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ResearcherID: G-1776-2016

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Universidad Carlos III de Madrid: Madrid, ES

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Universidad Carlos III de Madrid

Works (50 of 177)

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Page 1 of 4

Non-linear and time-domain sleep qEEG features predict CSF protein damage markers in early Alzheimer’s disease

2025-03-31 | Preprint
DOI: 10.1101/2025.03.28.645905
Contributors: Anna Michela Gaeta; Lorena Gallego Viñarás; Ferran Barbé; Pablo M. Olmos; Reinald Pamplona; Farida Dakterzada; Arrate Muñoz-Barrutia; Gerard Piñol-Ripoll
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Unraveling the power of NAP-CNB’s machine learning-enhanced tumor neoantigen prediction

eLife
2025-03-11 | Journal article
DOI: 10.7554/eLife.95010
Contributors: Almudena Mendez-Perez; Andres M Acosta-Moreno; Carlos Wert-Carvajal; Pilar Ballesteros-Cuartero; Ruben Sánchez-García; Jose R Macias; Rebeca Sanz-Pamplona; Ramon Alemany; Carlos Oscar Sorzano; Arrate Munoz-Barrutia et al.
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Unraveling the power of NAP-CNB’s machine learning-enhanced tumor neoantigen prediction

eLife
2025-03-11 | Journal article
DOI: 10.7554/eLife.95010.3
Contributors: Almudena Mendez-Perez; Andres M Acosta-Moreno; Carlos Wert-Carvajal; Pilar Ballesteros-Cuartero; Ruben Sánchez-García; Jose R Macias; Rebeca Sanz-Pamplona; Ramon Alemany; Carlos Oscar Sorzano; Arrate Munoz-Barrutia et al.
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Alzheimer's Disease Detection in EEG Sleep Signals

IEEE Journal of Biomedical and Health Informatics
2025-02 | Journal article
DOI: 10.1109/JBHI.2024.3478380
Contributors: Lorena Gallego-Viñarás; Juan Miguel Mira-Tomás; Anna Michela Gaeta; Gerard Pinol-Ripoll; Ferran Barbé; Pablo M. Olmos; Arrate Muñoz-Barrutia
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Unraveling the Power of NAP-CNB’s Machine Learning-enhanced Tumor Neoantigen Prediction

2025-02-12 | Preprint
DOI: 10.7554/eLife.95010.2
Contributors: Almudena Méndez-Pérez; Andrés M Acosta-Moreno; Carlos Wert-Carvajal; Pilar Ballesteros-Cuartero; Rubén Sánchez-García; José R Macías; Rebeca Sanz-Pamplona; Ramon Alemany; Carlos Óscar S Sorzano; Arrate Muñoz-Barrutia et al.
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Bridging the gap: Integrating cutting-edge techniques into biological imaging with deepImageJ

Biological Imaging
2024 | Journal article
DOI: 10.1017/S2633903X24000114
Contributors: Caterina Fuster-Barceló; Carlos García-López-de-Haro; Estibaliz Gómez-de-Mariscal; Wei Ouyang; Jean-Christophe Olivo-Marin; Daniel Sage; Arrate Muñoz-Barrutia
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Multiscale and multimodal evaluation of autosomal dominant polycystic kidney disease development

Communications Biology
2024-09-19 | Journal article
DOI: 10.1038/s42003-024-06868-1
Contributors: Pablo Delgado-Rodriguez; Nicolás Lamanna-Rama; Cassondra Saande; Rafael Aldabe; María L. Soto-Montenegro; Arrate Munoz-Barrutia
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SAM-based Automatic Workflow for Histology Cyst Segmentation in Autosomal Dominant Polycystic Kidney Disease

2024-09-03 | Preprint
DOI: 10.1101/2024.09.02.610807
Contributors: Pablo Delgado-Rodriguez; Roman Kinakh; Rafael Aldabe; Arrate Munoz-Barrutia
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BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging

Nature Methods
2024-08 | Journal article
DOI: 10.1038/s41592-024-02370-y
Contributors: Wanlu Lei; Caterina Fuster-Barceló; Gabriel Reder; Arrate Muñoz-Barrutia; Wei Ouyang
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Unraveling the Power of NAP-CNB’s Machine Learning-enhanced Tumor Neoantigen Prediction

2024-06-05 | Preprint
DOI: 10.7554/eLife.95010.1
Contributors: Almudena Méndez-Pérez; Andrés M. Acosta-Moreno; Carlos Wert-Carvajal; Pilar Ballesteros-Cuartero; Rubén Sánchez-García; José R Macías; Rebeca Sanz-Pamplona; Ramon Alemany; Carlos Óscar S. Sorzano; Arrate Muñoz-Barrutia et al.
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Crossref

MLL1 regulates cytokine-driven cell migration and metastasis

Science Advances
2024-03-15 | Journal article
DOI: 10.1126/sciadv.adk0785
Contributors: Praful R. Nair; Ludmila Danilova; Estibaliz Gómez-de-Mariscal; Dongjoo Kim; Rong Fan; Arrate Muñoz-Barrutia; Elana J. Fertig; Denis Wirtz
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Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping

2024-03-10 | Preprint
DOI: 10.1101/2024.03.07.583909
Contributors: Saurabh Joshi; André Forjaz; Kyu Sang Han; Yu Shen; Vasco Queiroga; Daniel Xenes; Jordan Matelsk; Brock Wester; Arrate Munoz Barrutia; Ashley L. Kiemen et al.
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Tumor proliferation and invasion are intrinsically coupled and unraveled through tunable spheroid and physics-based models

Acta Biomaterialia
2024-02 | Journal article
DOI: 10.1016/j.actbio.2023.12.043
Contributors: Ashleigh J. Crawford; Clara Gomez-Cruz; Gabriella C. Russo; Wilson Huang; Isha Bhorkar; Triya Roy; Arrate Muñoz-Barrutia; Denis Wirtz; Daniel Garcia-Gonzalez
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JDLL: a library to run deep learning models on Java bioimage informatics platforms

Nature Methods
2024-01 | Journal article
DOI: 10.1038/s41592-023-02129-x
Contributors: Carlos García López de Haro; Stéphane Dallongeville; Thomas Musset; Estibaliz Gómez-de-Mariscal; Daniel Sage; Wei Ouyang; Arrate Muñoz-Barrutia; Jean-Yves Tinevez; Jean-Christophe Olivo-Marin
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Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ

2024-01-15 | Preprint
DOI: 10.1101/2024.01.12.575015
Contributors: Caterina Fuster-Barceló; Carlos García López de Haro; Estibaliz Gómez-de-Mariscal; Wei Ouyang; Jean-Christophe Olivo-Marin; Daniel Sage; Arrate Muñoz-Barrutia
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Unraveling the Power of NAP-CNB’s Machine Learning-enhanced Tumor Neoantigen Prediction

2023-11-22 | Preprint
DOI: 10.1101/2023.11.22.568042
Contributors: Almudena Méndez-Pérez; Andrés M. Acosta-Moreno; Carlos Wert-Carvajal; Pilar Ballesteros-Cuartero; Rubén Sánchez-García; José R Macías; Rebeca Sanz-Pamplona; Ramon Alemany; Carlos Óscar S. Sorzano; Arrate Muñoz-Barrutia et al.
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From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee

IEEE Signal Processing Magazine
2023-06 | Journal article
DOI: 10.1109/MSP.2023.3242833
Contributors: Selin Aviyente; Alejandro F. Frangi; Erik Meijering; Arrate Muñoz-Barrutia; Michael Liebling; Dimitri Van De Ville; Jean-Christophe Olivo-Marin; Jelena Kovačević; Michael Unser
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Automatic Classification of Normal and Abnormal Cell Division Using Deep Learning Analysis of Mitosis Videos

2023-05-01 | Preprint
DOI: 10.1101/2023.04.27.538650
Contributors: Pablo Delgado-Rodriguez; Rodrigo Morales Sánchez; Elouan Rouméas-Noël; François Paris; Arrate Munoz-Barrutia
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ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis

Sensors
2023-03-22 | Journal article
DOI: 10.3390/s23063338
Contributors: Laura Nicolás-Sáenz; Agapito Ledezma; Javier Pascau; Arrate Muñoz-Barrutia
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The contribution of microfluidics to the fight against tuberculosis

Nanotechnology Reviews
2022 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Single Plane Illumination Microscopy for Microfluidic Device Imaging

Biosensors
2022-12-01 | Journal article
DOI: 10.3390/bios12121110
Contributors: Clara Gomez-Cruz; Sonia Laguna; Ariadna Bachiller-Pulido; Cristina Quilez; Marina Cañadas-Ortega; Ignacio Albert-Smet; Jorge Ripoll; Arrate Muñoz-Barrutia
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Tumor proliferation and invasion are coupled through cell-extracellular matrix friction

2022-11-15 | Preprint
DOI: 10.1101/2022.11.15.516548
Contributors: Ashleigh J. Crawford; Clara Gomez-Cruz; Gabriella C. Russo; Wilson Huang; Isha Bhorkar; Arrate Muñoz-Barrutia; Denis Wirtz; Daniel Garcia-Gonzalez
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Crossref

MLL1 regulates cytokine-driven cell migration and metastasis

2022-10-19 | Preprint
DOI: 10.1101/2022.10.18.512715
Contributors: Praful R. Nair; Ludmila Danilova; Estibaliz Gómez-de-Mariscal; Dongjoo Kim; Rong Fan; Arrate Muñoz-Barrutia; Elana J. Fertig; Denis Wirtz
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Deep learning based domain adaptation for mitochondria segmentation on EM volumes

Computer Methods and Programs in Biomedicine
2022-07 | Journal article
DOI: 10.1016/j.cmpb.2022.106949
Part of ISSN: 0169-2607
Contributors: Daniel Franco-Barranco; Julio Pastor-Tronch; Aitor González-Marfil; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras
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Arrate Muñoz-Barrutia

Magneto-mechanical system to reproduce and quantify complex strain patterns in biological materials

Applied Materials Today
2022-06 | Journal article
DOI: 10.1016/j.apmt.2022.101437
Contributors: Miguel Angel Moreno-Mateos; Jorge Gonzalez-Rico; Emanuel Nunez-Sardinha; Clara Gomez-Cruz; Maria Luisa Lopez-Donaire; Sergio Lucarini; Angel Arias; Arrate Muñoz-Barrutia; Diego Velasco; Daniel Garcia-Gonzalez
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Crossref

Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes

Neuroinformatics
2022-04 | Journal article
DOI: 10.1007/s12021-021-09556-1
Contributors: Daniel Franco-Barranco; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras
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Reduction of motion effects in myocardial arterial spin labeling

Magnetic Resonance in Medicine
2022-03 | Journal article
DOI: 10.1002/mrm.29038
Contributors: Verónica Aramendía‐Vidaurreta; Pedro M. Gordaliza; Marta Vidorreta; Rebeca Echeverría‐Chasco; Gorka Bastarrika; Arrate Muñoz‐Barrutia; María A. Fernández‐Seara
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Automatic determination of the handedness of Single-Particle maps of macromolecules solved by CryoEM

2022-03-04 | Preprint
DOI: 10.1101/2022.03.01.482513
Contributors: J. Garcia Condado; A. Muñoz-Barrutia; C.O.S. Sorzano
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DeepImageJ: A user-friendly environment to run deep learning models in ImageJ

Nature Methods
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

DeepImageJ: A user-friendly environment to run deep learning models in ImageJ

bioRxiv
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

DeepImageJ: Deep learning in bioimage analysis for dummies

2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Delta-Radiomics Signature For Prediction Of Survival In Advanced Nsclc Patients Treated With Immunotherapy

2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)
2021 | Conference paper
Source: Self-asserted source
Arrate Muñoz-Barrutia

Emerging technologies and outlook

Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2
2021 | Book chapter
Source: Self-asserted source
Arrate Muñoz-Barrutia

Innovations in ex vivo Light Sheet Fluorescence Microscopy

Progress in Biophysics and Molecular Biology
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Molecular imaging of pulmonary tuberculosis in an ex-vivo mouse model using spectral photon-counting computed tomography and micro-CT

IEEE Access
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Molecular Imaging of Pulmonary Tuberculosis in an Ex-Vivo Mouse Model Using Spectral Photon-Counting Computed Tomography and Micro-CT

IEEE Access
2021 | Journal article
DOI: 10.1109/ACCESS.2021.3076432
Contributors: Chiara Lowe; Ana Ortega-Gil; Mahdieh Moghiseh; Nigel G. Anderson; Arrate Munoz-Barrutia; Juan Jose Vaquero; Aamir Y. Raja; Aysouda Matanaghi; Alexander I. Chernoglazov; Theodorus Dapamede et al.
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MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy

F1000Research
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

NAP-CNB: Bioinformatic Pipeline to Predict MHC-I-Restricted T Cell Epitopes in Mice

2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Predicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool

Scientific Reports
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Reduction of motion effects in myocardial arterial spin labeling

Magnetic resonance in medicine
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Search for temporal cell segmentation robustness in phase-contrast microscopy videos

arXiv preprint arXiv:2112.08817
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Stable deep neural network architectures for mitochondria segmentation on electron microscopy volumes

arXiv preprint arXiv:2104.03577
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Tuning the Cell and Biological Tissue Environment through Magneto-Active Materials

Applied Sciences
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Use of the p-value as a size-dependent function to address practical differences when analyzing large datasets

bioRxiv
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets

Scientific Reports
2021 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

DeepImageJ: A user-friendly environment to run deep learning models in ImageJ

Nature Methods
2021-10-30 | Journal article
DOI: 10.1038/s41592-021-01262-9
Contributors: Estibaliz Gómez-de-Mariscal; Carlos García-López-de-Haro; Wei Ouyang; Laurène Donati; Emma Lundberg; Michael Unser; Arrate Muñoz-Barrutia; Daniel Sage
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Crossref

Tuning the Cell and Biological Tissue Environment through Magneto-Active Materials

Applied Sciences
2021-09-19 | Journal article
DOI: 10.3390/app11188746
Contributors: Jorge Gonzalez-Rico; Emanuel Nunez-Sardinha; Leticia Valencia; Angel Arias; Arrate Muñoz-Barrutia; Diego Velasco; Daniel Garcia-Gonzalez
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Crossref
grade
Preferred source (of 2)‎

A radiological score for the assessment of tuberculosis progression: Validation in mouse models

Tuberculosis
2020 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

ANHIR: automatic non-rigid histological image registration challenge

IEEE transactions on medical imaging
2020 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia

Association of visual and quantitative heterogeneity of 18F-FDG PET images with treatment response in locally advanced rectal cancer: A feasibility study

PloS one
2020 | Journal article
Source: Self-asserted source
Arrate Muñoz-Barrutia
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