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University of Cambridge: Cambridge, Cambridgeshire, GB

2008-09-01 to present | Reader (Plant Sciences)
Employment
Source: Self-asserted source
Ian Henderson

Works (50 of 66)

Items per page:
Page 1 of 2

Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs

Nature Plants
2024-09-02 | Journal article
DOI: 10.1038/s41477-024-01773-1
Contributors: Atsushi Shimada; Jonathan Cahn; Evan Ernst; Jason Lynn; Daniel Grimanelli; Ian Henderson; Tetsuji Kakutani; Robert A. Martienssen
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Crossref

Loading the Centromere during Embryogenesis: NASP Functions in de Novo CENH3 Deposition

Plant And Cell Physiology
2024-07-30 | Journal article
DOI: 10.1093/pcp/pcae068
Contributors: Matthew Naish; Ian R Henderson
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Crossref

Analysis of 30 chromosome-levelDrosophilagenome assemblies reveals dynamic evolution of centromeric satellite repeats

2024-06-18 | Preprint
DOI: 10.1101/2024.06.17.599346
Contributors: Daniel Gebert; Amir D. Hay; Jennifer P. Hoang; Adam E. Gibbon; Ian R. Henderson; Felipe Karam Teixeira
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Crossref

MSH2 stimulates interfering and inhibits non-interfering crossovers in response to genetic polymorphism

Nature Communications
2023-10-23 | Journal article
DOI: 10.1038/s41467-023-42511-z
Contributors: Julia Dluzewska; Wojciech Dziegielewski; Maja Szymanska-Lejman; Monika Gazecka; Ian R. Henderson; James D. Higgins; Piotr A. Ziolkowski
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Crossref

TRASH: Tandem Repeat Annotation and Structural Hierarchy

Bioinformatics
2023-05-04 | Journal article
DOI: 10.1093/bioinformatics/btad308
Contributors: Piotr Wlodzimierz; Michael Hong; Ian R Henderson; Can Alkan
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Crossref

MSH2 stimulates interfering and inhibits non-interfering crossovers in response to genetic polymorphism

2023-05-03 | Preprint
DOI: 10.1101/2023.05.03.539183
Contributors: Julia Dluzewska; Wojciech Dziegielewski; Maja Szymanska-Lejman; Monika Gazecka; Ian R. Henderson; James D. Higgins; Piotr A. Ziolkowski
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Crossref

Creating synthetic maize centromeres

Nature Plants
2023-03-16 | Journal article
DOI: 10.1038/s41477-023-01366-4
Contributors: Ian R. Henderson
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Crossref

Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes

Nucleic Acids Research
2022-11-28 | Journal article
DOI: 10.1093/nar/gkac1115
Contributors: Fernando A Rabanal; Maike Gräff; Christa Lanz; Katrin Fritschi; Victor Llaca; Michelle Lang; Pablo Carbonell-Bejerano; Ian Henderson; Detlef Weigel
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Crossref

Differentiated function and localisation of SPO11-1 and PRD3 on the chromosome axis during meiotic DSB formation in Arabidopsis thaliana

PLOS Genetics
2022-07-20 | Journal article
DOI: 10.1371/journal.pgen.1010298
Contributors: Christophe Lambing; Yingxiang Wang; Pallas Kuo; Jaeil Kim; Kim Osman; Amy Leanne Whitbread; Jianhua Yang; Kyuha Choi; F. Chris H. Franklin; Ian R. Henderson
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Crossref

Coexpression of MEIOTIC-TOPOISOMERASE VIB-dCas9 with guide RNAs specific to a recombination hotspot is insufficient to increase crossover frequency in Arabidopsis

G3 Genes|Genomes|Genetics
2022-07-06 | Journal article
DOI: 10.1093/g3journal/jkac105
Contributors: Nataliya E Yelina; Daniel Holland; Sabrina Gonzalez-Jorge; Dominique Hirsz; Ziyi Yang; Ian R Henderson; M Zetka
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Crossref

FANCM promotes class I interfering crossovers and suppresses class II non-interfering crossovers in wheat meiosis

Nature Communications
2022-06-25 | Journal article
DOI: 10.1038/s41467-022-31438-6
Contributors: Stuart D. Desjardins; James Simmonds; Inna Guterman; Kostya Kanyuka; Amanda J. Burridge; Andrew J. Tock; Eugenio Sanchez-Moran; F. Chris H. Franklin; Ian R. Henderson; Keith J. Edwards et al.
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Crossref

Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome

Genome Biology and Evolution
2022-05-03 | Journal article
DOI: 10.1093/gbe/evac059
Contributors: Peter D. Fields; Gus Waneka; Matthew Naish; Michael C. Schatz; Ian R. Henderson; Daniel B. Sloan; Tanja Slotte
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Crossref

Complete sequence of a 641-kb insertion of mitochondrial DNA in the Arabidopsis thaliana nuclear genome

2022-02-22 | Preprint
DOI: 10.1101/2022.02.22.481460
Contributors: Peter D. Fields; Gus Waneka; Matthew Naish; Michael C. Schatz; Ian R. Henderson; Daniel B. Sloan
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Crossref

Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes

2022-02-15 | Preprint
DOI: 10.1101/2022.02.15.480579
Contributors: Fernando A. Rabanal; Maike Gräff; Christa Lanz; Katrin Fritschi; Victor Llaca; Michelle Lang; Pablo Carbonell-Bejerano; Ian Henderson; Detlef Weigel
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Crossref

Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation

Genome Research
2021-09-23 | Journal article
DOI: 10.1101/gr.273672.120
Contributors: Andrew J. Tock; Daniel M. Holland; Wei Jiang; Kim Osman; Eugenio Sanchez-Moran; James D. Higgins; Keith J. Edwards; Cristobal Uauy; F. Chris H. Franklin; Ian R. Henderson
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Crossref

Spatiotemporal control of miR398 biogenesis, via chromatin remodeling and kinase signaling, ensures proper ovule development

The Plant Cell
2021-07-02 | Journal article
DOI: 10.1093/plcell/koab056
Contributors: Hanyang Cai; Liping Liu; Man Zhang; Mengnan Chai; Youmei Huang; Fangqian Chen; Maokai Yan; Zhenxia Su; Ian Henderson; Ravishankar Palanivelu et al.
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Crossref

Meiotic chromosome axis remodelling is critical for meiotic recombination in Brassica rapa

Journal of Experimental Botany
2021-04-02 | Journal article
DOI: 10.1093/jxb/erab035
Contributors: Maria Cuacos; Christophe Lambing; Miguel Pachon-Penalba; Kim Osman; Susan J Armstrong; Ian R Henderson; Eugenio Sanchez-Moran; F Christopher H Franklin; Stefan Heckmann; Anna Dobritsa
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Crossref

MutS homologue 4 and MutS homologue 5 Maintain the Obligate Crossover in Wheat Despite Stepwise Gene Loss following Polyploidization

Plant Physiology
2020-08 | Journal article
DOI: 10.1104/pp.20.00534
Contributors: Stuart D. Desjardins; Daisy E. Ogle; Mohammad A. Ayoub; Stefan Heckmann; Ian R. Henderson; Keith J. Edwards; James D. Higgins
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Crossref

Interacting Genomic Landscapes of REC8-Cohesin, Chromatin, and Meiotic Recombination in Arabidopsis

The Plant Cell
2020-04 | Journal article
DOI: 10.1105/tpc.19.00866
Contributors: Christophe Lambing; Andrew J. Tock; Stephanie D. Topp; Kyuha Choi; Pallas C. Kuo; Xiaohui Zhao; Kim Osman; James D. Higgins; F. Chris H. Franklin; Ian R. Henderson
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Crossref

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features

Genetics
2019-11 | Journal article
DOI: 10.1534/genetics.119.302406
Contributors: Beth A. Rowan; Darren Heavens; Tatiana R. Feuerborn; Andrew J. Tock; Ian R. Henderson; Detlef Weigel
Source: check_circle
Crossref

An ultra high-density Arabidopsis thaliana crossover map that refines the influences of structural variation and epigenetic features

2019-06-10 | Other
DOI: 10.1101/665083
Contributors: Beth A. Rowan; Darren Heavens; Tatiana R. Feuerborn; Andrew J. Tock; Ian R. Henderson; Detlef Weigel
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Crossref

Interhomolog polymorphism shapes meiotic crossover within the Arabidopsis RAC1 and RPP13 disease resistance genes

PLOS Genetics
2018-12-13 | Journal article
DOI: 10.1371/journal.pgen.1007843
Contributors: Heïdi Serra; Avraham Levy; Kyuha Choi; Xiaohui Zhao; Alexander R. Blackwell; Juhyun Kim; Ian R. Henderson
Source: check_circle
Crossref

Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation.

Genome research
2018-03 | Journal article
DOI: 10.1101/gr.227116.117
PMID: 29530927
PMC: PMC5880242
Contributors: Underwood CJ; Choi K; Lambing C; Zhao X; Serra H; Borges F; Simorowski J; Ernst E; Jacob Y; Henderson IR et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Interhomolog polymorphism shapes meiotic crossover within RAC1 and RPP13 disease resistance genes

2018-03 | Other
DOI: 10.1101/290478
OTHER-ID:

PPR16818
Contributors: Serra H; Choi K; Zhao X; Blackwell A; Henderson I
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.

Genome research
2018-03 | Journal article
DOI: 10.1101/gr.225599.117
PMID: 29530928
PMC: PMC5880243
Contributors: Choi K; Zhao X; Tock AJ; Lambing C; Underwood CJ; Hardcastle TJ; Serra H; Kim J; Cho HS; Kim J et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis.

Proceedings of the National Academy of Sciences of the United States of America
2018-02 | Journal article
DOI: 10.1073/pnas.1713071115
PMID: 29463699
PMC: PMC5877939
Contributors: Serra H; Lambing C; Griffin CH; Topp SD; Nageswaran DC; Underwood CJ; Ziolkowski PA; Séguéla-Arnaud M; Fernandes JB; Mercier R et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Modification of meiotic recombination by natural variation in plants.

Journal of experimental botany
2017-11 | Journal article
DOI: 10.1093/jxb/erx306
PMID: 28992351
Contributors: Lawrence EJ; Griffin CH; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Epigenetic activation of meiotic recombination in Arabidopsis centromeres via loss of H3K9me2 and non-CG DNA methylation

2017-07 | Other
DOI: 10.1101/160929
OTHER-ID:

PPR15565
Contributors: Underwood CJ; Choi K; Lambing C; Zhao X; Serra H; Borges F; Simorowski J; Ernst E; Jacob Y; Henderson IR et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Massive crossover elevation via combination of HEI10 and recq4a recq4b during Arabidopsis meiosis

2017-07 | Other
DOI: 10.1101/159764
OTHER-ID:

PPR15900
Contributors: Serra H; Lambing C; Griffin CH; Topp SD; Seguela-Arnaud M; Fernandes J; Mercier R; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis transposons and gene regulatory regions

2017-07 | Other
DOI: 10.1101/160911
OTHER-ID:

PPR15564
Contributors: Choi K; Zhao X; Lambing C; Underwood CJ; Hardcastle TJ; Serra H; Tock AJ; Ziolkowski PA; Yelina NE; Martienssen RA et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Editorial overview: Genome studies and molecular genetics.

Current opinion in plant biology
2017-04 | Journal article
DOI: 10.1016/j.pbi.2017.03.017
PMID: 28416370
Contributors: Schneeberger K; Henderson I
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Genetic and epigenetic variation of transposable elements in Arabidopsis.

Current opinion in plant biology
2017-03 | Journal article
DOI: 10.1016/j.pbi.2017.03.002
PMID: 28343122
PMC: PMC5746046
Contributors: Underwood CJ; Henderson IR; Martienssen RA
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination.

Genes & development
2017-02 | Journal article
DOI: 10.1101/gad.295501.116
PMID: 28223312
PMC: PMC5358726
Contributors: Ziolkowski PA; Underwood CJ; Lambing C; Martinez-Garcia M; Lawrence EJ; Ziolkowska L; Griffin C; Choi K; Franklin FC; Martienssen RA et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Quantification and Sequencing of Crossover Recombinant Molecules from Arabidopsis Pollen DNA.

Methods in molecular biology (Clifton, N.J.)
2017-01 | Journal article
DOI: 10.1007/978-1-4939-6750-6_2
PMID: 28138839
Contributors: Choi K; Yelina NE; Serra H; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Interconnections between meiotic recombination and sequence polymorphism in plant genomes.

The New phytologist
2016-11 | Journal article
DOI: 10.1111/nph.14265
PMID: 27861941
Contributors: Ziolkowski PA; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Regulation of MicroRNA-Mediated Developmental Changes by the SWR1 Chromatin Remodeling Complex.

Plant physiology
2016-04 | Journal article
DOI: 10.1104/pp.16.00332
PMID: 27208270
Contributors: Choi K; Kim J; Müller SY; Oh M; Underwood C; Henderson I; Lee I
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis.

Cell
2015-10 | Journal article
DOI: 10.1016/j.cell.2015.09.032
PMID: 26451488
PMC: PMC5023148
Contributors: Zhai J; Bischof S; Wang H; Feng S; Lee TF; Teng C; Chen X; Park SY; Liu L; Gallego-Bartolome J et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis.

Genes & development
2015-10 | Journal article
DOI: 10.1101/gad.270876.115
PMID: 26494791
PMC: PMC4617981
Contributors: Yelina NE; Lambing C; Hardcastle TJ; Zhao X; Santos B; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Meiotic recombination hotspots - a comparative view.

The Plant journal : for cell and molecular biology
2015-05 | Journal article
DOI: 10.1111/tpj.12870
PMID: 25925869
Contributors: Choi K; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis.

eLife
2015-03 | Journal article
DOI: 10.7554/elife.03708
PMID: 25815584
PMC: PMC4407271
Contributors: Ziolkowski PA; Berchowitz LE; Lambing C; Yelina NE; Zhao X; Kelly KA; Choi K; Ziolkowska L; June V; Sanchez-Moran E et al.
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Epigenetic control of meiotic recombination in plants.

Science China. Life sciences
2015-02 | Journal article
DOI: 10.1007/s11427-015-4811-x
PMID: 25651968
Contributors: Yelina N; Diaz P; Lambing C; Henderson IR
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America
2015-01 | Journal article
DOI: 10.1073/pnas.1423603112
PMID: 25561521
PMC: PMC4311829
Contributors: Zhong X; Hale CJ; Nguyen M; Ausin I; Groth M; Hetzel J; Vashisht AA; Henderson IR; Wohlschlegel JA; Jacobsen SE
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Telomere stability and development of ctc1 mutants are rescued by inhibition of EJ recombination pathways in a telomerase-dependent manner.

Nucleic acids research
2014-10 | Journal article
DOI: 10.1093/nar/gku897
PMID: 25274733
PMC: PMC4231758
Contributors: Amiard S; Olivier M; Allain E; Choi K; Smith-Unna R; Henderson IR; White CI; Gallego ME
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Contrasted Patterns of Crossover and Non-crossover at Arabidopsis thaliana Meiotic Recombination Hotspots

PLoS Genet
2013-11 | Journal article
DOI:

10.1371/journal.pgen.1003922
Contributors: Jan Drouaud; Hossein Khademian; Laurène Giraut; Vanessa Zanni; Sarah Bellalou; Ian R. Henderson; Matthieu Falque; Christine Mézard; Hong Ma
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search

High-throughput analysis of meiotic crossover frequency and interference via flow cytometry of fluorescent pollen in Arabidopsis thaliana

Nat Protoc
2013-10-10 | Journal article
DOI:

10.1038/nprot.2013.131
Contributors: Nataliya E Yelina; Piotr A Ziolkowski; Nigel Miller; Xiaohui Zhao; Krystyna A Kelly; Daniela F Muñoz; David J Mann; Gregory P Copenhaver; Ian R Henderson
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

Nat Genet
2013-09 | Journal article
DOI:

10.1038/ng.2766
Contributors: Kyuha Choi; Xiaohui Zhao; Krystyna A Kelly; Oliver Venn; James D Higgins; Nataliya E Yelina; Thomas J Hardcastle; Piotr A Ziolkowski; Gregory P Copenhaver; F Chris H Franklin et al.
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search

Epigenetic Remodeling of Meiotic Crossover Frequency in Arabidopsis thaliana DNA Methyltransferase Mutants

PLoS Genet
2012-08-02 | Journal article
DOI:

10.1371/journal.pgen.1002844
Contributors: Nataliya E. Yelina; Kyuha Choi; Liudmila Chelysheva; Malcolm Macaulay; Bastiaan de Snoo; Erik Wijnker; Nigel Miller; Jan Drouaud; Mathilde Grelon; Gregory P. Copenhaver et al.
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search

The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana

PLoS Genet
2010-10 | Journal article
DOI:

10.1371/journal.pgen.1001182
Contributors: Ian R. Henderson; Angelique Deleris; William Wong; Xuehua Zhong; Hang Gyeong Chin; Gregory A. Horwitz; Krystyna A. Kelly; Sriharsa Pradhan; Steven E. Jacobsen; Joseph R. Ecker
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search

Accurate sodium bisulfite sequencing in plants.

Epigenetics
2010-01 | Journal article
DOI: 10.4161/epi.5.1.10560
PMID: 20081358
PMC: PMC2829377
Contributors: Henderson IR; Chan SR; Cao X; Johnson L; Jacobsen SE
Source: Self-asserted source
Ian Henderson via Europe PubMed Central

Describing Epigenomic Information in Arabidopsis

Epigenomics
2009 | Other
DOI:

10.1007/978-1-4020-9187-2_10
Contributors: Ian R. Henderson
Source: Self-asserted source
Ian Henderson via Crossref Metadata Search
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