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Other IDs

Scopus Author ID: 57188877911
ResearcherID: H-9359-2017

Keywords

image processing, signal processing, medical images, computer tomography, machine learning

Countries

Czech Republic

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Employment (3)

Brno University of Technology: Brno, South Moravian Region, CZ

2020-10-01 to present | Assistant Professor (Department of Biomedical Engineering)
Employment
Source: Self-asserted source
Jiri Chmelik

German Cancer Research Center: Heidelberg, Baden-Württemberg State, DE

2021-02-08 to 2021-08-08 | PostDoctoral Scientist (Division of Medical Image Computing)
Employment
Source: Self-asserted source
Jiri Chmelik

Brno University of Technology: Brno, South Moravian Region, CZ

2017-09-01 to 2020-09-30 | Researcher (Academic) (Department of Biomedical Engineering)
Employment
Source: Self-asserted source
Jiri Chmelik

Education and qualifications (3)

Brno University of Technology: Brno, South Moravian Region, CZ

2013-09-01 to 2020-09-29 | Ph.D. (Department of Biomedical Engineering)
Education
Source: Self-asserted source
Jiri Chmelik

Brno University of Technology: Brno, South Moravian Region, CZ

2011-06-24 to 2013-06-10 | Ing. (Department of Biomedical Engineering)
Education
Source: Self-asserted source
Jiri Chmelik

Brno University of Technology: Brno, South Moravian Region, CZ

2008-06-23 to 2011-06-13 | Bc. (Department of Microelectronics)
Education
Source: Self-asserted source
Jiri Chmelik

Works (39)

Comparison of Spine Segmentation Algorithms on Clinical Data from Spectral CT of Patients with Multiple Myeloma

IFMBE Proceedings
2024 | Journal article
DOI: 10.1007/978-3-031-49062-0_34
WOSUID: WOS:001261436400034
Contributors: Nohel, Michal; Jakubicek, Roman; Blazkova, Lenka; Valek, Vlastimil; Dostal, Marek; Ourednicek, Petr; Chmelik, Jiri
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Deep-Learning Based Automatic Determination of Cardiac Planes in Survey MRI Data

IFMBE Proceedings
2024 | Journal article
DOI: 10.1007/978-3-031-49062-0_31
WOSUID: WOS:001261436400031
Contributors: Jurca, Jan; Harabis, Vratislav; Jakubicek, Roman; Holecek, Tomas; Nemcekova, Petra; Ourednicek, Petr; Chmelik, Jiri
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Establishing the Optimal Standard for Preprocessing Head CT Data in Diagnostic Analysis

IFMBE Proceedings
2024 | Journal article
DOI: 10.1007/978-3-031-49068-2_18
WOSUID: WOS:001261437100018
Contributors: Nemcekova, Petra; Holecek, Tomas; Chmelik, Jiri; Ourednicek, Petr; Valis, Katerina; Jakubicek, Roman
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Evaluation of the Spatial Structure of Windbreaks from Digital Photography

Journal of Ecological Engineering
2024-10-01 | Journal article
DOI: 10.12911/22998993/192473
Contributors: Josef Kučera; Petra Fukalová; Petra Fukalová; Hana Středová; Martin Blecha; Roman Jakubiček; Jiří Chmelík; Jana Podhrázská; Tomáš Středa
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Crossref

Radon Transform-Based 3D Reconstruction of Brain Vasculature from 2D Angiography

2024-05-20 | Conference paper
DOI: 10.1109/ELEKTRO60337.2024.10557115
Contributors: Adam Skrvan; Robert Hudec; Jana Sturekova; Vratislav Harabiš; Jiri Chmelik
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Deep Learning for Automatic Bone Marrow Apparent Diffusion Coefficient Measurements From Whole-Body Magnetic Resonance Imaging in Patients With Multiple Myeloma A Retrospective Multicenter Study

Investigative Radiology
2023 | Journal article
DOI: 10.1097/RLI.0000000000000932
WOSUID: WOS:000958267800004
Contributors: Wennmann, Markus; Neher, Peter; Stanczyk, Nikolas; Kahl, Kim-Celine; Kaechele, Jessica; Weru, Vivienn; Hielscher, Thomas; Groezinger, Martin; Chmelik, Jiri; Zhang, Kevin Sun et al.
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In Vivo Repeatability and Multiscanner Reproducibility of MRI Radiomics Features in Patients With Monoclonal Plasma Cell Disorders A Prospective Bi-institutional Study

Investigative Radiology
2023 | Journal article
DOI: 10.1097/RLI.0000000000000927
WOSUID: WOS:000958267800002
Contributors: Wennmann, Markus; Bauer, Fabian; Klein, Andre; Chmelik, Jiri; Groezinger, Martin; Rotkopf, Lukas T. T.; Neher, Peter; Gnirs, Regula; Kurz, Felix T. T.; Nonnenmacher, Tobias et al.
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Prediction of Bone Marrow Biopsy Results From MRI in Multiple Myeloma Patients Using Deep Learning and Radiomics

Investigative Radiology
2023 | Journal article
DOI: 10.1097/RLI.0000000000000986
WOSUID: WOS:001071299400007
Contributors: Wennmann, Markus; Ming, Wenlong; Bauer, Fabian; Chmelik, Jiri; Klein, Andre; Uhlenbrock, Charlotte; Groezinger, Martin; Kahl, Kim-Celine; Nonnenmacher, Tobias; Debic, Manuel et al.
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Assessment of retinal vein pulsation through video-ophthalmoscopy and simultaneous biosignals acquisition

Biomedical Optics Express
2023-06-01 | Journal article
DOI: 10.1364/BOE.486052
Contributors: Radim Kolar; Tomas Vicar; Jiri Chmelik; Roman Jakubicek; Jan Odstrcilik; Eva Valterova; Michal Nohel; Karolina Skorkovska; Ralf P. Tornow
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Demolded hollow high aspect-ratio parylene-C micropillars for real-time mechanosensing applications

Applied Materials Today
2023-04 | Journal article
DOI: 10.1016/j.apmt.2023.101736
Contributors: Larisa Chmelikova; Peter Fecko; Jiri Chmelik; Josef Skacel; Alexandr Otahal; Zdenka Fohlerova
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Combining Deep Learning and Radiomics for Automated, Objective, Comprehensive Bone Marrow Characterization From Whole-Body MRI A Multicentric Feasibility Study

Investigative Radiology
2022 | Journal article
DOI: 10.1097/RLI.0000000000000891
WOSUID: WOS:000863907000006
Contributors: Wennmann, Markus; Klein, Andre; Bauer, Fabian; Chmelik, Jiri; Groezinger, Martin; Uhlenbrock, Charlotte; Lochner, Jakob; Nonnenmacher, Tobias; Rotkopf, Lukas Thomas; Sauer, Sandra et al.
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Cancer cell viscoelasticity measurement by quantitative phase and flow stress induction

Biophysical Journal
2022-05 | Journal article
DOI: 10.1016/j.bpj.2022.04.002
Contributors: Tomas Vicar; Jiri Chmelik; Jiri Navratil; Radim Kolar; Larisa Chmelikova; Vratislav Cmiel; Jiri Jagos; Ivo Provaznik; Michal Masarik; Jaromir Gumulec
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Automatic analysis of magnetic resonance imaging in multiple myeloma patients: deep-learning based pelvic bone marrow segmentation and radiomics analysis for prediction of plasma cell infiltration

Clinical Lymphoma Myeloma and Leukemia
2021 | Journal article
WOSUID: WOS:000717640800079
Contributors: Wennmann, Markus; Klein, Andre; Bauer, Fabian; Chmelik, Jiri; Uhlenbrock, Charlotte; Groezinger, Martin; Rotkopf, Lukas; Sauer, Sandra; Thierjung, Heidi; Goetz, Michael et al.
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Automatic bone marrow segmentation in whole-body magnetic resonance imaging: towards comprehensive, objective MRI-phenotypic bone marrow characterization in multiple myeloma

Clinical Lymphoma Myeloma and Leukemia
2021 | Journal article
WOSUID: WOS:000717640800073
Contributors: Wennmann, Markus; Chmelik, Jiri; Bauer, Fabian; Klein, Andre; Uhlenbrock, Charlotte; Lochner, Jakob; Groezinger, Martin; Rotkopf, Lukas; Sauer, Sandra; Bonekamp, David et al.
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Parametric Deconvolution for Cancer Cells Viscoelasticity Measurements from Quantitative Phase Images

Annual International Conference of the IEEE Engineering in Medicine and Biology
2021 | Conference paper
DOI: 10.1109/EMBC46164.2021.9630524
WOSUID: WOS:000760910500102
Contributors: Vicar, Tomas; Gumulec, Jaromir; Kolar, Radim; Chmelik, Jiri; Navratil, Jiri; Chmelikova, Larisa; Cmiel, Vratislav; Provaznik, Ivo; Masarik, Michal
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Radiomics model of pelvic bone marrow in MRI for prediction of plasma cell infiltration in multiple myeloma patients

Oncology Research and Treatment
2021 | Journal article
WOSUID: WOS:000760622600148
Contributors: Uhlenbrock, C. S.; Wennmann, M.; Klein, A.; Bauer, F.; Chmelik, J.; Groezinger, M.; Rotkopf, L.; Goetz, M.; Thierjung, H.; Sauer, S. et al.
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VERSE : A Vertebrae labelling and segmentation benchmark for multi-detector CT images

Medical Image Analysis
2021 | Journal article
DOI: 10.1016/J.MEDIA.2021.102166
WOSUID: WOS:000697062100007
Contributors: Sekuboyina, Anjany; Husseini, Malek E.; Bayat, Amirhossein; Loeffler, Maximilian; Liebl, Hans; Li, Hongwei; Tetteh, Giles; Kukacka, Jan; Payer, Christian; Stern, Darko et al.
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Self-supervised pretraining for transferable quantitative phase image cell segmentation

Biomedical Optics Express
2021-10-01 | Journal article
DOI: 10.1364/BOE.433212
Contributors: Tomas Vicar; Jiri Chmelik; Roman Jakubicek; Larisa Chmelikova; Jaromir Gumulec; Jan Balvan; Ivo Provaznik; Radim Kolar
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Crossref

Cancer Cells Viscoelasticity Measurement by Quantitative Phase and Flow Stress Induction

2021-08-06 | Other
DOI: 10.1101/2021.08.05.455201
Contributors: Tomas Vicar; Jaromir Gumulec; Jiri Chmelik; Jiri Navratil; Radim Kolar; Larisa Chmelikova; Vratislav Cmiel; Ivo Provaznik; Michal Masarik
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Self-Supervised Pretraining for Transferable Quantitative Phase Image Cell Segmentation

2021-05-25 | Other
DOI: 10.1101/2021.05.24.445397
Contributors: Tomas Vicar; Jiri Chmelik; Roman Jakubicek; Larisa Chmelikova; Jaromir Gumulec; Jan Balvan; Ivo Provaznik; Radim Kolar
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Parametric Deconvolution for Cancer Cells Viscoelasticity Measurements from Quantitative Phase Images

2021-04-08 | Preprint
DOI: 10.1101/2021.04.06.438595
Contributors: Tomas Vicar; Jaromir Gumulec; Radim Kolar; Jiri Chmelik; Jiri Navratil; Larisa Chmelikova; Vratislav Cmiel; Ivo Provaznik; Michal Masarik
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A Tool for Automatic Estimation of Patient Position in Spinal CT Data

ArXiv
2020 | Journal article
WOSUID: PPRN:22085388
Contributors: Jakubicek, Roman; Vicar, Tomas; Chmelik, Jiri
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Learning-based vertebra localization and labeling in 3D CT data of possibly incomplete and pathological spines

Computer Methods and Programs in Biomedicine
2020 | Journal article
DOI: 10.1016/J.CMPB.2019.105081
WOSUID: WOS:000498062700016
Contributors: Jakubicek, Roman; Chmelik, Jiri; Jan, Jiri; Ourednicek, Petr; Lambert, Lukas; Gavelli, Giampaolo
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Localization and classification of intracranialhemorrhages in CT data

ArXiv
2020 | Journal article
WOSUID: PPRN:13142771
Contributors: Nemcek, Jakub; Jakubicek, Roman; Chmelik, Jiri
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Deep-learning-based fully automatic spine centerline detection in CT data

Proceedings of the IEEE Engineering in Medicine and Biology Conference
2019 | Journal article
DOI: 10.1109/EMBC.2019.8856528
WOSUID: WOS:000557295302190
Contributors: Jakubicek, Roman; Chmelik, Jiri; Ourednicek, Petr; Jan, Jiri
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Fully automatic CAD system for segmentation and classification of spinal metastatic lesions in CT data

IFMBE Proceedings
2019 | Conference paper
DOI: 10.1007/978-981-10-9035-6_28
EID:

2-s2.0-85048294868
Contributors: Chmelik, J.; Jakubicek, R.; Jan, J.; Ourednicek, P.; Lambert, L.; Amadori, E.; Gavelli, G.
Source: Self-asserted source
Jiri Chmelik via Scopus - Elsevier
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Fully automatic CAD system for spine localisation and vertebra segmentation in CT data

IFMBE Proceedings
2019 | Conference paper
DOI: 10.1007/978-981-10-9035-6_40
EID:

2-s2.0-85048290809
Contributors: Jakubicek, R.; Chmelik, J.; Jan, J.; Ourednicek, P.; Lambert, L.; Gavelli, G.
Source: Self-asserted source
Jiri Chmelik via Scopus - Elsevier
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Iterative machine learning based rotational alignment of brain 3D CT data

Proceedings of the IEEE Engineering in Medicine and Biology Conference
2019 | Journal article
DOI: 10.1109/EMBC.2019.8857858
WOSUID: WOS:000557295304193
Contributors: Chmelik, Jiri; Jakubicek, Roman; Vicar, Tomas; Walek, Petr; Ourednicek, Petr; Jan, Jiri
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Modern semi-automatic set-up for testing cell migration with impact for therapy of myocardial infarction

IFMBE Proceedings
2019 | Conference paper
DOI: 10.1007/978-981-10-9023-3_28
EID:

2-s2.0-85048272656
Contributors: Baiazitova, L.; Skopalik, J.; Cmiel, V.; Chmelik, J.; Svoboda, O.; Provaznik, I.
Source: Self-asserted source
Jiri Chmelik via Scopus - Elsevier
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The Effect of Rhodamine-Derived Superparamagnetic Maghemite Nanoparticles on the Motility of Human Mesenchymal Stem Cells and Mouse Embryonic Fibroblast Cells

Molecules
2019 | Journal article
DOI: 10.3390/MOLECULES24071192
WOSUID: WOS:000464946300001
Contributors: Baiazitova, Larisa; Skopalik, Josef; Chmelik, Jiri; Zumberg, Inna; Cmiel, Vratislav; Polakova, Katerina; Provaznik, Ivo
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Automatic Segmentation of Myocardial Infarction in Rats Subjected to Regional Ischemia

Computing in Cardiology Conference (CinC)
2018 | Conference paper
DOI: 10.22489/CINC.2018.128
WOSUID: WOS:000482598700116
Contributors: Jakubicek, R.; Chmelik, J.; Neckar, J.; Kolar, R.
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Deep convolutional neural network-based segmentation and classification of difficult to define metastatic spinal lesions in 3D CT data

Medical Image Analysis
2018 | Journal article
DOI: 10.1016/J.MEDIA.2018.07.008
WOSUID: WOS:000446286600007
Contributors: Chmelik, Jiri; Jakubicek, Roman; Walek, Petr; Jan, Jiri; Ourednicek, Petr; Lambert, Lukas; Amadori, Elena; Gavelli, Giampaolo
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Spine Lesion Analysis in 3D CT Data - Reporting on Research Progress

AIP Conference Proceedings
2018 | Conference paper
DOI: 10.1063/1.5034253
WOSUID: WOS:000434177600001
Contributors: Jan, Jiri; Chmelik, Jiri; Jakubicek, Roman; Ourednicek, Petr; Amadori, Elena; Gavelli, Giampaolo
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Tumorous Spinal Lesions: Computer Aided Diagnosis and Evaluation Based on CT Data - A Review

Current Medical Imaging
2018 | Journal article
DOI: 10.2174/1573405613666170331102245
WOSUID: WOS:000443684600003
Contributors: Chmelik, Jiri; Jakubicek, Roman; Jan, Jiri
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Vertebrae segmentation in 3D CT data: A review of methods and evaluation approaches

Current Medical Imaging Reviews
2018 | Journal article
DOI: 10.2174/1573405613666170622120228
EID:

2-s2.0-85056579692
Contributors: Jakubicek, R.; Chmelik, J.; Jan, J.
Source: Self-asserted source
Jiri Chmelik via Scopus - Elsevier

SVM Based ECG Classification Using Rhythm and Morphology Features, Cluster Analysis and Multilevel Noise Estimation

Computing in Cardiology Conference (CinC)
2017 | Conference paper
DOI: 10.22489/CINC.2017.172-200
WOSUID: WOS:000450651100150
Contributors: Smisek, Radovan; Hejc, Jakub; Ronzhina, Marina; Nemcova, Andrea; Marsanova, Lucie; Chmelik, Jiri; Kolarova, Jana; Provaznik, Ivo; Smital, Lukas; Vitek, Martin
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Accurate micro-computed tomography imaging of pore spaces in collagen-based scaffold

Journal of Materials Science: Materials in Medicine
2016 | Journal article
DOI: 10.1007/S10856-016-5717-2
WOSUID: WOS:000377373200011
Contributors: Zidek, Jan; Vojtova, Lucy; Abdel-Mohsen, A. M.; Chmelik, Jiri; Zikmund, Tomas; Brtnikova, Jana; Jakubicek, Roman; Zubal, Lukas; Jan, Jiri; Kaiser, Jozef
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Characterization of Cells Migration through Cardiac Tissue using Advanced Microscopy Techniques and Matlab Simulation

Computing in Cardiology Conference (CinC)
2015 | Conference paper
DOI: 10.1109/CIC.2015.7411113
WOSUID: WOS:000380374700283
Contributors: Baiazitova, Larisa; Skopalik, Josef; Cmiel, Vratislav; Chmelik, Jiri; Svoboda, Ondrej; Fohlerova, Zdenka; Hubalek, Jaromir; Provaznik, Ivo
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Combined bone lesion analysis in 3D CT data of vertebrae

Annual International Conference of the IEEE Engineering in Medicine and Biology
2015 | Conference paper
DOI: 10.1109/EMBC.2015.7319851
WOSUID: WOS:000371717206159
Contributors: Jan, J.; Novosadova, M.; Demel, J.; Ourednicek, P.; Chmelik, J.; Jakubicek, R.
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Peer review (42 reviews for 16 publications/grants)

Review activity for Annual International Conference of the IEEE Engineering in Medicine and Biology Society. (1)
Review activity for Artificial intelligence in medicine. (2)
Review activity for BMC medical imaging (1)
Review activity for Computer methods and programs in biomedicine. (9)
Review activity for Computer methods and programs in biomedicine. (1)
Review activity for Computerized medical imaging and graphics. (1)
Review activity for Electronics. (1)
Review activity for EURASIP Journal on Advances in Signal Processing. (3)
Review activity for Frontiers in artificial intelligence. (1)
Review activity for Journal of electrical and computer engineering. (1)
Review activity for Journal of King Saud University. (1)
Review activity for Medical image analysis. (2)
Review activity for Proceedings of the annual international conference of the IEEE Engineering in Medicine and Biology Society. (6)
Review activity for Radioengineering. (9)
Review activity for Scientific reports. (1)
Review activity for Sensors. (2)
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