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Sirarat Sarntivijai

Keywords

ontology, semantic integration, cell line ontology, ontology of adverse events, experimental factor ontology, bioinformatics, interoperability, FAIR data, data management

Countries

United Kingdom

Activities

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Employment (7)

Boehringer Ingelheim: Biberach an der Riss, DE

2022-05-01 to present | IT CompBio - Lead Business Consultant (IT Research, Development, and Medicine)
Employment
Source: Self-asserted source
Sirarat Sarntivijai

ELIXIR: Hinxton, Cambridge, GB

2018-03-01 to 2022-04-30 | ELIXIR Interoperability Platform Coordinator
Employment
Source: Self-asserted source
Sirarat Sarntivijai

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

2014-11 to 2017-02-28 | Bioinformatician (Samples, Phenotypes, and Ontologies)
Employment
Source: Self-asserted source
Sirarat Sarntivijai

US Food and Drug Administration: SILVER SPRING, Maryland, US

2012-05 to 2014-11 | ORISE Fellow - Medical Ontologist (Office of Clinical Pharmacology)
Employment
Source: Self-asserted source
Sirarat Sarntivijai

US Food and Drug Administration: SILVER SPRING, Maryland, US

2012 to 2014 | ORISE Fellow - Medical Informatics (Office of Translational Sciences)
Employment
Source: Self-asserted source
Sirarat Sarntivijai

CCM Airport Equipments: Suvarnabhumi Airport Project, Bangkok, TH

2003 to 2004 | QA/QC Manager
Employment
Source: Self-asserted source
Sirarat Sarntivijai

BEA Systems: Bangkok, TH

2002 to 2003 | Technical Documentation Specialist
Employment
Source: Self-asserted source
Sirarat Sarntivijai

Education and qualifications (2)

University of Michigan: Ann Arbor, Michigan, US

2007-09 to 2012-04 | Ph.D. (Bioinformatics)
Education
Source: Self-asserted source
Sirarat Sarntivijai

Mahidol University International College: Salaya, Nakhonpathom, TH

1998-09 to 2002-04 | B.Sc. (Computer Science)
Education
Source: Self-asserted source
Sirarat Sarntivijai

Works (25)

ELIXIR and Toxicology: a community in development [version 2; peer review: 2 approved]

2023-10-03 | Journal article
DOI: 10.12688/f1000research.74502.2
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER: 031L0107
Funded by GRANT_NUMBER: 212930/Z/18/Z,208381/A/17/Z
Funded by GRANT_NUMBER: 3718 674150
Funded by GRANT_NUMBER: 731075,681002,814572,825712,733032,953183, 814401,896141,965406,814425,825489
Funded by GRANT_NUMBER: 859891
Funded by GRANT_NUMBER: ANR-INBS-0010
Funded by GRANT_NUMBER:

CO19/00060

Funded by GRANT_NUMBER: IUT34-14
Funded by GRANT_NUMBER: LIFE17 ENV/SK/000355
Funded by GRANT_NUMBER: N2020-0005
Funded by GRANT_NUMBER: TK143
Contributors: Marvin Martens; Rob Stierum; Emma L. Schymanski; Chris T. Evelo; Reza Aalizadeh; Hristo Aladjov; Kasia Arturi; Karine Audouze; Pavel Babica; Karel Berka et al.
Source: check_circle
F1000

eTRANSAFE: Building a sustainable framework to share reproducible drug safety knowledge with the public domain

F1000Research
2022-03-07 | Journal article
DOI: 10.12688/f1000research.74024.1
Contributors: Sirarat Sarntivijai; Niklas Blomberg; Katharina B. Lauer; Katharine Briggs; Thomas Steger-Hartmann; Johan van der Lei; John-Michael Sauer; Richard Liwski; Miranda Mourby; Montse Camprubi
Source: check_circle
Crossref

Guidelines for FAIR sharing of preclinical safety and off-target pharmacology data

ALTEX
2021 | Journal article
DOI: 10.14573/altex.2011181
Part of ISSN: 1868-596X
Source: Self-asserted source
Sirarat Sarntivijai

ELIXIR-EXCELERATE: establishing Europe's data infrastructure for the life science research of the future.

The EMBO journal
2021-02 | Journal article
DOI: 10.15252/embj.2020107409
PMID: 33565128
PMC: PMC7957415
Contributors: Harrow J; Hancock J; ELIXIR-EXCELERATE Community; Blomberg N
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

An intrinsically disordered proteins community for ELIXIR.

F1000Research
2019-10 | Journal article
DOI: 10.12688/f1000research.20136.1
PMID: 31824649
PMC: PMC6880265
Contributors: Davey NE; Babu MM; Blackledge M; Bridge A; Capella-Gutierrez S; Dosztanyi Z; Drysdale R; Edwards RJ; Elofsson A; Felli IC et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

BMC bioinformatics
2019-04 | Journal article
DOI: 10.1186/s12859-019-2723-7
PMID: 31272389
PMC: PMC6509805
Contributors: He Y; Duncan WD; Cooper DJ; Hansen J; Iyengar R; Ong E; Walker K; Tibi O; Smith S; Serra LM et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Bringing data to life: data management for the biomolecular sciences

2019-01 | Other
DOI: 10.6019/tol.data_management-w.2018.00001.1
OTHER-ID:

C7976
Contributors: Teperek M; Türkyilmaz-van der Velden Y; Birney E; Busch-Nentwich E; George N; Cochrane K; Levchenko M; Sarntivijai S; Jones S; Hooft R et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions.

2017 | Journal article
DOI: 10.1177/1177625017696075
PMID: 28469412
PMC: PMC5398297
Contributors: Zaman S; Sarntivijai S; Abernethy DR
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.

BMC bioinformatics
2017-12 | Journal article
DOI: 10.1186/s12859-017-1976-2
PMID: 29322916
Contributors: Sarntivijai S; Diehl AD; He Y
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

BMC bioinformatics
2017-12 | Journal article
DOI: 10.1186/s12859-017-1979-z
PMID: 29322915
Contributors: Ong E; Sarntivijai S; Jupp S; Parkinson H; He Y
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

BMC bioinformatics
2017-12 | Journal article
DOI: 10.1186/s12859-017-1981-5
PMID: 29322930
Contributors: Ong E; Xie J; Ni Z; Liu Q; Sarntivijai S; Lin Y; Cooper D; Terryn R; Stathias V; Chung C et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Usage of cell nomenclature in biomedical literature.

BMC bioinformatics
2017-12 | Journal article
DOI: 10.1186/s12859-017-1978-0
PMID: 29322912
Contributors: Kafkas Ş; Sarntivijai S; Hoehndorf R
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Building bridges between cellular and molecular structural biology.

2017-07 | Journal article
DOI: 10.7554/elife.25835
PMID: 28682240
Contributors: Patwardhan A; Brandt R; Butcher SJ; Collinson L; Gault D; Grünewald K; Hecksel C; Huiskonen JT; Iudin A; Jones ML et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Open Targets: a platform for therapeutic target identification and validation.

2017-01 | Journal article
DOI: 10.1093/nar/gkw1055
PMID: 27899665
PMC: PMC5210543
Contributors: Koscielny G; An P; Carvalho-Silva D; Cham JA; Fumis L; Gasparyan R; Hasan S; Karamanis N; Maguire M; Papa E et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Reporting phenotypes in mouse models when considering body size as a potential confounder.

2016 | Journal article
DOI: 10.1186/s13326-016-0050-8
PMID: 26865945
PMC: PMC4748495
Contributors: Oellrich A; Meehan TF; Parkinson H; Sarntivijai S; White JK; Karp NA
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.

2016 | Journal article
DOI: 10.1186/s13326-016-0055-3
PMID: 27042287
PMC: PMC4818523
Contributors: Jupp S; Burdett T; Welter D; Sarntivijai S; Parkinson H; Malone J
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation

Journal of Biomedical Semantics
2016-12 | Journal article
DOI: 10.1186/s13326-016-0051-7
Source: check_circle
Crossref

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

2016-07 | Journal article
DOI: 10.1186/s13326-016-0088-7
PMID: 27377652
PMC: PMC4932724
Contributors: Diehl AD; Meehan TF; Bradford YM; Brush MH; Dahdul WM; Dougall DS; He Y; Osumi-Sutherland D; Ruttenberg A; Sarntivijai S et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Linking MedDRA®-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors

Drug Safety
2016-07-22 | Journal article
DOI: 10.1007/s40264-016-0414-0
Contributors: Sirarat Sarntivijai; Shelley Zhang; Desikan G. Jagannathan; Shadia Zaman; Keith K. Burkhart; Gilbert S. Omenn; Yongqun He; Brian D. Athey; Darrell R. Abernethy
Source: check_circle
Crossref

CLO: The cell line ontology.

2014 | Journal article
DOI: 10.1186/2041-1480-5-37
PMID: 25852852
PMC: PMC4387853
Contributors: Sarntivijai S; Lin Y; Xiang Z; Meehan TF; Diehl AD; Vempati UD; Schürer SC; Pang C; Malone J; Parkinson H et al.
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

OAE: The Ontology of Adverse Events.

2014 | Journal article
DOI: 10.1186/2041-1480-5-29
PMID: 25093068
PMC: PMC4120740
Contributors: He Y; Sarntivijai S; Lin Y; Xiang Z; Guo A; Zhang S; Jagannathan D; Toldo L; Tao C; Smith B
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Use of internet search logs to evaluate potential drug adverse events.

2014-08 | Journal article
DOI: 10.1038/clpt.2014.115
PMID: 25056395
Contributors: Sarntivijai S; Abernethy DR
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines.

2012 | Journal article
DOI: 10.1371/journal.pone.0049941
PMID: 23209624
PMC: PMC3509157
Contributors: Sarntivijai S; Xiang Z; Shedden KA; Markel H; Omenn GS; Athey BD; He Y
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

A bioinformatics analysis of the cell line nomenclature.

2008-12 | Journal article
DOI: 10.1093/bioinformatics/btn502
PMID: 18849319
PMC: PMC2639272
Contributors: Sarntivijai S; Ade AS; Athey BD; States DJ
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

The Cell Line Ontology and its use in tagging cell line names in biomedical text.

2007 | Journal article
PMID: 18694200
Contributors: Sarntivijai S; Ade AS; Athey BD; States DJ
Source: Self-asserted source
Sirarat Sarntivijai via Europe PubMed Central

Peer review (2 reviews for 1 publication/grant)

Review activity for Faculty Opinions (2)
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