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Loop profile: 820574
Scopus Author ID: 57202956432

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Employment (3)

Uppsala University: Uppsala, SE

2022-05-01 to present | Assistant professor (biträdande universitetslektor) (Department of Organismal Biology)
Employment
Source: Self-asserted source
Tobias Andermann

University of Gothenburg: Gothenburg, SE

2021-02-04 to 2022-04-30 | Postdoctor (Department of Biological and Environmental Sciences )
Employment
Source: Self-asserted source
Tobias Andermann

Västra Götalandsregionen: Gothenburg, SE

2015-07-01 to 2015-12-31 | Research Assistant (Gothenburg Botanical Garden)
Employment
Source: Self-asserted source
Tobias Andermann

Education and qualifications (3)

University of Gothenburg: Gothenburg, SE

2016-02-01 to present | PhD (Department of Biological and Environmental Sciences)
Education
Source: Self-asserted source
Tobias Andermann

University of Gothenburg: Gothenburg, SE

2013-09-02 to 2015-06-05 | Master of Science, Systematics and Biodiversity (Department of Biological and Environmental Sciences)
Education
Source: Self-asserted source
Tobias Andermann

University of Münster: Münster, DE

2009-10-01 to 2012-08-15 | Bachelor of Science, Biosciences (Institute for Evolution and Biodiversity)
Education
Source: Self-asserted source
Tobias Andermann

Works (34)

Properties and limitations of eDNA substrates for terrestrial animal monitoring

2024-10-10 | Preprint
DOI: 10.22541/au.172854903.36594897/v1
Contributors: Beilun Zhao; Tobias Andermann
Source: check_circle
Crossref

Deep learning segmentation model produces accurate biodiversity predictions at 10 m spatial resolution

2024-09-05 | Preprint
DOI: 10.21203/rs.3.rs-4734879/v1
Contributors: Tobias Andermann; Johan Häggmark; Patrik Olsson; Alice Högström
Source: check_circle
Crossref

Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)

Molecular Ecology
2024-08 | Journal article
DOI: 10.1111/mec.17446
Contributors: Sylvia Hofmann; Dennis Rödder; Tobias Andermann; Michael Matschiner; Jendrian Riedel; Chitra B. Baniya; Morris Flecks; Jianhuan Yang; Ke Jiang; Jiang Jianping et al.
Source: check_circle
Crossref

Undiscovered bird extinctions obscure the true magnitude of human-driven extinction waves

Nature Communications
2023-12-19 | Journal article
DOI: 10.1038/s41467-023-43445-2
Contributors: Rob Cooke; Ferran Sayol; Tobias Andermann; Tim M. Blackburn; Manuel J. Steinbauer; Alexandre Antonelli; Søren Faurby
Source: check_circle
Crossref

Madagascar’s extraordinary biodiversity: Evolution, distribution, and use

Science
2022-12-02 | Journal article
DOI: 10.1126/science.abf0869
Contributors: Alexandre Antonelli; Rhian J. Smith; Allison L. Perrigo; Angelica Crottini; Jan Hackel; Weston Testo; Harith Farooq; Maria F. Torres Jiménez; Niels Andela; Tobias Andermann et al.
Source: check_circle
Crossref

Recent and local diversification of Central American understorey palms

Global Ecology and Biogeography
2022-08 | Journal article
DOI: 10.1111/geb.13521
Contributors: Ángela Cano; Fred W. Stauffer; Tobias Andermann; Isabel M. Liberal; Alexander Zizka; Christine D. Bacon; Harri Lorenzi; Camille Christe; Mats Töpel; Mathieu Perret et al.
Source: check_circle
Crossref

The origin and evolution of open habitats in North America inferred by Bayesian deep learning models

Nature Communications
2022-08-17 | Journal article
DOI: 10.1038/s41467-022-32300-5
Contributors: Tobias Andermann; Caroline A. E. Strömberg; Alexandre Antonelli; Daniele Silvestro
Source: check_circle
Crossref
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IUCNN – Deep learning approaches to approximate species' extinction risk

Diversity and Distributions
2022-02 | Journal article
DOI: 10.1111/ddi.13450
Contributors: Alexander Zizka; Tobias Andermann; Daniele Silvestro; Cesar Capinha
Source: check_circle
Crossref
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Estimating alpha, beta, and gamma diversity through deep learning

2022-01-12 | Preprint
DOI: 10.1101/2022.01.12.475997
Contributors: Tobias Andermann; Alexandre Antonelli; Russell L. Barrett; Daniele Silvestro
Source: check_circle
Crossref

A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics

Molecular Ecology
2021 | Journal article
DOI: 10.1111/mec.16240
EID:

2-s2.0-85118255763

Part of ISSN: 1365294X 09621083
Contributors: G. Ribeiro, P.; Torres Jiménez, M.F.; Andermann, T.; Antonelli, A.; Bacon, C.D.; Matos-Maraví, P.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
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Genomic and niche divergence in an Amazonian palm species complex

Botanical Journal of the Linnean Society
2021 | Journal article
DOI: 10.1093/botlinnean/boab012
EID:

2-s2.0-85118831158

Part of ISSN: 10958339 00244074
Contributors: Bacon, C.D.; Roncal, J.; Andermann, T.; Barnes, C.J.; Balslev, H.; Gutiérrez-Pinto, N.; Morales, H.; Núñez-Avelleneda, L.A.; Tunarosa, N.; Antonelli, A.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
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The evolution of open habitats in North America revealed by deep learning models

2021-09-05 | Other
DOI: 10.1101/2021.09.03.458822
Contributors: Tobias Andermann; Caroline Strömberg; Alexandre Antonelli; Daniele Silvestro
Source: check_circle
Crossref
grade
Preferred source (of 3)‎

IUCNN - deep learning approaches to approximate species’ extinction risk

2021-06-18 | Other
DOI: 10.1101/2021.06.17.448832
Contributors: Alexander Zizka; Tobias Andermann; Daniele Silvestro
Source: check_circle
Crossref
grade
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iucn_sim: a new program to simulate future extinctions based on IUCN threat status

Ecography
2021-02 | Journal article
DOI: 10.1111/ecog.05110
Contributors: Tobias Andermann; Søren Faurby; Robert Cooke; Daniele Silvestro; Alexandre Antonelli
Source: check_circle
Crossref
grade
Preferred source (of 4)‎

Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa

TAXON
2021-02 | Journal article
DOI: 10.1002/tax.12421
Contributors: Julio V. Schneider; Tanja Jungcurt; Domingos Cardoso; André Márcio Amorim; Mats Töpel; Tobias Andermann; Odile Poncy; Thomas Berberich; Georg Zizka
Source: check_circle
Crossref
grade
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A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project

Frontiers in Genetics
2020 | Journal article
DOI: 10.3389/fgene.2019.01407
EID:

2-s2.0-85081676191

Part of ISSN: 16648021
Contributors: Andermann, T.; Torres Jiménez, M.F.; Matos-Maraví, P.; Batista, R.; Blanco-Pastor, J.L.; Gustafsson, A.L.S.; Kistler, L.; Liberal, I.M.; Oxelman, B.; Bacon, C.D. et al.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
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Prior choice affects ability of Bayesian neural networks to identify unknowns

arXiv
2020 | Other
EID:

2-s2.0-85094036161

Part of ISSN: 23318422
Contributors: Silvestro, D.; Andermann, T.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
Preferred source (of 2)‎

The past and future human impact on mammalian diversity

Science Advances
2020-09-04 | Journal article
DOI: 10.1126/sciadv.abb2313
Contributors: Tobias Andermann; Søren Faurby; Samuel T. Turvey; Alexandre Antonelli; Daniele Silvestro
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Crossref
grade
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Phylogenomics and biogeography of the world's thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history

Proceedings of the Royal Society B: Biological Sciences
2020-01-29 | Journal article
DOI: 10.1098/rspb.2019.2400
Contributors: Romina Batista; Urban Olsson; Tobias Andermann; Alexandre Aleixo; Camila Cherem Ribas; Alexandre Antonelli
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Crossref
grade
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Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

Systematic Biology
2019 | Journal article
DOI: 10.1093/sysbio/syy039
EID:

2-s2.0-85049994761

Part of ISSN: 1076836X 10635157
Contributors: Andermann, T.; Fernandes, A.M.; Olsson, U.; Töpel, M.; Pfeil, B.; Oxelman, B.; Aleixo, A.; Faircloth, B.C.; Antonelli, A.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
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CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases

Methods in Ecology and Evolution
2019 | Journal article
DOI: 10.1111/2041-210X.13152
EID:

2-s2.0-85062375357

Part of ISSN: 2041210X
Contributors: Zizka, A.; Silvestro, D.; Andermann, T.; Azevedo, J.; Duarte Ritter, C.; Edler, D.; Farooq, H.; Herdean, A.; Ariza, M.; Scharn, R. et al.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
Preferred source (of 3)‎

iucn_sim: A new program to simulate future extinctions based on IUCN threat status

2019-12-18 | Preprint
DOI: 10.1101/2019.12.16.878249
Contributors: Tobias Andermann; Søren Faurby; Robert Cooke; Daniele Silvestro; Alexandre Antonelli
Source: check_circle
Crossref
grade
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A guide to carrying out a phylogenomic target sequence capture project

2019-09-18 | Other
DOI: 10.7287/peerj.preprints.27968
Contributors: Tobias Andermann; Maria Fernanda Torres Jimenez; Pável Matos-Maraví; Romina Batista; José L Blanco-Pastor; A. Lovisa S Gustafsson; Logan Kistler; Isabel M Liberal; Bengt Oxelman; Christine D Bacon et al.
Source: check_circle
Crossref

A guide to carrying out a phylogenomic target sequence capture project

2019-09-18 | Other
DOI: 10.7287/peerj.preprints.27968v1
Contributors: Tobias Andermann; Maria Fernanda Torres Jimenez; Pável Matos-Maraví; Romina Batista; José L Blanco-Pastor; A. Lovisa S Gustafsson; Logan Kistler; Isabel M Liberal; Bengt Oxelman; Christine D Bacon et al.
Source: check_circle
Crossref

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

bioRxiv
2018 | Other
DOI: 10.1101/255752
EID:

2-s2.0-85095643241

Part of ISSN: 26928205
Contributors: Andermann, T.; Fernandes, A.M.; Olsson, U.; Töpel, M.; Pfeil, B.; Oxelman, B.; Aleixo, A.; Faircloth, B.C.; Antonelli, A.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
Preferred source (of 2)‎

Estimating age-dependent extinction: Contrasting evidence from fossils and phylogenies daniele.silvestro@bioenv.gu.se

Systematic Biology
2018 | Journal article
DOI: 10.1093/sysbio/syx082
EID:

2-s2.0-85043490262

Part of ISSN: 1076836X 10635157
Contributors: Hagen, O.; Andermann, T.; Quental, T.B.; Antonelli, A.; Silvestro, D.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
Preferred source (of 3)‎

SECAPR-A bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments

PeerJ
2018 | Journal article
DOI: 10.7717/peerj.5175
EID:

2-s2.0-85049995218

Part of ISSN: 21678359
Contributors: Andermann, T.; Cano, Á.; Zizka, A.; Bacon, C.; Antonelli, A.
Source: Self-asserted source
Tobias Andermann via Scopus - Elsevier
grade
Preferred source (of 3)‎

Conceptual and empirical advances in Neotropical biodiversity research

PeerJ
2018-10-04 | Journal article
DOI: 10.7717/peerj.5644
Contributors: Alexandre Antonelli; María Ariza; James Albert; Tobias Andermann; Josué Azevedo; Christine Bacon; Søren Faurby; Thais Guedes; Carina Hoorn; Lúcia G. Lohmann et al.
Source: check_circle
Crossref
grade
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SECAPR - A bioinformatics pipeline for the rapid and user-friendly processing of Illumina sequences, from raw reads to alignments

2018-02-13 | Other
DOI: 10.7287/peerj.preprints.26477
Contributors: Tobias Andermann; Angela Cano; Alexander Zizka; Christine Bacon; Alexandre Antonelli
Source: check_circle
Crossref

SECAPR - A bioinformatics pipeline for the rapid and user-friendly processing of Illumina sequences, from raw reads to alignments

2018-02-13 | Other
DOI: 10.7287/peerj.preprints.26477v3
Contributors: Tobias Andermann; Angela Cano; Alexander Zizka; Christine Bacon; Alexandre Antonelli
Source: check_circle
Crossref

SECAPR - A bioinformatics pipeline for the rapid and user-friendly alignment of hybrid enrichment sequences, from raw reads to alignments

2018-02-02 | Other
DOI: 10.7287/peerj.preprints.26477v2
Contributors: Tobias Andermann; Angela Cano; Alexander Zizka; Christine Bacon; Alexandre Antonelli
Source: check_circle
Crossref

SECAPR - A bioinformatics pipeline for the rapid and user-friendly alignment of hybrid enrichment sequences, from raw reads to alignments

2018-02-01 | Other
DOI: 10.7287/peerj.preprints.26477v1
Contributors: Tobias Andermann; Angela Cano; Alexander Zizka; Christine Bacon; Alexandre Antonelli
Source: check_circle
Crossref

An introduction to plant phylogenomics with a focus on palms

Botanical Journal of the Linnean Society
2016 | Journal article
DOI: 10.1111/BOJ.12399
WOSUID: WOS:000385748500005
Contributors: Barrett, Craig F.; Bacon, Christine D.; Antonelli, Alexandre; Cano, Angela; Hofmann, Tobias
Source: check_circle
Web of Science Researcher Profile Sync

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard - a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

MycoKeys
2016 | Journal article
DOI: 10.3897/MYCOKEYS.16.10000
WOSUID: WOS:000387016900001
Contributors: Abarenkov, Kessy; Adams, Rachel I.; Irinyi, Laszlo; Agan, Ahto; Ambrosio, Elia; Antonelli, Alexandre; Bahram, Mohammad; Bengtsson-Palme, Johan; Bok, Gunilla; Cangren, Patrik et al.
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Web of Science Researcher Profile Sync

Peer review (24 reviews for 15 publications/grants)

Review activity for Annals of botany. (1)
Review activity for Conservation science and practice. (2)
Review activity for Ecological informatics. (2)
Review activity for Ecological informatics. (1)
Review activity for Ecology and evolution. (2)
Review activity for Ecology letters. (1)
Review activity for Frontiers in plant science. (1)
Review activity for Global ecology & biogeography. (3)
Review activity for Journal of biogeography. (1)
Review activity for Methods in ecology and evolution. (1)
Review activity for Molecular ecology resources. (2)
Review activity for Nature communications (2)
Review activity for Reviews in fish biology and fisheries. (1)
Review activity for Reviews in fish biology and fisheries. (1)
Review activity for Systematic biology. (3)
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