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MetExplore project page
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Loop profile: 133175

Keywords

bioinformatics, metabolomics, metabolic networks, information visualisation, toxicology

Countries

France

Activities

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Employment (3)

Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement Centre Occitanie-Toulouse: Toulouse, Occitanie, FR

2017-01-01 to present | Directeur de Recherche (DR2) - Senior researcher (UMR1331 TOXALIM)
Employment
Source: Self-asserted source
Fabien Jourdan

Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement Centre Occitanie-Toulouse: Toulouse, Occitanie, FR

2010-09-01 to 2016-12-31 | Chargé de Rercherche (CR1) (UMR1331 TOXALIM)
Employment
Source: Self-asserted source
Fabien Jourdan

Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement Centre Occitanie-Toulouse: Toulouse, Occitanie, FR

2005-09-01 to 2010-08-31 | Chargé de Recherche (CR2) (UMR1331 TOXALIM)
Employment
Source: Self-asserted source
Fabien Jourdan

Education and qualifications (2)

Université Paul Sabatier: Toulouse, Midi-Pyrénées, FR

2015-09 | Habilitation à Diriger des Recherches (HDR)
Education
Source: Self-asserted source
Fabien Jourdan

Université de Montpellier: Montpellier, Languedoc-Roussillon, FR

2001-09 to 2004-12 | PhD
Education
Source: Self-asserted source
Fabien Jourdan

Professional activities (5)

Metabolomics Society: Boston, US

2020 to 2022 | Secretary
Service
Source: Self-asserted source
Fabien Jourdan

Metabolomics Society: Boston, US

2019 to 2020 | Board of Director Membre
Service
Source: Self-asserted source
Fabien Jourdan

RFMF (réseau Francophone de Métabolomique et Fluxomique): Toulouse, FR

2015-07-01 to 2019-06-30 | Président
Service
Source: Self-asserted source
Fabien Jourdan

RFMF (Réseau Francophone de Métabolomique et Fluxomique: Toulouse, FR

2010 to 2015 | Board membre
Service
Source: Self-asserted source
Fabien Jourdan

University of Glasgow: Glasgow, Glasgow, GB

2006-09-01 to 2007-08-31 | Visiting researcher (Bioinformatics Research Centre)
Invited position
Source: Self-asserted source
Fabien Jourdan

Funding (5)

New approaches to bridge the gap between genome-scale metabolic networks and untargeted metabolomics – MetClassNet

2020-01-20 to 2023-01-19 | Grant
National Agency for Research (Paris, FR)
URL: https://app.dimensions.ai/details/grant/grant.9466088
GRANT_NUMBER: ANR-19-CE45-0021
Source: Self-asserted source
Fabien Jourdan via DimensionsWizard

Beating Goliath: Generation Of NoveL, Integrated and Internationally Harmonised Approaches for Testing Metabolism Disrupting Compounds

2019-01-01 to 2023-12-31 | Grant
European Commission (Brussels, BE)
URL: https://app.dimensions.ai/details/grant/grant.8104382
GRANT_NUMBER: 825489
Source: Self-asserted source
Fabien Jourdan via DimensionsWizard

PhenoMeNal: A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data

Source: Self-asserted source
Fabien Jourdan via DimensionsWizard

Metabolomic systems biology analysis of cyclic differentiation in trypanosomes – SYSTRYP

Grant
Agence Nationale de la Recherche (Paris, FR)
URL: https://app.dimensions.ai/details/grant/grant.9662589
GRANT_NUMBER: ANR-07-BSYS-0008
Source: Self-asserted source
Fabien Jourdan via DimensionsWizard

New methods and tools for translational metabolomics – EU-Met

Grant
Agence Nationale de la Recherche (Paris, FR)
URL: https://app.dimensions.ai/details/grant/grant.10022158
GRANT_NUMBER: ANR-21-MRS2-0013
Source: Self-asserted source
Fabien Jourdan via DimensionsWizard

Works (50 of 105)

Items per page:
Page 1 of 3

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration

PLOS Computational Biology
2024-03-25 | Journal article
DOI: 10.1371/journal.pcbi.1011814
Contributors: Cecilia Wieder; Christos A. Ouzounis; Juliette Cooke; Clement Frainay; Nathalie Poupin; Russell Bowler; Fabien Jourdan; Katerina J. Kechris; Rachel PJ Lai; Timothy Ebbels
Source: check_circle
Crossref

Genome scale metabolic network modelling for metabolic profile predictions

PLOS Computational Biology
2024-02-22 | Journal article
DOI: 10.1371/journal.pcbi.1011381
Contributors: Juliette Cooke; Anders Wallqvist; Maxime Delmas; Cecilia Wieder; Pablo Rodríguez Mier; Clément Frainay; Florence Vinson; Timothy Ebbels; Nathalie Poupin; Fabien Jourdan
Source: check_circle
Crossref

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration

2024-01-09 | Preprint
DOI: 10.1101/2024.01.09.574780
Contributors: Cecilia Wieder; Juliette Cooke; Clement Frainay; Nathalie Poupin; Russell Bowler; Fabien Jourdan; Katerina J. Kechris; Rachel PJ Lai; Timothy Ebbels
Source: check_circle
Crossref

Supporting data for "Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours"

GigaScience Database
2023 | Dataset
DOI: 10.5524/102418
Contributors: Maxime Delmas; Olivier Filangi; Duperier Christophe; Nils Paulhe; Florence Vinson; Pablo Rodriguez-Mier; Franck Giacomoni; Fabien Jourdan; Clément Frainay
Source: check_circle
DataCite

PhysioFit: a software to quantify cell growth parameters and extracellular fluxes

2023-10-16 | Preprint
DOI: 10.1101/2023.10.12.561695
Contributors: Loïc Le Grégam; Yann Guitton; Floriant Bellvert; Stéphanie Heux; Fabien Jourdan; Jean-Charles Portais; Pierre Millard
Source: check_circle
Crossref

ELIXIR and Toxicology: a community in development [version 2; peer review: 2 approved]

2023-10-03 | Journal article
DOI: 10.12688/f1000research.74502.2
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER: 031L0107
Funded by GRANT_NUMBER: 212930/Z/18/Z,208381/A/17/Z
Funded by GRANT_NUMBER: 3718 674150
Funded by GRANT_NUMBER: 731075,681002,814572,825712,733032,953183, 814401,896141,965406,814425,825489
Funded by GRANT_NUMBER: 859891
Funded by GRANT_NUMBER: ANR-INBS-0010
Funded by GRANT_NUMBER:

CO19/00060

Funded by GRANT_NUMBER: IUT34-14
Funded by GRANT_NUMBER: LIFE17 ENV/SK/000355
Funded by GRANT_NUMBER: N2020-0005
Funded by GRANT_NUMBER: TK143
Contributors: Marvin Martens; Rob Stierum; Emma L. Schymanski; Chris T. Evelo; Reza Aalizadeh; Hristo Aladjov; Kasia Arturi; Karine Audouze; Pavel Babica; Karel Berka et al.
Source: check_circle
F1000

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

2023-07-02 | Preprint
DOI: 10.1101/2023.06.30.547200
Contributors: Louison Fresnais; Olivier Perin; Anne Riu; Romain Grall; Alban Ott; Bernard Fromenty; Jean-Clément Gallardo; Maximilian Stingl; Clément Frainay; Fabien Jourdan et al.
Source: check_circle
Crossref

Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors

GigaScience
2022-12-28 | Journal article
DOI: 10.1093/gigascience/giad065
Contributors: Maxime Delmas; Olivier Filangi; Christophe Duperier; Nils Paulhe; Florence Vinson; Pablo Rodriguez-Mier; Franck Giacomoni; Fabien Jourdan; Clément Frainay
Source: check_circle
Crossref

Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours

2022-09-15 | Preprint
DOI: 10.1101/2022.09.13.507596
Contributors: M. Delmas; O. Filangi; C. Duperier; N. Paulhe; F. Vinson; P. Rodriguez-Mier; F. Giacomoni; F. Jourdan; C. Frainay
Source: check_circle
Crossref

Chapter Eight - Plant genome-scale metabolic networks

2021 | Book chapter
DOI: 10.1016/bs.abr.2020.09.021
HAL: hal-03149497
Contributors: Léo Gerlin; Clément Frainay; Fabien Jourdan; Caroline Baroukh; Sylvain Prigent
Source: Self-asserted source
Fabien Jourdan via HAL

Gaining Insights Into Metabolic Networks Using Chemometrics and Bioinformatics: Chronic Kidney Disease as a Clinical Model

Frontiers in Molecular Biosciences
2021 | Journal article
DOI: 10.3389/fmolb.2021.682559
HAL: hal-03318230
Contributors: Julien Boccard; Domitille Schvartz; Santiago Codesido; Mohamed Hanafi; Yoric Gagnebin; Belén Ponte; Fabien Jourdan; Serge Rudaz
Source: Self-asserted source
Fabien Jourdan via HAL

Milk metabolome reveals variations on enteric methane emissions from dairy cows fed a specific inhibitor of the methanogenesis pathway

Journal of Dairy Science
2021-12 | Journal article
DOI: 10.3168/jds.2021-20477
Contributors: Bénédict Yanibada; Ulli Hohenester; Mélanie Pétéra; Cécile Canlet; Stéphanie Durand; Fabien Jourdan; Anne Ferlay; Diego P. Morgavi; Hamid Boudra
Source: check_circle
Crossref

FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

Bioinformatics
2021-11-05 | Journal article
DOI: 10.1093/bioinformatics/btab627
Contributors: Maxime Delmas; Olivier Filangi; Nils Paulhe; Florence Vinson; Christophe Duperier; William Garrier; Paul-Emeric Saunier; Yoann Pitarch; Fabien Jourdan; Franck Giacomoni et al.
Source: check_circle
Crossref

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

PLOS Computational Biology
2021-09-07 | Journal article
DOI: 10.1371/journal.pcbi.1009105
Contributors: Cecilia Wieder; Kiran Raosaheb Patil; Clément Frainay; Nathalie Poupin; Pablo Rodríguez-Mier; Florence Vinson; Juliette Cooke; Rachel PJ Lai; Jacob G. Bundy; Fabien Jourdan et al.
Source: check_circle
Crossref

Multiplatform metabolomics for an integrative exploration of metabolic syndrome in older men

EBioMedicine
2021-07 | Journal article
DOI: 10.1016/j.ebiom.2021.103440
HAL: hal-03283772
PMID: 34161887
Contributors: Blandine Comte; Stéphanie Monnerie; Marion Brandolini-Bunlon; Cécile Canlet; Florence Castelli; Emeline Chu-Van; Benoit Colsch; François Fenaille; Charlotte Joly; Fabien Jourdan et al.
Source: Self-asserted source
Fabien Jourdan via HAL

Osteogenic Response of Human Mesenchymal Stem Cells Analysed Using Combined Intracellular and Extracellular Metabolomic Monitoring

Cellular Physiology and Biochemistry
2021-06-19 | Journal article
DOI: 10.33594/000000377
HAL: hal-03312596
PMID: 34148309
Contributors: Amal Surrati; Evseev Sergey; Fabien Jourdan; Dong-Hyun Kim; Virginie Sottile
Source: Self-asserted source
Fabien Jourdan via HAL

Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis

2021-05-24 | Other
DOI: 10.1101/2021.05.24.445406
Contributors: Cecilia Wieder; Clément Frainay; Nathalie Poupin; Pablo Rodríguez-Mier; Florence Vinson; Juliette Cooke; Rachel PJ Lai; Jacob G Bundy; Fabien Jourdan; Timothy Ebbels
Source: check_circle
Crossref

Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia

Journal of Experimental Medicine
2021-05-03 | Journal article
DOI: 10.1084/jem.20200924
HAL: hal-03185690
PMID: 33760042
Contributors: Lucille Stuani; Marie Sabatier; Estelle Saland; Guillaume Cognet; Nathalie Poupin; Claudie Bosc; Florence Castelli; Lara Gales; Evgenia Turtoi; Camille Montersino et al.
Source: Self-asserted source
Fabien Jourdan via HAL

FORUM: Building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

2021-02-14 | Preprint
DOI: 10.1101/2021.02.12.430944
Contributors: M. Delmas; O. Filangi; N. Paulhe; F. Vinson; C. Duperier; W. Garrier; P.-E. Saunier; Y. Pitarch; F. Jourdan; F. Giacomoni et al.
Source: check_circle
Crossref

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks

PLOS Computational Biology
2021-02-11 | Journal article
DOI: 10.1371/journal.pcbi.1008730
Contributors: Pablo Rodríguez-Mier; Christoph Kaleta; Nathalie Poupin; Carlo de Blasio; Laurent Le Cam; Fabien Jourdan
Source: check_circle
Crossref

1H-NMR metabolomics response to a realistic diet contamination with the mycotoxin deoxynivalenol: Effect of probiotics supplementation

Food and Chemical Toxicology
2020 | Journal article
DOI: 10.1016/j.fct.2020.111222
HAL: hal-02627840
PMID: 32145353
Contributors: Imourana Alassane-Kpembi; Cécile Canlet; Marie Tremblay-Franco; Fabien Jourdan; Maxime Chalzaviel; Philippe Pinton; Anne Marie Cossalter; Caroline Achard; Mathieu Castex; Sylvie Combes et al.
Source: Self-asserted source
Fabien Jourdan via HAL

Improving lipid mapping in Genome Scale Metabolic Networks using ontologies

Metabolomics
2020 | Journal article
DOI: 10.1007/s11306-020-01663-5
HAL: hal-02935172
PMID: 32215752
Contributors: Nathalie Poupin; Florence Vinson; Arthur Moreau; Aurélie Batut; Maxime Chazalviel; Benoit Colsch; Laetitia Fouillen; Sarah Guez; Spiro Khoury; Jessica Dalloux-Chioccioli et al.
Source: Self-asserted source
Fabien Jourdan via HAL

Poster RFMF-MetaboMeeting 2020 : Recommender system embedded in metabolic network visualization.

figshare
2020 | Other
DOI: 10.6084/m9.figshare.11691483.v1
Contributors: Clément Frainay; Maxime Chazalviel; Fabien Jourdan
Source: check_circle
DataCite
grade
Preferred source (of 2)‎

Poster RFMF-MetaboMeeting 2020 : Recommender system embedded in metabolic network visualization.

figshare
2020 | Other
DOI: 10.6084/m9.figshare.11691483
Contributors: Clément Frainay; Maxime Chazalviel; Fabien Jourdan
Source: check_circle
DataCite

Combinatory therapy targeting mitochondrial oxidative phosphorylation improves efficacy of IDH mutant inhibitors in acute myeloid leukemia

2020-09-10 | Working paper
DOI: 10.1101/749580
HAL: hal-02935177
Contributors: Lucille Stuani; Marie Sabatier; Feng Wang; Nathalie Poupin; Claudie Bosc; Estelle Saland; Florence Castelli; Lara Gales; Camille Montersino; Emeline Boet et al.
Source: Self-asserted source
Fabien Jourdan via HAL

Postprandial NMR-Based Metabolic Exchanges Reflect Impaired Phenotypic Flexibility across Splanchnic Organs in the Obese Yucatan Mini-Pig

Nutrients
2020-08-14 | Journal article
DOI: 10.3390/nu12082442
Contributors: Marie Tremblay-Franco; Nathalie Poupin; Aurélien Amiel; Cécile Canlet; Didier Rémond; Laurent Debrauwer; Dominique Dardevet; Fabien Jourdan; Isabelle Savary-Auzeloux; Sergio Polakof
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks

2020-07-17 | Preprint
DOI: 10.1101/2020.07.17.208918
Contributors: Pablo Rodríguez-Mier; Nathalie Poupin; Carlo de Blasio; Laurent Le Cam; Fabien Jourdan
Source: check_circle
Crossref

The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compounds

International Journal of Molecular Sciences
2020-05-14 | Journal article
DOI: 10.3390/ijms21103480
Contributors: Juliette Legler; Daniel Zalko; Fabien Jourdan; Miriam Jacobs; Bernard Fromenty; Patrick Balaguer; William Bourguet; Vesna Munic Kos; Angel Nadal; Claire Beausoleil et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Improving prediction of essential genes using context-specific metabolic network ensembles

2020-01-22 | Other
URI: hal-02948371
Contributors: Pablo Rodríguez-Mier; Nathalie Poupin; Carlo de Blasio; Laurent Le Cam; Fabien Jourdan
Source: Self-asserted source
Fabien Jourdan via HAL

MetExplore: Omics data analysis in the context of metabolic networks

2020-01-22 | Other
URI: hal-02948391
Contributors: Maxime Chazalviel; Adrien Rohan; Nathalie Poupin; Florence Vinson; Clément Frainay; Ludovic Cottret; Fabien Jourdan
Source: Self-asserted source
Fabien Jourdan via HAL

Caractérisation des dangers des contaminants alimentaires : ce qui change; conséquences pour la recherche et l’évaluation

Innovations Agronomiques
2019 | Journal article
DOI: 10.15454/ij9z4r
URI: hal-02275513
Contributors: Jean-Pierre Cravedi; Fabien Jourdan
Source: Self-asserted source
Fabien Jourdan via HAL

Genome-scale metabolic networks

2019 | Book chapter
DOI: 10.1201/9781315370583-8
URI: hal-02786295
Contributors: Clément Frainay; Fabien Jourdan
Source: Self-asserted source
Fabien Jourdan via HAL

Inhibition of enteric methanogenesis in cows induces changes in plasma metabolome highlighting potential emission markers

2019 | Book
URI: hal-02788492
Contributors: Bénédict Yanibada; Ulli Hohenester; Mélanie Petera; Cécile Canlet; Stéphanie Durand; Fabien Jourdan; Cécile Martin; Maguy Eugène; Diego Morgavi; Abdelhamid Boudra
Source: Self-asserted source
Fabien Jourdan via HAL

Réflexion prospective interdisciplinaire. Approches prédictives pour la biologie et l’écologie. Rapport de synthèse.

2019 | Report
DOI: 10.15454/1.5783037069682676e12
URI: hal-02791153
Contributors: Carole Caranta; Hervé Monod; Hugues Berry; Michaël Chelle; Michel Génard; Fabien Jourdan; Christian Lannou; Emmanuelle Maguin; Françoise Médale; Sylvie Oddou-Muratorio et al.
Source: Self-asserted source
Fabien Jourdan via HAL

Study of the hepatic metabolic effects induced by PFOA exposure using a multiplatform metabolomics approach

2019-09-08 | Other
URI: hal-02306108
Contributors: Joran Villaret Cazadamont; Noemie Butin; Cecile Canlet; Marie Tremblay Franco; R. Gautier; Floriant Bellvert; Fabien Jourdan; Daniel Zalko; Nicolas J. Cabaton; Nathalie Poupin
Source: Self-asserted source
Fabien Jourdan via HAL

Hepatic metabolomics and transcriptomics provide valuable insights on inflammatory and metabolic features in rats fed on a high fat diet but showing similar clinical phenotyping alterations

2019-05-21 | Other
URI: hal-02162582
Contributors: Sergio Polakof; Marie Tremblay Franco; Cécile Canlet; Jérémie David; Fabien Jourdan; Nicolas J. Cabaton; Nathalie Poupin; Blandine Comte; Daniel Zalko
Source: Self-asserted source
Fabien Jourdan via HAL

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud.

Apollo - University of Cambridge Repository
2019-01-03 | Journal article
DOI: 10.17863/cam.34815
Contributors: Kristian Peters; James Bradbury; Sven Bergmann; Marco Capuccini; Marta Cascante; Pedro De Atauri; Ebbels, Timothy MD; Carles Foguet; Robert Glen; Alejandra Gonzalez-Beltran et al.
Source: check_circle
DataCite

Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126

Archives of Toxicology
2018 | Journal article
DOI: 10.1007/s00204-018-2235-7
URI: hal-02621552
PMID: 29947894
Contributors: Robin Mesnage; Martina Biserni; Sucharitha Balu; Clément Frainay; Nathalie Poupin; Fabien Jourdan; Eva Wozniak; Theodoros Xenakis; Charles A. Mein; Michael N. Antoniou
Source: Self-asserted source
Fabien Jourdan via HAL

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

GigaScience
2018 | Journal article
DOI: 10.1093/gigascience/giy149
Part of ISSN: 2047-217X
Contributors: Kristian Peters; James Bradbury; Sven Bergmann; Marco Capuccini; Marta Cascante; Pedro de Atauri; Timothy M D Ebbels; Carles Foguet; Robert Glen; Alejandra Gonzalez-Beltran et al.
Source: Self-asserted source
Fabien Jourdan via Crossref Metadata Search

Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic Differentiation

Journal of Proteome Research
2018-11 | Journal article
DOI: 10.1021/acs.jproteome.8b00524
Part of ISSN: 1535-3893
Contributors: Nathalie Poupin; Anne Corlu; Nicolas J. Cabaton; Hélène Dubois-Pot-Schneider; Cécile Canlet; Elodie Person; Sandrine Bruel; Clément Frainay; Florence Vinson; Florence Maurier et al.
Source: Self-asserted source
Fabien Jourdan via Crossref Metadata Search

An Untargeted Metabolomics Approach to Investigate the Metabolic Modulations of HepG2 Cells Exposed to Low Doses of Bisphenol A and 17β-Estradiol

Frontiers in Endocrinology
2018-09 | Journal article
DOI: 10.3389/fendo.2018.00571
Part of ISSN: 1664-2392
Contributors: Nicolas J. Cabaton; Nathalie Poupin; Cécile Canlet; Marie Tremblay-Franco; Marc Audebert; Jean-Pierre Cravedi; Anne Riu; Fabien Jourdan; Daniel Zalko
Source: Self-asserted source
Fabien Jourdan via Crossref Metadata Search

Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas

Metabolites
2018-09 | Journal article | Author
DOI: 10.3390/metabo8030051
Contributors: Clément Frainay; Emma L. Schymanski; Steffen Neumann; Benjamin Merlet; salek; Fabien Jourdan; Oscar Yanes
Source: check_circle
Multidisciplinary Digital Publishing Institute
grade
Preferred source (of 2)‎

MetaboRank: network-based recommendation system to interpret and enrich metabolomics results

Bioinformatics
2018-07-06 | Journal article
DOI: 10.1093/bioinformatics/bty577
Part of ISSN: 1367-4803
Contributors: Clément Frainay; Sandrine Aros; Maxime Chazalviel; Thomas Garcia; Florence Vinson; Nicolas Weiss; Benoit Colsch; Frédéric Sedel; Dominique Thabut; Christophe Junot et al.
Source: Self-asserted source
Fabien Jourdan via Crossref Metadata Search

MetExplore: collaborative edition and exploration of metabolic networks.

Nucleic acids research
2018-04 | Journal article
DOI: 10.1093/nar/gky301
PMID: 29718355
Contributors: Cottret L; Frainay C; Chazalviel M; Cabanettes F; Gloaguen Y; Camenen E; Merlet B; Heux S; Portais JC; Poupin N et al.
Source: Self-asserted source
Fabien Jourdan via Europe PubMed Central

Targeted versus untargeted omics - the CAFSA story.

Journal of inherited metabolic disease
2018-02 | Journal article
DOI: 10.1007/s10545-017-0134-3
PMID: 29423831
Contributors: Del Mar Amador M; Colsch B; Lamari F; Jardel C; Ichou F; Rastetter A; Sedel F; Jourdan F; Frainay C; Wevers RA et al.
Source: Self-asserted source
Fabien Jourdan via Europe PubMed Central

The future of metabolomics in ELIXIR.

Apollo - University of Cambridge Repository
2018-01-19 | Journal article
DOI: 10.17863/CAM.17780
Contributors: Merlijn van Rijswijk; Charlie Beirnaert; Christophe Caron; Cascante Marta; Victoria DOMINGUEZ DEL ANGEL; Warwick B Dunn; Ebbels, Timothy MD; Franck Giacomoni; Alejandra Gonzalez-Beltran; Thomas Hankemeier et al.
Source: check_circle
DataCite

MetExploreViz: web component for interactive metabolic network visualization

Bioinformatics
2018-01-15 | Journal article
DOI: 10.1093/bioinformatics/btx588
Contributors: Maxime Chazalviel; Clément Frainay; Nathalie Poupin; Florence Vinson; Benjamin Merlet; Yoann Gloaguen; Ludovic Cottret; Fabien Jourdan
Source: check_circle
Crossref

PathQuant: A bioinformatic tool to quantitatively annotate the relationship between genes and metabolites through metabolic pathway mapping

FASEB Journal
2017 | Journal article
URI: hal-02622661
Contributors: Sandra Therrien-Laperriere; S. Cherkaoui; G. Boucher; . Igenomed Consortium; Fabien Jourdan; G. Lettre; J. D. Rioux; C. D. Rosiers
Source: Self-asserted source
Fabien Jourdan via HAL

The future of metabolomics in ELIXIR.

F1000Research
2017 | Journal article
PMID: 29043062
PMC: PMC5627583
Contributors: van Rijswijk M; Beirnaert C; Caron C; Cascante M; Dominguez V; Dunn WB; Ebbels TMD; Giacomoni F; Gonzalez-Beltran A; Hankemeier T et al.
Source: Self-asserted source
Fabien Jourdan via Europe PubMed Central

MetaNetter 2: A Cytoscape plugin for ab initio network analysis and metabolite feature classification.

Journal of chromatography. B, Analytical technologies in the biomedical and life sciences
2017-12 | Journal article
DOI: 10.1016/j.jchromb.2017.08.015
PMID: 29030098
PMC: PMC5726607
Contributors: Burgess KEV; Borutzki Y; Rankin N; Daly R; Jourdan F
Source: Self-asserted source
Fabien Jourdan via Europe PubMed Central
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