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Works (20)

R2DT: a comprehensive platform for visualizing RNA secondary structure

Nucleic Acids Research
2025-02-08 | Journal article
DOI: 10.1093/nar/gkaf032
Contributors: Holly McCann; Caeden D Meade; Loren Dean Williams; Anton S Petrov; Philip Z Johnson; Anne E Simon; David Hoksza; Eric P Nawrocki; Patricia P Chan; Todd M Lowe et al.
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Crossref

Expansion of the tmRNA sequence database and new tools for search and visualization

NAR Genomics and Bioinformatics
2025-01-07 | Journal article
DOI: 10.1093/nargab/lqaf019
Contributors: Eric P Nawrocki; Anton I Petrov; Kelly P Williams
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Crossref

Rfam 15: RNA families database in 2025

Nucleic Acids Research
2025-01-06 | Journal article
DOI: 10.1093/nar/gkae1023
Contributors: Nancy Ontiveros-Palacios; Emma Cooke; Eric P Nawrocki; Sandra Triebel; Manja Marz; Elena Rivas; Sam Griffiths-Jones; Anton I Petrov; Alex Bateman; Blake Sweeney
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Crossref

R2DT: a comprehensive platform for visualising RNA secondary structure

2024-09-30 | Preprint
DOI: 10.1101/2024.09.29.611006
Contributors: Holly McCann; Caeden D. Meade; Loren Dean Williams; Anton S. Petrov; Philip Z. Johnson; Anne E. Simon; David Hoksza; Eric P. Nawrocki; Patricia P. Chan; Todd M. Lowe et al.
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Crossref

Rfam 15: RNA families database in 2025

2024-09-24 | Preprint
DOI: 10.1101/2024.09.23.614430
Contributors: Nancy Ontiveros; Emma Cooke; Eric P. Nawrocki; Sandra Triebel; Manja Marz; Elena Rivas; Sam Griffiths-Jones; Anton I. Petrov; Alex Bateman; Blake Sweeney
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Crossref

Influenza sequence validation and annotation using VADR

Database
2024-09-19 | Journal article
DOI: 10.1093/database/baae091
Contributors: Vincent C Calhoun; Eneida L Hatcher; Linda Yankie; Eric P Nawrocki
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Crossref

Influenza sequence validation and annotation using VADR

2024-03-25 | Preprint
DOI: 10.1101/2024.03.21.585980
Contributors: Vincent C Calhoun; Eneida L Hatcher; Linda Yankie; Eric P Nawrocki
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Crossref

Faster SARS-CoV-2 sequence validation and annotation for GenBank using VADR

NAR Genomics and Bioinformatics
2023-01-10 | Journal article
DOI: 10.1093/nargab/lqad002
Contributors: Eric P Nawrocki
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Crossref

Faster SARS-CoV-2 sequence validation and annotation for GenBank using VADR

2022-04-27 | Preprint
DOI: 10.1101/2022.04.25.489427
Contributors: Eric P Nawrocki
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Crossref

Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.

Database : the journal of biological databases and curation
2022-03-01 | Journal article
DOI: 10.1093/database/baac006
PMID: 35230423
Source: Self-asserted source
Eric P. Nawrocki

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

BMC Bioinformatics
2021-12 | Journal article
DOI: 10.1186/s12859-021-04316-z
Contributors: Alejandro A. Schäffer; Richard McVeigh; Barbara Robbertse; Conrad L. Schoch; Anjanette Johnston; Beverly A. Underwood; Ilene Karsch-Mizrachi; Eric P. Nawrocki
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Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

2021-02-12 | Preprint
DOI: 10.1101/2021.02.11.430762
Contributors: Alejandro A. Schäffer; Richard McVeigh; Barbara Robbertse; Conrad L. Schoch; Anjanette Johnston; Beverly A. Underwood; Ilene Karsch-Mizrachi; Eric P. Nawrocki
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Crossref

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

Nucleic Acids Research
2021-01-08 | Journal article
DOI: 10.1093/nar/gkaa1047
Contributors: Ioanna Kalvari; Eric P Nawrocki; Nancy Ontiveros-Palacios; Joanna Argasinska; Kevin Lamkiewicz; Manja Marz; Sam Griffiths-Jones; Claire Toffano-Nioche; Daniel Gautheret; Zasha Weinberg et al.
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Crossref

VADR: validation and annotation of virus sequence submissions to GenBank

BMC Bioinformatics
2020-12 | Journal article
DOI: 10.1186/s12859-020-3537-3
Contributors: Alejandro A. Schäffer; Eneida L. Hatcher; Linda Yankie; Lara Shonkwiler; J. Rodney Brister; Ilene Karsch-Mizrachi; Eric P. Nawrocki
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Crossref

R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types

2020-09-11 | Preprint
DOI: 10.1101/2020.09.10.290924
Contributors: Blake A. Sweeney; David Hoksza; Eric P. Nawrocki; Carlos Eduardo Ribas; Fábio Madeira; Jamie J. Cannone; Robin Gutell; Aparna Maddala; Caeden Meade; Loren Dean Williams et al.
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Crossref

Group I introns are widespread in archaea

Nucleic Acids Research
2018-09-06 | Journal article
DOI: 10.1093/nar/gky414
Contributors: Eric P Nawrocki; Thomas A Jones; Sean R Eddy
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Crossref

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

Nucleic Acids Research
2018-01-04 | Journal article
DOI: 10.1093/nar/gkx1038
Contributors: Ioanna Kalvari; Joanna Argasinska; Natalia Quinones-Olvera; Eric P Nawrocki; Elena Rivas; Sean R Eddy; Alex Bateman; Robert D Finn; Anton I Petrov
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Crossref

Infernal 1.1: 100-fold faster RNA homology searches.

Bioinformatics (Oxford, England)
2013-09-04 | Journal article
DOI: 10.1093/bioinformatics/btt509
PMID: 24008419
PMC: PMC3810854
Contributors: Nawrocki EP; Sean Eddy
Source: Self-asserted source
Eric P. Nawrocki

Infernal 1.0: inference of RNA alignments.

Bioinformatics (Oxford, England)
2009-03-23 | Journal article
DOI: 10.1093/bioinformatics/btp157
PMID: 19307242
PMC: PMC2732312
Contributors: Nawrocki EP; Kolbe DL; Sean Eddy
Source: Self-asserted source
Eric P. Nawrocki

Query-dependent banding (QDB) for faster RNA similarity searches.

PLoS computational biology
2007-02-07 | Journal article
DOI: 10.1371/journal.pcbi.0030056
PMID: 17397253
PMC: PMC1847999
Contributors: Nawrocki EP; Sean Eddy
Source: Self-asserted source
Eric P. Nawrocki
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