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Works (34)

Evolutionary divergent kinetoplast genome structure and RNA editing patterns in the trypanosomatid Vickermania

Proceedings of the National Academy of Sciences
2025-04-15 | Journal article
DOI: 10.1073/pnas.2426887122
Contributors: Evgeny S. Gerasimov; Dmitry A. Afonin; Ingrid Škodová-Sveráková; Andreu Saura; Natália Trusina; Ondřej Gahura; Alexandra Zakharova; Anzhelika Butenko; Peter Baráth; Anton Horváth et al.
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Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment

Nucleic Acids Research
2024-04-24 | Journal article
DOI: 10.1093/nar/gkae168
Contributors: Dmitry A Afonin; Evgeny S Gerasimov; Ingrid Škodová-Sveráková; Kristína Záhonová; Ondřej Gahura; Amanda T S Albanaz; Eva Myšková; Anastassia Bykova; Zdeněk Paris; Julius Lukeš et al.
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Crossref

Phylogenetic framework to explore trait evolution in Trypanosomatidae

Trends in Parasitology
2024-02 | Journal article
DOI: 10.1016/j.pt.2023.11.009
Contributors: Alexei Yu. Kostygov; Amanda T.S. Albanaz; Anzhelika Butenko; Evgeny S. Gerasimov; Julius Lukeš; Vyacheslav Yurchenko
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Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae

BMC Genomics
2023-08-21 | Journal article
DOI: 10.1186/s12864-023-09591-z
Contributors: Amanda T. S. Albanaz; Mark Carrington; Alexander O. Frolov; Anna I. Ganyukova; Evgeny S. Gerasimov; Alexei Y. Kostygov; Julius Lukeš; Marina N. Malysheva; Jan Votýpka; Alexandra Zakharova et al.
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Kinetoplast Genome of <i>Leishmania</i> spp. Is under Strong Purifying Selection

Tropical Medicine and Infectious Disease
2023-07 | Journal article | Author
DOI: 10.3390/tropicalmed8080384
Contributors: Evgeny Gerasimov; Tatiana S. Novozhilova; Sara L. Zimmer; Vyacheslav Yurchenko
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Multidisciplinary Digital Publishing Institute
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Dynamics of Podospora anserina Genome Evolution in a Long-Term Experiment

International Journal of Molecular Sciences
2023-07-27 | Journal article
DOI: 10.3390/ijms241512009
Contributors: Olga A. Kudryavtseva; Evgeny S. Gerasimov; Elena S. Glagoleva; Anna A. Gasparyan; Saveliy M. Agroskin; Mikhail A. Belozersky; Yakov E. Dunaevsky
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Crossref
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Trypanosoma cruzi strain and starvation-driven mitochondrial RNA editing and transcriptome variability

RNA
2022-07 | Journal article
DOI: 10.1261/rna.079088.121
Contributors: Evgeny S. Gerasimov; Roger Ramirez-Barrios; Vyacheslav Yurchenko; Sara L. Zimmer
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Crossref

Analyses of <i>Leishmania</i>-LRV Co-Phylogenetic Patterns and Evolutionary Variability of Viral Proteins

Viruses
2021-11 | Journal article | Author
DOI: 10.3390/v13112305
Contributors: Alexei Yu. Kostygov; Danyil Grybchuk; Yulia Kleschenko; Daniil S. Chistyakov; Alexander N. Lukashev; Evgeny Gerasimov; Vyacheslav Yurchenko
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Multidisciplinary Digital Publishing Institute
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Complete minicircle genome of Leptomonas pyrrhocoris reveals sources of its non-canonical mitochondrial RNA editing events

Nucleic Acids Research
2021-04-06 | Journal article
DOI: 10.1093/nar/gkab114
Contributors: Evgeny S Gerasimov; Anna A Gasparyan; Dmitry A Afonin; Sara L Zimmer; Natalya Kraeva; Julius Lukeš; Vyacheslav Yurchenko; Alexander Kolesnikov
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Crossref

Genome Analysis of <i>Endotrypanum</i> and <i>Porcisia</i> spp., Closest Phylogenetic Relatives of <i>Leishmania</i>, Highlights the Role of Amastins in Shaping Pathogenicity

Genes
2021-03 | Journal article | Author
DOI: 10.3390/genes12030444
Contributors: Amanda T. S. Albanaz; Evgeny Gerasimov; Jeffrey J. Shaw; Jovana Sádlová; Julius Lukes; Petr Volf; Fred Opperdoes; Alexei Yu. Kostygov; Anzhelika Butenko; Vyacheslav Yurchenko
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Multidisciplinary Digital Publishing Institute
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The Remarkable Metabolism of <i>Vickermania ingenoplastis</i>: Genomic Predictions

Pathogens
2021-01 | Journal article | Author
DOI: 10.3390/pathogens10010068
Contributors: Fred Opperdoes; Anzhelika Butenko; Alexandra Zakharova; Evgeny Gerasimov; Sara L. Zimmer; Julius Lukes; Vyacheslav Yurchenko
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Multidisciplinary Digital Publishing Institute
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Aging Induces Profound Changes in sncRNA in Rat Sperm and These Changes Are Modified by Perinatal Exposure to Environmental Flame Retardant

International Journal of Molecular Sciences
2020-11 | Journal article | Author
DOI: 10.3390/ijms21218252
Contributors: Alexander Suvorov; Richard Pilsner; Vladimir Naumov; Victoria Shtratnikova; Anna Zheludkevich; Evgeny Gerasimov; Maria Logacheva; Oleg Sergeyev
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Multidisciplinary Digital Publishing Institute
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Common Structural Patterns in the Maxicircle Divergent Region of Trypanosomatidae

Pathogens
2020-02 | Journal article | Author
DOI: 10.3390/pathogens9020100
Contributors: Evgeny Gerasimov; Ksenia A. Zamyatnina; Nadezda S. Matveeva; Yulia A. Rudenskaya; Natalya Kraeva; Alexander A. Kolesnikov; Vyacheslav Yurchenko
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Multidisciplinary Digital Publishing Institute
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Rat liver epigenome programing by perinatal exposure to 2,2',4'4'-tetrabromodiphenyl ether.

Epigenomics
2019-12 | Journal article
DOI: 10.2217/epi-2019-0315
PMID: 31833787
Contributors: Suvorov A; Naumov V; Shtratnikova V; Logacheva M; Shershebnev A; Wu H; Gerasimov E; Zheludkevich A; Pilsner JR; Sergeyev O
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Genomic Variation among Strains of Crithidia bombi and C. expoeki.

mSphere
2019-09 | Journal article
DOI: 10.1128/mSphere.00482-19
PMID: 31511368
PMC: PMC6739494
Contributors: Gerasimov E; Zemp N; Schmid-Hempel R; Schmid-Hempel P; Yurchenko V
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Comparative Analysis of Developmental Transcriptome Maps of Arabidopsis thaliana and Solanum lycopersicum.

Genes
2019-01 | Journal article
DOI: 10.3390/genes10010050
PMID: 30650673
PMC: PMC6356586
Contributors: Penin AA; Klepikova AV; Kasianov AS; Gerasimov ES; Logacheva MD
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Recombination in a natural population of the bdelloid rotifer Adineta vaga

2018-12 | Other
DOI: 10.1101/489393
OTHER-ID:

PPR65112
Contributors: Vakhrusheva OA; Mnatsakanova EA; Galimov YR; Neretina TV; Gerasimov ES; Ozerova SG; Zalevsky AO; Yushenova IA; Arkhipova IR; Penin AA et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Gene expression to mitochondrial metabolism: Variability among cultured Trypanosoma cruzi strains.

PloS one
2018-05 | Journal article
DOI: 10.1371/journal.pone.0197983
PMID: 29847594
PMC: PMC5976161
Contributors: Kalem MC; Gerasimov ES; Vu PK; Zimmer SL
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Nucleic acids research
2018-01 | Journal article
DOI: 10.1093/nar/gkx1202
PMID: 29220521
PMC: PMC5778460
Contributors: Gerasimov ES; Gasparyan AA; Kaurov I; Tichý B; Logacheva MD; Kolesnikov AA; Lukeš J; Yurchenko V; Zimmer SL; Flegontov P
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Evolution of the Genome 3D Organization: Comparison of Fused and Segregated Globin Gene Clusters.

Molecular biology and evolution
2017-06 | Journal article
DOI: 10.1093/molbev/msx100
PMID: 28333290
Contributors: Kovina AP; Petrova NV; Gushchanskaya ES; Dolgushin KV; Gerasimov ES; Galitsyna AA; Penin AA; Flyamer IM; Ioudinkova ES; Gavrilov AA et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution.

The Plant journal : for cell and molecular biology
2017-06 | Journal article
DOI: 10.1111/tpj.13563
PMID: 28387959
Contributors: Kasianov AS; Klepikova AV; Kulakovskiy IV; Gerasimov ES; Fedotova AV; Besedina EG; Kondrashov AS; Logacheva MD; Penin AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Minicircle Kinetoplast Genome of Insect Trypanosomatid Leptomonas pyrrhocoris.

Biochemistry. Biokhimiia
2017-05 | Journal article
DOI: 10.1134/s0006297917050054
PMID: 28601067
Contributors: Gerasimov ES; Gasparyan AA; Litus IA; Logacheva MD; Kolesnikov AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling.

The Plant journal : for cell and molecular biology
2016-11 | Journal article
DOI: 10.1111/tpj.13312
PMID: 27549386
Contributors: Klepikova AV; Kasianov AS; Gerasimov ES; Logacheva MD; Penin AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania.

Scientific reports
2016-03 | Journal article
DOI: 10.1038/srep23704
PMID: 27021793
PMC: PMC4810370
Contributors: Flegontov P; Butenko A; Firsov S; Kraeva N; Eliáš M; Field MC; Filatov D; Flegontova O; Gerasimov ES; Hlaváčová J et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.

Scientific reports
2016-02 | Journal article
DOI: 10.1038/srep20768
PMID: 26865217
PMC: PMC4750364
Contributors: Flegontov P; Changmai P; Zidkova A; Logacheva MD; Altınışık NE; Flegontova O; Gelfand MS; Gerasimov ES; Khrameeva EE; Konovalova OP et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Gene Loss and Error-Prone RNA Editing in the Mitochondrion of Perkinsela, an Endosymbiotic Kinetoplastid.

mBio
2015-12 | Journal article
DOI: 10.1128/mBio.01498-15
PMID: 26628723
PMC: PMC4669381
Contributors: David V; Flegontov P; Gerasimov E; Tanifuji G; Hashimi H; Logacheva MD; Maruyama S; Onodera NT; Gray MW; Archibald JM et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry

2015-08 | Other
DOI: 10.1101/024554
OTHER-ID:

PPR31002
Contributors: Flegontov P; Changmai P; Zidkova A; Logacheva MD; Altinisik NE; Flegontova O; Gelfand MS; Gerasimov ES; Khrameeva EV; Konovalova OP et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

Molecular biology and evolution
2015-07 | Journal article
DOI: 10.1093/molbev/msv153
PMID: 26163667
PMC: PMC4576712
Contributors: Baranova MA; Logacheva MD; Penin AA; Seplyarskiy VB; Safonova YY; Naumenko SA; Klepikova AV; Gerasimov ES; Bazykin GA; James TY et al.
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages.

BMC genomics
2015-05 | Journal article
DOI: 10.1186/s12864-015-1570-9
PMID: 25994131
PMC: PMC4438637
Contributors: Leushkin EV; Logacheva MD; Penin AA; Sutormin RA; Gerasimov ES; Kochkina GA; Ivanushkina NE; Vasilenko OV; Kondrashov AS; Ozerskaya SM
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Diversity of mitochondrial genome organization.

Biochemistry. Biokhimiia
2012-12 | Journal article
DOI: 10.1134/s0006297912130020
PMID: 23379519
Contributors: Kolesnikov AA; Gerasimov ES
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

[Three patterns of trypanosomatid cryptogene structural organization].

Molekuliarnaia biologiia
2012-07 | Journal article
PMID: 23113350
Contributors: Gerasimov ES; Efimova NS; Kolesnikov AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

From cryptogene to gene? ND8 editing domain reduction in insect trypanosomatids.

European journal of protistology
2011-10 | Journal article
DOI: 10.1016/j.ejop.2011.09.002
PMID: 22014411
Contributors: Gerasimov ES; Kostygov AY; Yan S; Kolesnikov AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Selective amplification of maxicircle classes during the life cycle of Leishmania major.

Molecular and biochemical parasitology
2009-02 | Journal article
DOI: 10.1016/j.molbiopara.2009.01.014
PMID: 19428661
Contributors: Flegontov PN; Zhirenkina EN; Gerasimov ES; Ponirovsky EN; Strelkova MV; Kolesnikov AA
Source: Self-asserted source
Evgeny Gerasimov via Europe PubMed Central

Aging Induces Profound Changes in sncRNA in Rat Sperm and these Changes are Modified by Perinatal Exposure to Environmental Flame Retardant
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Multidisciplinary Digital Publishing Institute
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