüller via ResearcherID
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