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Works (29)

Host-dependent specialized metabolism of nitrogen export in actinorhizal nodules induced by diazotrophic Actinomycetota Frankia cluster-2

Journal of Experimental Botany
2025-02-25 | Journal article
DOI: 10.1093/jxb/erae446
Contributors: Fede Berckx; Thanh Van Nguyen; Rolf Hilker; Daniel Wibberg; Kai Battenberg; Jörn Kalinowski; Alison Berry; Katharina Pawlowski; Oswaldo Valdéz López
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Exploration of In Situ Extraction for Enhanced Triterpenoid Production by Saccharomyces cerevisiae

Microbial Biotechnology
2024-12 | Journal article
DOI: 10.1111/1751-7915.70061
Contributors: Mariam Dianat; Sarah Straaten; Aldo Maritato; Daniel Wibberg; Tobias Busche; Lars M. Blank; Birgitta E. Ebert
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A research data management (RDM) community for ELIXIR [version 2; peer review: 2 approved]

2024-09-30 | Journal article
DOI: 10.12688/f1000research.146301.2
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER:

802750

Funded by GRANT_NUMBER:

871075
Contributors: Flora D'Anna; Niclas Jareborg; Mijke Jetten; Minna Ahokas; Pinar Alper; Robert Andrews; Korbinian Bösl; Teresa D’Altri; Daniel Faria; Nazeefa Fatima et al.
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Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesised proteins

2024-08-27 | Preprint
DOI: 10.1101/2024.08.27.609880
Contributors: Patrick Hellwig; Daniel Kautzner; Robert Heyer; Anna Dittrich; Daniel Wibberg; Tobias Busche; Anika Winkler; Udo Reichl; Dirk Benndorf
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Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere

FEMS Microbiology Ecology
2024-04-10 | Journal article
DOI: 10.1093/femsec/fiae042
Contributors: Fede Berckx; Daniel Wibberg; Andreas Brachmann; Ciara Morrison; Nadia B Obaid; Jochen Blom; Jörn Kalinowski; Luis G Wall; Katharina Pawlowski
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Pseudomonas kulmbachensis sp. nov. and Pseudomonas paraveronii sp. nov., originating from chilled beef and chicken breast

International Journal of Systematic and Evolutionary Microbiology
2024-04-08 | Journal article
DOI: 10.1099/ijsem.0.006293
Contributors: Sonja Lick; Daniel Wibberg; Tobias Busche; Jochen Blom; Christina Grimmler; Alexander Goesmann; Jörn Kalinowski
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Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins

ISME Communications
2024-01-08 | Journal article
DOI: 10.1093/ismeco/ycae153
Contributors: Patrick Hellwig; Daniel Kautzner; Robert Heyer; Anna Dittrich; Daniel Wibberg; Tobias Busche; Anika Winkler; Udo Reichl; Dirk Benndorf
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Kitasatospora fiedleri sp. nov., a novel antibiotic-producing member of the genus Kitasatospora

International Journal of Systematic and Evolutionary Microbiology
2023-11-02 | Journal article
DOI: 10.1099/ijsem.0.006137
Contributors: Alina Zimmermann; Imen Nouioui; Gabriele Pötter; Meina Neumann-Schaal; Jacqueline Wolf; Daniel Wibberg; Yvonne Mast
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Streptomyces coriariae sp. nov., a novel streptomycete isolated from actinorhizal nodules of Coriaria intermedia

International Journal of Systematic and Evolutionary Microbiology
2023-04-27 | Journal article
DOI: 10.1099/ijsem.0.005603
Contributors: Fede Berckx; Cyndi Mae Bandong; Daniel Wibberg; Jörn Kalinowski; Joost Willemse; Andreas Brachmann; Jessica Simbahan; Katharina Pawlowski
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Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602

Journal of Fungi
2022-08-16 | Journal article
DOI: 10.3390/jof8080862
Contributors: Thomas Schafhauser; Daniel Wibberg; Antonia Binder; Christian Rückert; Tobias Busche; Wolfgang Wohlleben; Jörn Kalinowski
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Ustilago maydis Metabolic Characterization and Growth Quantification with a Genome-Scale Metabolic Model

Journal of Fungi
2022-05-20 | Journal article
DOI: 10.3390/jof8050524
Contributors: Ulf W. Liebal; Lena Ullmann; Christian Lieven; Philipp Kohl; Daniel Wibberg; Thiemo Zambanini; Lars M. Blank
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Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis

Journal of Fungi
2022-03-08 | Journal article
DOI: 10.3390/jof8030269
Contributors: Lena Ullmann; Daniel Wibberg; Tobias Busche; Christian Rückert; Andreas Müsgens; Jörn Kalinowski; Lars M. Blank
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A Genome-Scale Metabolic Model for the Smut-Fungus Ustilago maydis

2022-03-04 | Preprint
DOI: 10.1101/2022.03.03.482780
Contributors: Ulf W. Liebal; Lena Ullmann; Christian Lieven; Philipp Kohl; Daniel Wibberg; Thiemo Zambanini; Lars M. Blank
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Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing

Microorganisms
2022-02-04 | Journal article
DOI: 10.3390/microorganisms10020368
Contributors: Katharina Willenbücher; Daniel Wibberg; Liren Huang; Marius Conrady; Patrice Ramm; Julia Gätcke; Tobias Busche; Christian Brandt; Ulrich Szewzyk; Andreas Schlüter et al.
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Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14

Journal of Fungi
2021-10-05 | Journal article
DOI: 10.3390/jof7100832
Contributors: Daniel Wibberg; Franziska Genzel; Bart Verwaaijen; Jochen Blom; Oliver Rupp; Alexander Goesmann; Rita Zrenner; Rita Grosch; Alfred Pühler; Andreas Schlüter
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Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef

International Journal of Systematic and Evolutionary Microbiology
2021-06-07 | Journal article
DOI: 10.1099/ijsem.0.004822
Contributors: Sonja Lick; Daniel Wibberg; Annika Winkler; Jochen Blom; Christina Grimmler; Alexander Goesmann; Jörn Kalinowski; Lothar Kröckel
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Pseudomonas paracarnis sp. nov., isolated from refrigerated beef

International Journal of Systematic and Evolutionary Microbiology
2021-02-01 | Journal article
DOI: 10.1099/ijsem.0.004652
Contributors: Sonja Lick; Daniel Wibberg; Annika Winkler; Jochen Blom; Christina Grimmler; Alexander Goesmann; Jörn Kalinowski; Lothar Kröckel
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High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa

Fungal Diversity
2021-01-25 | Journal article
DOI: 10.1007/s13225-020-00447-5
Contributors: Daniel Wibberg; Marc Stadler; Christopher Lambert; Boyke Bunk; Cathrin Spröer; Christian Rückert; Jörn Kalinowski; Russell J. Cox; Eric Kuhnert
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The sporothriolides. A new biosynthetic family of fungal secondary metabolites

Chemical Science
2020 | Journal article
DOI: 10.1039/D0SC04886K
Contributors: Dong-Song Tian; Eric Kuhnert; Jamal Ouazzani; Daniel Wibberg; Jörn Kalinowski; Russell J. Cox
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Synthetic Biology Driven Biosynthesis of Unnatural Tropolone Sesquiterpenoids

Angewandte Chemie International Edition
2020-12-21 | Journal article
DOI: 10.1002/anie.202009914
Contributors: Carsten Schotte; Lei Li; Daniel Wibberg; Jörn Kalinowski; Russell J. Cox
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Synthetisch biologisch getriebene Biosynthese von unnatürlichen Tropolon‐Sesquiterpenoiden

Angewandte Chemie
2020-12-21 | Journal article
DOI: 10.1002/ange.202009914
Contributors: Carsten Schotte; Lei Li; Daniel Wibberg; Jörn Kalinowski; Russell J. Cox
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The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses

Microorganisms
2020-12-17 | Journal article
DOI: 10.3390/microorganisms8122024
Contributors: Irena Maus; Tom Tubbesing; Daniel Wibberg; Robert Heyer; Julia Hassa; Geizecler Tomazetto; Liren Huang; Boyke Bunk; Cathrin Spröer; Dirk Benndorf et al.
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Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta

Systematic and Applied Microbiology
2020-11 | Journal article
DOI: 10.1016/j.syapm.2020.126134
Contributors: Aude Herrera-Belaroussi; Philippe Normand; Katharina Pawlowski; Maria P. Fernandez; Daniel Wibberg; Jörn Kalinowski; Andreas Brachmann; Fede Berckx; Natuschka Lee; Jochen Blom et al.
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The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR [version 2; peer review: 2 approved]

2020-09-11 | Journal article
DOI: 10.12688/f1000research.20244.2
Part of ISSN: 2046-1402
Contributors: Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey et al.
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F1000
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Pseudomonas carnis sp. nov., isolated from meat

International Journal of Systematic and Evolutionary Microbiology
2020-03-01 | Journal article
DOI: 10.1099/ijsem.0.003928
Contributors: Sonja Lick; Lothar Kröckel; Daniel Wibberg; Annika Winkler; Jochen Blom; Annegret Bantleon; Alexander Goesmann; Jörn Kalinowski
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Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of <i>Beet necrotic yellow vein virus</i> and <i>Beet soil-borne mosaic virus</i> with Their Host Sugar Beet

Viruses
2020-01 | Journal article | Author
DOI: 10.3390/v12010076
Contributors: Jose Fernando Gil; Daniel Wibberg; Omid Eini; Eugene Savenkov; Mark Varrelmann; Sebastian Liebe
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Multidisciplinary Digital Publishing Institute
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Pseudomonas bubulae sp. nov., isolated from beef

International Journal of Systematic and Evolutionary Microbiology
2020-01-01 | Journal article
DOI: 10.1099/ijsem.0.003751
Contributors: Sonja Lick; Lothar Kröckel; Daniel Wibberg; Annika Winkler; Jochen Blom; Alexander Goesmann; Jörn Kalinowski
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Genome Analyses and Genome-Centered Metatranscriptomics of <i>Methanothermobacter wolfeii</i> Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter

Microorganisms
2019-12 | Journal article | Author
DOI: 10.3390/microorganisms8010013
Contributors: Julia Hassa; Daniel Wibberg; Irena Maus; Alfred Pühler; Andreas Schlüter
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Multidisciplinary Digital Publishing Institute
grade
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The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

F1000Research
2019-11-07 | Journal article
DOI: 10.12688/f1000research.20244.1
Contributors: Daniel Wibberg; Bérénice Batut; Peter Belmann; Jochen Blom; Frank Oliver Glöckner; Björn Grüning; Nils Hoffmann; Nils Kleinbölting; René Rahn; Maja Rey et al.
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