Personal information

Other IDs

Scopus Author ID: 18134080900
ResearcherID: F-4920-2017

Keywords

elixir-europe, elixir-ee

Countries

Estonia

Activities

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Employment (3)

University of Tartu: Tartu, EE

2022-01-01 to present | Professor of Bioinformatics (Institute of Computer Science)
Employment
Source: Self-asserted source
Hedi Peterson

University of Tartu: Tartu, EE

2013-12-01 to 2021-12-31 | Associate Professor / ELIXIR coordinator (Institute of Computer Science)
Employment
Source: Self-asserted source
Hedi Peterson

Quretec: Tartu, EE

2013-12-01 to 2020-03-31 | Lead Researcher
Employment
Source: Self-asserted source
Hedi Peterson

Education and qualifications (1)

University of Tartu: Tartu, EE

PhD in Bioinformatics
Qualification
Source: Self-asserted source
Hedi Peterson

Works (26)

g:Profiler—interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)

Nucleic Acids Research
2023-07-05 | Journal article
DOI: 10.1093/nar/gkad347
Contributors: Liis Kolberg; Uku Raudvere; Ivan Kuzmin; Priit Adler; Jaak Vilo; Hedi Peterson
Source: check_circle
Crossref

Untargeted metabolomics profiling in pediatric patients and adult populations indicates a connection between lipid imbalance and epilepsy

2023-03-30 | Preprint
DOI: 10.1101/2023.03.29.23287640
Contributors: Kaisa Teele Oja; Mihkel Ilisson; Karit Reinson; Kai Muru; Tiia Reimand; Hedi Peterson; Dmytro Fishman; Tõnu Esko; Toomas Haller; Jaanika Kronberg et al.
Source: check_circle
Crossref

Graves' disease-associated TSHR gene is demethylated and expressed in human regulatory T cells

2022-10-25 | Preprint
DOI: 10.1101/2022.10.24.513489
Contributors: Ahto Salumets; Liina Tserel; Silva Kasela; Maia Limbach; Lili Milani; Hedi Peterson; Kai Kisand; Part Peterson
Source: check_circle
Crossref

gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler [version 2; peer review: 2 approved]

2020-11-17 | Journal article
DOI: 10.12688/f1000research.24956.2
Part of ISSN: 2046-1402
Contributors: Liis Kolberg; Uku Raudvere; Ivan Kuzmin; Jaak Vilo; Hedi Peterson
Source: check_circle
F1000

Co-expression analysis reveals interpretable gene modules controlled bytrans-acting genetic variants

2020-04-24 | Preprint
DOI: 10.1101/2020.04.22.055335
Contributors: Liis Kolberg; Nurlan Kerimov; Hedi Peterson; Kaur Alasoo
Source: check_circle
Crossref

PAWER: Protein Array Web ExploreR

2019-07-04 | Other
DOI: 10.1101/692905
Contributors: Dmytro Fishman; Ivan Kuzmin; Priit Adler; Jaak Vilo; Hedi Peterson
Source: check_circle
Crossref

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Nucleic Acids Research
2019-07-02 | Journal article
DOI: 10.1093/nar/gkz369
Contributors: Uku Raudvere; Liis Kolberg; Ivan Kuzmin; Tambet Arak; Priit Adler; Hedi Peterson; Jaak Vilo
Source: check_circle
Crossref

funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data

BMC Genomics
2018-12 | Journal article
DOI: 10.1186/s12864-018-5176-x
Contributors: Liis Kolberg; Ivan Kuzmin; Priit Adler; Jaak Vilo; Hedi Peterson
Source: check_circle
Crossref

Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay

Archives of Toxicology
2017 | Journal article
DOI: 10.1007/s00204-016-1690-2
EID:

2-s2.0-84961659642
Contributors: Colaianna, M.; Ilmjärv, S.; Peterson, H.; Kern, I.; Julien, S.; Baquié, M.; Pallocca, G.; Bosgra, S.; Sachinidis, A.; Hengstler, J.G. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

AIRE-Deficient Patients Harbor Unique High-Affinity Disease-Ameliorating Autoantibodies

Cell
2016 | Journal article
DOI: 10.1016/j.cell.2016.06.024
EID:

2-s2.0-84978877977
Contributors: Meyer, S.; Woodward, M.; Hertel, C.; Vlaicu, P.; Haque, Y.; Kärner, J.; Macagno, A.; Onuoha, S.C.; Fishman, D.; Peterson, H. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer

Reproductive BioMedicine Online
2016 | Journal article
DOI: 10.1016/j.rbmo.2016.03.004
EID:

2-s2.0-84963667992
Contributors: Altmäe, S.; Tamm-Rosenstein, K.; Esteban, F.J.; Simm, J.; Kolberg, L.; Peterson, H.; Metsis, M.; Haldre, K.; Horcajadas, J.A.; Salumets, A. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Tools and data services registry: A community effort to document bioinformatics resources

Nucleic Acids Research
2016 | Journal article
DOI: 10.1093/nar/gkv1116
EID:

2-s2.0-84976872277
Contributors: Ison, J.; Rapacki, K.; Ménager, H.; Kalaš, M.; Rydza, E.; Chmura, P.; Anthon, C.; Beard, N.; Berka, K.; Bolser, D. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

“Watching the Detectives” report of the general assembly of the EU project DETECTIVE Brussels, 24–25 November 2015

Archives of Toxicology
2016 | Journal article
DOI: 10.1007/s00204-016-1719-6
EID:

2-s2.0-84964596005
Contributors: Fernando, R.N.; Chaudhari, U.; Escher, S.E.; Hengstler, J.G.; Hescheler, J.; Jennings, P.; Keun, H.C.; Kleinjans, J.C.S.; Kolde, R.; Kollipara, L. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection

Biomaterials
2015 | Journal article
DOI: 10.1016/j.biomaterials.2015.02.094
EID:

2-s2.0-84927942085
Contributors: Cosset, É.; Martinez, Y.; Preynat-Seauve, O.; Lobrinus, J.-A.; Tapparel, C.; Cordey, S.; Peterson, H.; Petty, T.J.; Colaianna, M.; Tieng, V. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Human embryonic stem cell-derived test systems for developmental neurotoxicity: A transcriptomics approach

Archives of Toxicology
2013 | Journal article
DOI: 10.1007/s00204-012-0967-3
EID:

2-s2.0-84872346334
Contributors: Krug, A.K.; Kolde, R.; Gaspar, J.A.; Rempel, E.; Balmer, N.V.; Meganathan, K.; Vojnits, K.; Baquié, M.; Waldmann, T.; Ensenat-Waser, R. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

The relationship between brain tumor cell invasion of engineered neural tissues and invivo features of glioblastoma

Biomaterials
2013 | Journal article
DOI: 10.1016/j.biomaterials.2013.07.006
EID:

2-s2.0-84881664356
Contributors: Nayernia, Z.; Turchi, L.; Cosset, E.; Peterson, H.; Dutoit, V.; Dietrich, P.-Y.; Tirefort, D.; Chneiweiss, H.; Lobrinus, J.-A.; Krause, K.-H. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of toll-like receptor 4

Journal of Biological Chemistry
2011 | Journal article
DOI: 10.1074/jbc.M110.213561
EID:

2-s2.0-79960691435
Contributors: Tserel, L.; Runnel, T.; Kisand, K.; Pihlap, M.; Bakhoff, L.; Kolde, R.; Peterson, H.; Vilo, J.; Peterson, P.; Rebane, A.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells

PLoS ONE
2010 | Journal article
DOI: 10.1371/journal.pone.0010709
EID:

2-s2.0-77956269672
Contributors: Jung, M.; Peterson, H.; Chavez, L.; Kahlem, P.; Lehrach, H.; Vilo, J.; Adjaye, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

Genome Biology
2010 | Journal article
DOI: 10.1186/gb-2010-11-8-r80
EID:

2-s2.0-77955121141
Contributors: Billon, N.; Kolde, R.; Reimand, J.; Monteiro, M.C.; Kull, M.; Peterson, H.; Tretyakov, K.; Adler, P.; Wdziekonski, B.; Vilo, J. et al.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells

BMC Genomics
2010 | Journal article
DOI: 10.1186/1471-2164-11-642
EID:

2-s2.0-78349261569
Contributors: Tserel, L.; Kolde, R.; Rebane, A.; Kisand, K.; Org, T.; Peterson, H.; Vilo, J.; Peterson, P.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

Genome Biology
2009 | Journal article
DOI: 10.1186/gb-2009-10-12-r139
EID:

2-s2.0-76249090486
Contributors: Adler, P.; Kolde, R.; Kull, M.; Tkachenko, A.; Peterson, H.; Reimand, J.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

Ranking genes by their co-expression to subsets of pathway members

Annals of the New York Academy of Sciences
2009 | Book
DOI: 10.1111/j.1749-6632.2008.03747.x
EID:

2-s2.0-63849156615
Contributors: Adler, P.; Peterson, H.; Agius, P.; Reimand, J.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

VisHiC - Hierarchical functional enrichment analysis of microarray data

Nucleic Acids Research
2009 | Journal article
DOI: 10.1093/nar/gkp435
EID:

2-s2.0-67849092444
Contributors: Krushevskaya, D.; Peterson, H.; Reimand, J.; Kull, M.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Nucleic acids research
2008 | Journal article
DOI: 10.1093/nar/gkn230
EID:

2-s2.0-48449099258
Contributors: Reimand, J.; Tooming, L.; Peterson, H.; Adler, P.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

KEGGanim: Pathway animations for high-throughput data

Bioinformatics
2008 | Journal article
DOI: 10.1093/bioinformatics/btm581
EID:

2-s2.0-39149098854
Contributors: Adler, P.; Reimand, J.; Jünes, J.; Kolde, R.; Peterson, H.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier

G:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments

Nucleic Acids Research
2007 | Journal article
DOI: 10.1093/nar/gkm226
EID:

2-s2.0-34547571030
Contributors: Reimand, J.; Kull, M.; Peterson, H.; Hansen, J.; Vilo, J.
Source: Self-asserted source
Hedi Peterson via Scopus - Elsevier
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