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Keywords

Structural Bioinformatics, Structural Glycobiology, Glycoinformatics, Structural Biology

Countries

United Kingdom

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Employment (2)

Exact Sciences (United States): Madison, US

2024-07-01 to present | Bioinformatics Engineer
Employment
Source: Self-asserted source
Haroldas Bagdonas

Scott Logic Ltd: Leeds, West Yorkshire, GB

2023-08-07 to 2024-06-28 | Associate Software Developer (Development)
Employment
Source: Self-asserted source
Haroldas Bagdonas

Education and qualifications (2)

University of York: York, North Yorkshire, GB

2019-10-01 to 2023-09-30 | PhD in Chemistry (York Structural Biology Laboratory (YSBL))
Education
Source: Self-asserted source
Haroldas Bagdonas

University of York: York, North Yorkshire, GB

2015-10-01 to 2019-06-23 | MBiochem Biochemistry (Department of Biology)
Education
Source: Self-asserted source
Haroldas Bagdonas

Works (8)

Monitoring carbohydrate 3D structure quality with the Privateer database

Beilstein Journal of Organic Chemistry
2024-04-24 | Journal article
DOI: 10.3762/bjoc.20.83
Contributors: Jordan S Dialpuri; Haroldas Bagdonas; Lucy C Schofield; Phuong Thao Pham; Lou Holland; Jon Agirre
Source: check_circle
Crossref

Online carbohydrate 3D structure validation with the Privateer web app

Acta Crystallographica Section F Structural Biology Communications
2024-02-01 | Journal article
DOI: 10.1107/S2053230X24000359
Contributors: Jordan S. Dialpuri; Haroldas Bagdonas; Lucy C. Schofield; Phuong Thao Pham; Lou Holland; Paul S. Bond; Filomeno Sánchez Rodríguez; Stuart J. McNicholas; Jon Agirre
Source: check_circle
Crossref

Monitoring carbohydrate 3D structure quality with the Privateer database

2024-01-31 | Preprint
DOI: 10.3762/bxiv.2024.6.v1
Contributors: Jordan S Dialpuri; Haroldas Bagdonas; Lucy C Schofield; Phuong Thao Pham; Lou Holland; Jon Agirre
Source: check_circle
Crossref

Analysis and validation of overall N-glycan conformation in Privateer

Acta Crystallographica Section D Structural Biology
2023-06-01 | Journal article
DOI: 10.1107/S2059798323003510
Contributors: Jordan S. Dialpuri; Haroldas Bagdonas; Mihaela Atanasova; Lucy C. Schofield; Maarten L. Hekkelman; Robbie P. Joosten; Jon Agirre
Source: check_circle
Crossref

The CCP4 suite: integrative software for macromolecular crystallography

Acta Crystallographica Section D Structural Biology
2023-06-01 | Journal article
DOI: 10.1107/S2059798323003595
Contributors: Jon Agirre; Mihaela Atanasova; Haroldas Bagdonas; Charles B. Ballard; Arnaud Baslé; James Beilsten-Edmands; Rafael J. Borges; David G. Brown; J. Javier Burgos-Mármol; John M. Berrisford et al.
Source: check_circle
Crossref

The case for post-predictional modifications in the AlphaFold Protein Structure Database

Nature Structural & Molecular Biology
2021-11 | Journal article
DOI: 10.1038/s41594-021-00680-9
Contributors: Haroldas Bagdonas; Carl A. Fogarty; Elisa Fadda; Jon Agirre
Source: check_circle
Crossref

Leveraging glycomics data in glycoprotein 3D structure validation with Privateer

Beilstein Journal of Organic Chemistry
2020-10-09 | Journal article
DOI: 10.3762/bjoc.16.204
Contributors: Haroldas Bagdonas; Daniel Ungar; Jon Agirre
Source: check_circle
Crossref

Structural glycobiology in the age of electron cryo-microscopy

Current Opinion in Structural Biology
2020-06 | Journal article
DOI: 10.1016/j.sbi.2019.12.003
Contributors: Mihaela Atanasova; Haroldas Bagdonas; Jon Agirre
Source: check_circle
Crossref
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