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Scopus Author ID: 12770450200
Loop profile: 385278

Keywords

archaeogenetics, human population history, admixture graphs, archaeology, historical linguistics

Countries

Czech Republic

Activities

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Employment (2)

University of South Bohemia in České Budějovice: České Budějovice, CZ

2018-03 to present | research assistant (Faculty of Science)
Employment
Source: Self-asserted source
Pavel Flegontov

University of Ostrava: Ostrava, CZ

2013-10 to present | group leader (Department of Biology and Ecology)
Employment
Source: Self-asserted source
Pavel Flegontov

Education and qualifications (2)

Lomonosov Moscow State University: Moscow, RU

2005 to 2008 | Cand. Sci. (Department of Molecular Biology)
Education
Source: Self-asserted source
Pavel Flegontov

Lomonosov Moscow State University: Moscow, RU

2000 to 2005 | M.Sc. (Department of Molecular Biology)
Education
Source: Self-asserted source
Pavel Flegontov

Works (50 of 63)

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Page 1 of 2

Performance of qpAdm-based screens for genetic admixture on admixture-graph-shaped histories and stepping-stone landscapes

GENETICS
2025-04-02 | Journal article
DOI: 10.1093/genetics/iyaf047
Contributors: Olga Flegontova; Ulaş Işıldak; Eren Yüncü; Matthew P Williams; Christian D Huber; Jan Kočí; Leonid A Vyazov; Piya Changmai; Pavel Flegontov; Nicholas Barton
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Performance of <italic>qpAdm</italic>-based screens for genetic admixture on admixture-graph-shaped histories and stepping-stone landscapes

BioRxiv
2024 | Journal article
DOI: 10.1101/2023.04.25.538339
WOSUID: PPRN:65872714
Contributors: Flegontova, Olga; Isildak, Ulas; Yuncu, Eren; Williams, Matthew P; Huber, Christian D; Koci, Jan; Vyazov, Leonid A; Changmai, Piya; Flegontov, Pavel
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Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA

GENETICS
2024-09-04 | Journal article
DOI: 10.1093/genetics/iyae110
Contributors: Matthew P Williams; Pavel Flegontov; Robert Maier; Christian D Huber; S Ramachandran
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Postglacial genomes from foragers across Northern Eurasia reveal prehistoric mobility associated with the spread of the Uralic and Yeniseian languages

BioRxiv
2023 | Journal article
DOI: 10.1101/2023.10.01.560332
Contributors: Tian Chen Zeng; Leonid A. Vyazov; Alexander Kim; Pavel Flegontov; Kendra Sirak; Robert Maier; Iosif Lazaridis; Ali Akbari; Michael Frachetti; Alexey A. Tishkin et al.
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Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia

Scientific Reports
2023 | Journal article
DOI: 10.1038/S41598-023-35507-8
WOSUID: WOS:000995835600030
Contributors: Changmai, Piya; Phongbunchoo, Yutthaphong; Koci, Jan; Flegontov, Pavel
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Testing Times: Challenges in Disentangling Admixture Histories in Recent and Complex Demographies

BioRxiv
2023 | Journal article
DOI: 10.1101/2023.11.13.566841
WOSUID: PPRN:86148089
Contributors: Williams, Matthew P.; Flegontov, Pavel; Maier, Robert; Huber, Christian D.
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Water masses shape pico-nano eukaryotic communities of the Weddell Sea

Communications Biology
2023 | Journal article
DOI: 10.1038/S42003-023-04452-7
WOSUID: WOS:001003264200001
Contributors: Flegontova, Olga; Flegontov, Pavel; Jachnikova, Nikola; Lukes, Julius; Horak, Ales
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Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes

PLOS Genetics
2023-09-07 | Journal article
DOI: 10.1371/journal.pgen.1010931
Contributors: Pavel Flegontov; Charleston Wen-Kai Chiang; Ulaş Işıldak; Robert Maier; Eren Yüncü; Piya Changmai; David Reich
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On the limits of fitting complex models of population history to f-statistics

eLife
2023-06-29 | Journal article
DOI: 10.7554/eLife.85492
Contributors: Robert Maier; Pavel Flegontov; Olga Flegontova; Ulaş Işıldak; Piya Changmai; David Reich
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Modeling of African population history usingf-statistics can be highly biased and is not addressed by previously suggested SNP ascertainment schemes

2023-01-22 | Preprint
DOI: 10.1101/2023.01.22.525077
Contributors: Pavel Flegontov; Ulaş Işıldak; Robert Maier; Eren Yüncü; Piya Changmai; David Reich
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Ancient DNA from Protohistoric Period Cambodia indicates that South Asians admixed with local populations as early as 1st-3rd centuries CE

Scientific Reports
2022 | Journal article
DOI: 10.1038/S41598-022-26799-3
WOSUID: WOS:000971885800027
Contributors: Changmai, Piya; Pinhasi, Ron; Pietrusewsky, Michael; Stark, Miriam T.; Ikehara-Quebral, Rona Michi; Reich, David; Flegontov, Pavel
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Indian genetic heritage in Southeast Asian populations

PLOS Genetics
2022 | Journal article
DOI: 10.1371/JOURNAL.PGEN.1010036
WOSUID: WOS:000759896600002
Contributors: Changmai, Piya; Jaisamut, Kitipong; Kampuansai, Jatupol; Kutanan, Wibhu; Altinisik, N. Ezgi S.; Flegontova, Olga; Inta, Angkhana S.; Yuencue, Eren; Boonthai, Worrawit S.; Pamjav, Horolma et al.
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Reconstructing the genetic history of Kra-Dai speakers from Thailand

BioRxiv
2022 | Journal article
DOI: 10.1101/2022.06.30.498332
WOSUID: PPRN:10520331
Contributors: Changmai, P.; Koci, J.; Flegontov, P.
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On the limits of fitting complex models of population history to genetic data

2022-05-08 | Preprint
DOI: 10.1101/2022.05.08.491072
Contributors: Robert Maier; Pavel Flegontov; Olga Flegontova; Piya Changmai; David Reich
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Circumpolar peoples and their languages: lexical and genomic data suggest ancient Chukotko-Kamchatkan–Nivkh and Yukaghir-Samoyedic connections

2021-02-28 | Preprint
DOI: 10.1101/2021.02.27.433193
Contributors: George Starostin; N. Ezgi Altınışık; Mikhail Zhivlov; Piya Changmai; Olga Flegontova; Sergey A. Spirin; Andrei Zavgorodnii; Pavel Flegontov; Alexei S. Kassian
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<i>Sergentomyia schwetzi</i>: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources

Plos One
2020 | Journal article
DOI: 10.1371/JOURNAL.PONE.0230537
WOSUID: WOS:000535305100020
Contributors: Polanska, Nikola; Ishemgulova, Aygul; Volfova, Vera; Flegontov, Pavel; Votypka, Jan; Yurchenko, Vyacheslav; Volf, Petr
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Environmental determinants of the distribution of planktonic diplonemids and kinetoplastids in the oceans

Environmental Microbiology
2020 | Journal article
DOI: 10.1111/1462-2920.15190
WOSUID: WOS:000566773600001
Contributors: Flegontova, Olga; Flegontov, Pavel; Londono, Paula Andrea Castaneda; Walczowski, Waldemar; Santic, Danijela; Edgcomb, Virginia P.; Lukes, Julius; Horak, Ales
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Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids

BMC Biology
2020 | Journal article
DOI: 10.1186/S12915-020-0754-1
WOSUID: WOS:000519976800001
Contributors: Butenko, Anzhelika; Opperdoes, Fred R.; Flegontova, Olga; Horak, Ales; Hampl, Vladimir; Keeling, Patrick; Gawryluk, Ryan M. R.; Tikhonenkov, Denis; Flegontov, Pavel; Lukes, Julius
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Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America

Nature
2019 | Journal article
DOI: 10.1038/S41586-019-1251-Y
WOSUID: WOS:000471297600052
Contributors: Flegontov, Pavel; Altinisik, N. Ezgi; Changmai, Piya; Rohland, Nadin; Mallick, Swapan; Adamski, Nicole; Bolnick, Deborah A.; Broomandkhoshbacht, Nasreen; Candilio, Francesca; Culleton, Brendan J. et al.
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The genetic history of admixture across inner Eurasia

Nature Ecology & Evolution
2019 | Journal article
DOI: 10.1038/S41559-019-0878-2
WOSUID: WOS:000470917200021
Contributors: Jeong, Choongwon; Balanovsky, Oleg; Lukianova, Elena; Kahbatkyzy, Nurzhibek; Flegontov, Pavel; Zaporozhchenko, Valery; Immell, Alexander; Wang, Chuan-Chao; Ixan, Olzhas; Khussainova, Elmira et al.
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Ancient genomes document multiple waves of migration in Southeast Asian prehistory

Science
2018 | Journal article
DOI: 10.1126/science.aat3188
EID:

2-s2.0-85047268535
Contributors: Lipson, M.; Cheronet, O.; Mallick, S.; Rohland, N.; Oxenham, M.; Pietrusewsky, M.; Pryce, T.O.; Willis, A.; Matsumura, H.; Buckley, H. et al.
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Characterizing the genetic history of admixture across inner Eurasia

BioRxiv
2018 | Journal article
DOI: 10.1101/327122
WOSUID: PPRN:14526658
Contributors: Jeong, C.; Balanovsky, O.; Lukianova, E.; Kahbatkyzy, N.; Flegontov, P.; Zaporozhchenko, V.; Immel, A.; Wang, C.-C.; Ixan, O.; Khussainova, E. et al.
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Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand

Scientific Reports
2018 | Journal article
DOI: 10.1038/s41598-018-20020-0
EID:

2-s2.0-85041039002
Contributors: Kutanan, W.; Kampuansai, J.; Changmai, P.; Flegontov, P.; Schröder, R.; MacHoldt, E.; Hübner, A.; Kangwanpong, D.; Stoneking, M.
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Dispersals of the Siberian Y-chromosome haplogroup Q in Eurasia

Molecular Genetics and Genomics
2018 | Journal article
DOI: 10.1007/s00438-017-1363-8
EID:

2-s2.0-85028962356
Contributors: Huang, Y.-Z.; Pamjav, H.; Flegontov, P.; Stenzl, V.; Wen, S.-Q.; Tong, X.-Z.; Wang, C.-C.; Wang, L.-X.; Wei, L.-H.; Gao, J.-Y. et al.
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Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase

Scientific Reports
2018 | Journal article
DOI: 10.1038/s41598-018-23575-0
EID:

2-s2.0-85044593324
Contributors: Záhonová, K.; Petrželková, R.; Valach, M.; Yazaki, E.; Tikhonenkov, D.V.; Butenko, A.; Janouškovec, J.; Hrdá, Š.; Klimeš, V.; Burger, G. et al.
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Neobodonids are dominant kinetoplastids in the global ocean

Environmental Microbiology
2018 | Journal article
DOI: 10.1111/1462-2920.14034
EID:

2-s2.0-85042070568
Contributors: Flegontova, O.; Flegontov, P.; Malviya, S.; Poulain, J.; de Vargas, C.; Bowler, C.; Lukeš, J.; Horák, A.
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Pavel Flegontov via Scopus - Elsevier
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Trypanosomatid mitochondrial RNA editing: Dramatically complex transcript repertoires revealed with a dedicated mapping tool

Nucleic Acids Research
2018 | Journal article
DOI: 10.1093/nar/gkx1202
EID:

2-s2.0-85044641396
Contributors: Gerasimov, E.S.; Gasparyan, A.A.; Kaurov, I.; Tichý, B.; Logacheva, M.D.; Kolesnikov, A.A.; Lukeš, J.; Yurchenko, V.; Zimmer, S.L.; Flegontov, P.
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Pavel Flegontov via Scopus - Elsevier
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Archaeogenomic analysis of the first steps of neolithization in anatolia and the aegean

Proceedings of the Royal Society B: Biological Sciences
2017 | Journal article
DOI: 10.1098/rspb.2017.2064
EID:

2-s2.0-85035352066
Contributors: Kilinç, G.M.; Koptekin, D.; Atakuman, Ç.; Sümer, A.P.; Dönertas, H.M.; Yaka, R.; Bilgin, C.C.; Büyükkarakaya, A.M.; Baird, D.; Altinişik, E. et al.
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Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid

Proceedings of the National Academy of Sciences of the United States of America
2017 | Journal article
DOI: 10.1073/pnas.1712311114
EID:

2-s2.0-85032705900
Contributors: Skalický, T.; Dobáková, E.; Wheeler, R.J.; Tesařová, M.; Flegontov, P.; Jirsová, D.; Votýpka, J.; Yurchenko, V.; Ayala, F.J.; Lukeš, J.
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Genome of Ca. Pandoraea novymonadis, an endosymbiotic bacterium of the trypanosomatid Novymonas esmeraldas

Frontiers in Microbiology
2017 | Journal article
DOI: 10.3389/fmicb.2017.01940
EID:

2-s2.0-85030628771
Contributors: Kostygov, A.Y.; Butenko, A.; Nenarokova, A.; Tashyreva, D.; Flegontov, P.; Lukeš, J.; Yurchenko, V.
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Pavel Flegontov via Scopus - Elsevier
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Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis

Scientific Reports
2017 | Journal article
DOI: 10.1038/s41598-017-11866-x
EID:

2-s2.0-85029498112
Contributors: Tanifuji, G.; Cenci, U.; Moog, D.; Dean, S.; Nakayama, T.; David, V.; Fiala, I.; Curtis, B.A.; Sibbald, S.J.; Onodera, N.T. et al.
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Molecular mechanisms of thermal resistance of the insect trypanosomatid Crithidia thermophila

PLoS ONE
2017 | Journal article
DOI: 10.1371/journal.pone.0174165
EID:

2-s2.0-85015994779
Contributors: Ishemgulova, A.; Butenko, A.; Kortišová, L.; Boucinha, C.; Grybchuk-Ieremenko, A.; Morelli, K.A.; Tesařová, M.; Kraeva, N.; Grybchuk, D.; Pánek, T. et al.
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Pavel Flegontov via Scopus - Elsevier
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Pitfalls of the Geographic Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews (vol 8, pg 2259, 2016)

Genome Biology and Evolution
2017 | Journal article
DOI: 10.1093/GBE/EVX016
WOSUID: WOS:000396058400014
Contributors: Flegontov, Pavel; Kassian, Alexei; Thomas, Mark G.; Fedchenko, Valentina; Changmai, Piya; Starostin, George
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Comparative Metabolism of Free-living Bodo saltans and Parasitic Trypanosomatids

The Journal of eukaryotic microbiology
2016 | Journal article
DOI: 10.1111/jeu.12315
EID:

2-s2.0-85027935696
Contributors: Opperdoes, F.R.; Butenko, A.; Flegontov, P.; Yurchenko, V.; Lukeš, J.
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Pavel Flegontov via Scopus - Elsevier
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Extreme Diversity of Diplonemid Eukaryotes in the Ocean

Current Biology
2016 | Journal article
DOI: 10.1016/j.cub.2016.09.031
EID:

2-s2.0-84997079468
Contributors: Flegontova, O.; Flegontov, P.; Malviya, S.; Audic, S.; Wincker, P.; de Vargas, C.; Bowler, C.; Lukeš, J.; Horák, A.
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Genome of Leptomonas pyrrhocoris: A high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania

Scientific Reports
2016 | Journal article
DOI: 10.1038/srep23704
EID:

2-s2.0-84962425293
Contributors: Flegontov, P.; Butenko, A.; Firsov, S.; Kraeva, N.; Eliáš, M.; Field, M.C.; Filatov, D.; Flegontova, O.; Gerasimov, E.S.; Hlaváčová, J. et al.
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Pavel Flegontov via Scopus - Elsevier
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Genomic study of the Ket: A Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry

Scientific Reports
2016 | Journal article
DOI: 10.1038/srep20768
EID:

2-s2.0-84958554738
Contributors: Flegontov, P.; Changmai, P.; Zidkova, A.; Logacheva, M.D.; Altinişik, N.E.; Flegontova, O.; Gelfand, M.S.; Gerasimov, E.S.; Khrameeva, E.E.; Konovalova, O.P. et al.
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PARATRYPANOSOMA, THE MOST BASAL BRANCH AND ANOTHER MODEL SPECIES AMONG TRYPANOSOMATIDS

Protistology
2016 | Journal article
WOSUID: BCI:BCI201600652632
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Pitfalls of the geographic population structure (GPS) approach applied to human genetic history: A case study of ashkenazi jews

Genome Biology and Evolution
2016 | Journal article
DOI: 10.1093/gbe/evw162
EID:

2-s2.0-85018364558
Contributors: Flegontov, P.; Kassian, A.; Thomas, M.G.; Fedchenko, V.; Changmai, P.; Starostin, G.
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Pavel Flegontov via Scopus - Elsevier
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Toward high-resolution population genomics using archaeological samples

DNA Research
2016 | Journal article
DOI: 10.1093/dnares/dsw029
EID:

2-s2.0-84988938011
Contributors: Morozova, I.; Flegontov, P.; Mikheyev, A.S.; Bruskin, S.; Asgharian, H.; Ponomarenko, P.; Klyuchnikov, V.; Kumar, G.P.A.; Prokhortchouk, E.; Gankin, Y. et al.
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Pavel Flegontov via Scopus - Elsevier
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Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

eLife
2015 | Journal article
DOI: 10.7554/eLife.06974
EID:

2-s2.0-84937408158
Contributors: Woo, Y.H.; Ansari, H.; Otto, T.D.; Linger, C.M.K.; Olisko, M.K.; Michálek, J.; Saxena, A.; Shanmugam, D.; Tayyrov, A.; Veluchamy, A. et al.
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Differential Evolution approach to detect recent admixture

BMC Genomics
2015 | Journal article
DOI: 10.1186/1471-2164-16-S8-S9
EID:

2-s2.0-84969584485
Contributors: Kozlov, K.; Chebotarev, D.; Hassan, M.; Triska, M.; Triska, P.; Flegontov, P.; Tatarinova, T.V.
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Differential Evolution Approach to Detect Recent Admixture

ArXiv
2015 | Journal article
WOSUID: PPRN:22722117
Contributors: Kozlov, Konstantin; Chebotarov, Dmitry; Hassan, Mehedi; Triska, Martin; Triska, Petr; Flegontov, Pavel; Tatarinova, Tatiana
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Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites

Molecular Biology and Evolution
2015 | Journal article
DOI: 10.1093/molbev/msv021
EID:

2-s2.0-84929649984
Contributors: Flegontov, P.; Michálek, J.; Janouškovec, J.; Lai, D.-H.; Jirků, M.; Hajdušková, E.; Tomčala, A.; Otto, T.D.; Keeling, P.J.; Pain, A. et al.
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Gene loss and error-prone RNA editing in the mitochondrion of perkinsela, an endosymbiotic kinetoplastid

mBio
2015 | Journal article
DOI: 10.1128/mBio.01498-15
EID:

2-s2.0-84952815259
Contributors: David, V.; Flegontov, P.; Gerasimov, E.; Tanifuji, G.; Hashimi, H.; Logacheva, M.D.; Maruyama, S.; Onodera, N.T.; Gray, M.W.; Archibald, J.M. et al.
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Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry

ArXiv
2015 | Journal article
DOI: 10.1101/024554
WOSUID: PPRN:49319252
Contributors: Flegontov, Pavel; Changmai, Piya; Zidkova, Anastassiya; Logacheva, Maria D.; Flegontova, Olga; Gelfand, Mikhail S.; Gerasimov, Evgeny S.; Khrameeva, Ekaterina E.; Konovalova, Olga P.; Neretina, Tatiana et al.
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INTERRUPTED RESPIRATORY CHAIN IN THE MITOCHONDRION OF CHROMERA VELIA

European Journal of Phycology
2015 | Journal article
WOSUID: WOS:000360244400065
Contributors: Obornik, Miroslav; Flegontov, Pavel; Michalek, Jan; Lukes, Julius; Pain, Arnab
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Leptomonas seymouri: Adaptations to the Dixenous Life Cycle Analyzed by Genome Sequencing, Transcriptome Profiling and Co-infection with Leishmania donovani

PLoS Pathogens
2015 | Journal article
DOI: 10.1371/journal.ppat.1005127
EID:

2-s2.0-84940729484
Contributors: Kraeva, N.; Butenko, A.; Hlaváčová, J.; Kostygov, A.; Myškova, J.; Grybchuk, D.; Leštinová, T.; Votýpka, J.; Volf, P.; Opperdoes, F. et al.
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Unexpectedly streamlined mitochondrial genome of the euglenozoan Euglena gracilis

Genome Biology and Evolution
2015 | Journal article
DOI: 10.1093/gbe/evv229
EID:

2-s2.0-84982156965
Contributors: Dobáková, E.; Flegontov, P.; Skalický, T.; Lukeš, J.
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The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants

PLoS Genetics
2014 | Journal article
DOI: 10.1371/journal.pgen.1004007
EID:

2-s2.0-84895531638
Contributors: Porcel, B.M.; Denoeud, F.; Opperdoes, F.; Noel, B.; Madoui, M.-A.; Hammarton, T.C.; Field, M.C.; Da Silva, C.; Couloux, A.; Poulain, J. et al.
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Peer review (4 reviews for 4 publications/grants)

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