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Employment (1)

Swiss Federal Institute of Technology Lausanne, EPFL: Lausanne, Vaud, CH

2016-09-01 to present | Professor (Institute of BioEngineering, School of Life Sciences)
Employment
Source: Self-asserted source
Andrew Oates

Education and qualifications (2)

University of Melbourne: Melbourne, VIC, AU

PhD (Ludwig Institute for Cancer Research)
Education
Source: Self-asserted source
Andrew Oates

University of Adelaide: Adelaide, SA, AU

Bachelor of Science
Education
Source: Self-asserted source
Andrew Oates

Works (50 of 106)

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Page 1 of 3

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

eLife
2024-12-13 | Journal article
DOI: 10.7554/eLife.93764.3
Contributors: Laurel A Rohde; Arianne Bercowsky-Rama; Guillaume Valentin; Sundar Ram Naganathan; Ravi A Desai; Petr Strnad; Daniele Soroldoni; Andrew C Oates
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Crossref

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

eLife
2024-12-13 | Journal article
DOI: 10.7554/eLife.93764
Contributors: Laurel A Rohde; Arianne Bercowsky-Rama; Guillaume Valentin; Sundar Ram Naganathan; Ravi A Desai; Petr Strnad; Daniele Soroldoni; Andrew C Oates
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Crossref

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

2024-08-28 | Preprint
DOI: 10.7554/eLife.93764.2
Contributors: Laurel A Rohde; Arianne Bercowsky-Rama; Guillaume Valentin; Sundar Ram Naganathan; Ravi A Desai; Petr Strnad; Daniele Soroldoni; Andrew C Oates
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Crossref

Multiple Notch ligands in the synchronization of the segmentation clock

2024-08-08 | Preprint
DOI: 10.1101/2024.08.06.606905
Contributors: Marcos Wappner; Koichiro Uriu; Andrew C. Oates; Luis G. Morelli
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Crossref

Open-source microscope add-on for structured illumination microscopy.

Nature communications
2024-02 | Journal article
DOI: 10.1038/s41467-024-45567-7
PMID: 38378733
PMC: PMC10879112
Contributors: Hannebelle MTM; Raeth E; Leitao SM; Lukeš T; Pospíšil J; Toniolo C; Venzin OF; Chrisnandy A; Swain PP; Ronceray N et al.
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

2024-02-13 | Preprint
DOI: 10.7554/eLife.93764.1
Contributors: Laurel A. Rohde; Arianne Bercowsky-Rama; Guillaume Valentin; Sundar Ram Naganathan; Ravi A. Desai; Petr Strnad; Daniele Soroldoni; Andrew C. Oates
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Crossref

A Robotic Surgery Platform for Automated Tissue Micromanipulation in Zebrafish Embryos

IEEE Robotics and Automation Letters
2024-01 | Journal article
DOI: 10.1109/LRA.2023.3333690
Contributors: Ece Özelçi; Erfan Etesami; Laurel A. Rohde; Andrew C. Oates; Mahmut Selman Sakar
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Crossref

Single-cell transcriptional dynamics in a living vertebrate

2024-01 | Preprint
DOI: 10.1101/2024.01.03.574108
PPR: PPR782669
Contributors: Eck E; Moretti B; Schlomann BH; Bragantini J; Lange M; Zhao X; VijayKumar S; Valentin G; Loureiro C; Soroldoni D et al.
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Clock driven waves of Tbx6 expression prefigure somite boundaries

2023-11-10 | Preprint
DOI: 10.1101/2023.11.09.566373
Contributors: Olivier F. Venzin; Chloé Jollivet; Nicolas Chiaruttini; Olga Rosspopoff; Clément Helsens; Luis G. Morelli; Koichiro Uriu; Andrew C. Oates
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Crossref

Identification of side effects of COVID-19 drug candidates on embryogenesis using an integrated zebrafish screening platform

Scientific Reports
2023-10-09 | Journal article
DOI: 10.1038/s41598-023-43911-3
Contributors: Alexander Ernst; Indre Piragyte; Ayisha Marwa MP; Ngoc Dung Le; Denis Grandgirard; Stephen L. Leib; Andrew Oates; Nadia Mercader
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Crossref

Identification of side effects of COVID-19 drug candidates on embryogenesis using an integrated zebrafish screening platform

2023-06-30 | Preprint
DOI: 10.1101/2023.06.29.547094
Contributors: Alexander Ernst; Indre Piragyte; MP Ayisha Marwa; Ngoc Dung Le; Denis Grandgirard; Stephen L. Leib; Andrew Oates; Nadia Mercader
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Crossref

But, what are the cells doing? Image Analysis pipeline to follow single cells in the zebrafish embryo

2023-06-04 | Preprint
DOI: 10.1101/2023.06.01.543221
Contributors: Arianne Bercowsky-Rama; Olivier F. Venzin; Laurel A. Rohde; Nicolas Chiaruttini; Andrew C. Oates
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Crossref

Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation

Nature Communications
2022-12-24 | Journal article
DOI: 10.1038/s41467-022-35632-4
Contributors: Ece Özelçi; Erik Mailand; Matthias Rüegg; Andrew C. Oates; Mahmut Selman Sakar
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Crossref

Preparation of Single-Somite Explants from Zebrafish Embryos.

Journal of visualized experiments : JoVE
2022-06 | Journal article
DOI: 10.3791/63196
PMID: 35781468
Contributors: Naganathan SR; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Left–right symmetry of zebrafish embryos requires somite surface tension

Nature
2022-05-19 | Journal article
DOI: 10.1038/s41586-022-04646-9
Contributors: Sundar R. Naganathan; Marko Popović; Andrew C. Oates
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Crossref

Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation

2022-04-26 | Preprint
DOI: 10.1101/2022.04.25.489395
Contributors: Ece Özelçi; Erik Mailand; Matthias Rüegg; Andrew C. Oates; Mahmut Selman Sakar
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Crossref

Towards a physical understanding of developmental patterning

Nature Reviews Genetics
2021-08 | Journal article
DOI: 10.1038/s41576-021-00355-7
Contributors: Jose Negrete, Jr; Andrew C. Oates
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Crossref

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

2021-05-30 | Preprint
DOI: 10.1101/2021.05.29.446196
Contributors: Laurel A. Rohde; Arianne Bercowsky-Rama; Guillaume Valentin; Sundar Ram Naganathan; Ravi A. Desai; Petr Strnad; Daniele Soroldoni; Andrew C. Oates
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Crossref

Theory of time delayed genetic oscillations with external noisy regulation

New Journal of Physics
2021-03-01 | Journal article
DOI: 10.1088/1367-2630/abd80b
Contributors: Jose Negrete, Jr; Iván M Lengyel; Laurel Rohde; Ravi A Desai; Andrew C Oates; Frank Jülicher
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Crossref

From local resynchronization to global pattern recovery in the zebrafish segmentation clock

eLife
2021-02-15 | Journal article
DOI: 10.7554/eLife.61358
Contributors: Koichiro Uriu; Bo-Kai Liao; Andrew C Oates; Luis G Morelli
Source: check_circle
Crossref

Theory of genetic oscillations with external noisy regulation

2020-08 | Preprint
DOI: 10.1101/2020.08.07.241042
PPR: PPR198439
Contributors: Negrete J; Lengyel IM; Rohde L; Desai RA; Oates AC; Jülicher F
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Somite surface tension buffers imprecise segment lengths to ensure left-right symmetry

2020-08-14 | Preprint
DOI: 10.1101/2020.08.14.251645
Contributors: Sundar R. Naganathan; Marko Popović; Andrew C. Oates
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Crossref

Waiting on the Fringe: cell autonomy and signaling delays in segmentation clocks.

Current opinion in genetics & development
2020-06 | Journal article
DOI: 10.1016/j.gde.2020.04.008
PMID: 32505051
Contributors: Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

From local resynchronization to global pattern recovery in the zebrafish segmentation clock

2020-06-23 | Preprint
DOI: 10.1101/2020.06.22.166215
Contributors: Koichiro Uriu; Bo-Kai Liao; Andrew C. Oates; Luis G. Morelli
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Crossref

Patterning and mechanics of somite boundaries in zebrafish embryos.

Seminars in cell & developmental biology
2020-05 | Journal article
DOI: 10.1016/j.semcdb.2020.04.014
PMID: 32444288
Contributors: Naganathan SR; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

What are you synching about? Emerging complexity of Notch signaling in the segmentation clock.

Developmental biology
2019-07 | Journal article
DOI: 10.1016/j.ydbio.2019.06.024
PMID: 31302101
Contributors: Venzin OF; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Embryonic lateral inhibition as optical modes: An analytical framework for mesoscopic pattern formation.

Physical review. E
2019-04 | Journal article
DOI: 10.1103/physreve.99.042417
PMID: 31108612
Contributors: Negrete J; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Detection of mRNA by Whole Mount <i>in situ</i> Hybridization and DNA Extraction for Genotyping of Zebrafish Embryos.

Bio-protocol
2019-03 | Journal article
DOI: 10.21769/bioprotoc.3193
PMID: 33654992
PMC: PMC7854236
Contributors: Narayanan R; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock

eLife
2018-04-06 | Journal article
DOI: 10.7554/eLife.33843
Contributors: Laura Lleras Forero; Rachna Narayanan; Leonie FA Huitema; Maaike VanBergen; Alexander Apschner; Josi Peterson-Maduro; Ive Logister; Guillaume Valentin; Luis G Morelli; Andrew C Oates et al.
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Crossref

Small molecule screen in embryonic zebrafish using modular variations to target segmentation

Nature Communications
2017-12-01 | Journal article
DOI: 10.1038/s41467-017-01469-5
Contributors: Sandra Richter; Ulrike Schulze; Pavel Tomançak; Andrew C. Oates
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Crossref

Delta-Notch signalling in segmentation

Arthropod Structure & Development
2017-05 | Journal article
DOI: 10.1016/j.asd.2016.11.007
Contributors: Bo-Kai Liao; Andrew C. Oates
Source: check_circle
Crossref

The Sweetness of Embryonic Elongation and Differentiation.

Developmental cell
2017-02 | Journal article
DOI: 10.1016/j.devcel.2017.02.012
PMID: 28245916
Contributors: Naganathan SR; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Object Segmentation and Ground Truth in 3D Embryonic Imaging.

PloS one
2016-06 | Journal article
DOI: 10.1371/journal.pone.0150853
PMID: 27332860
PMC: PMC4917178
Contributors: Rajasekaran B; Uriu K; Valentin G; Tinevez JY; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Faster embryonic segmentation through elevated Delta-Notch signalling

Nature Communications
2016-06-15 | Journal article
DOI: 10.1038/ncomms11861
Contributors: Bo-Kai Liao; David J. Jörg; Andrew C. Oates
Source: check_circle
Crossref

Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock

eLife
2016-02-13 | Journal article
DOI: 10.7554/eLife.08438
Contributors: Alexis B Webb; Iván M Lengyel; David J Jörg; Guillaume Valentin; Frank Jülicher; Luis G Morelli; Andrew C Oates
Source: check_circle
Crossref

Timing by rhythms: Daily clocks and developmental rulers

Development, Growth & Differentiation
2016-01 | Journal article
DOI: 10.1111/dgd.12242
Contributors: Alexis B. Webb; Andrew C. Oates
Source: check_circle
Crossref

Continuum theory of gene expression waves during vertebrate segmentation.

New journal of physics
2015-09 | Journal article
DOI: 10.1088/1367-2630/17/9/093042
PMID: 28725158
PMC: PMC5497808
Contributors: Jörg DJ; Morelli LG; Soroldoni D; Oates AC; Jülicher F
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Force transmission during adhesion-independent migration.

Nature cell biology
2015-03 | Journal article
DOI: 10.1038/ncb3134
PMID: 25774834
PMC: PMC6485532
Contributors: Bergert M; Erzberger A; Desai RA; Aspalter IM; Oates AC; Charras G; Salbreux G; Paluch EK
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish.

Development (Cambridge, England)
2015-02 | Journal article
DOI: 10.1242/dev.113431
PMID: 25725067
PMC: PMC4360180
Contributors: Windner SE; Doris RA; Ferguson CM; Nelson AC; Valentin G; Tan H; Oates AC; Wardle FC; Devoto SH
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Chevron formation of the zebrafish muscle segments.

The Journal of experimental biology
2014-09 | Journal article
DOI: 10.1242/jeb.102202
PMID: 25267843
PMC: PMC4213178
Contributors: Rost F; Eugster C; Schröter C; Oates AC; Brusch L
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells.

Journal of visualized experiments : JoVE
2014-07 | Journal article
DOI: 10.3791/50307
PMID: 25078855
PMC: PMC4511270
Contributors: Webb AB; Soroldoni D; Oswald A; Schindelin J; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Genetic oscillations. A Doppler effect in embryonic pattern formation.

Science (New York, N.Y.)
2014-07 | Journal article
DOI: 10.1126/science.1253089
PMID: 25013078
Contributors: Soroldoni D; Jörg DJ; Morelli LG; Richmond DL; Schindelin J; Jülicher F; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Interplay between intercellular signaling and cell movement in development.

Seminars in cell & developmental biology
2014-06 | Journal article
DOI: 10.1016/j.semcdb.2014.05.011
PMID: 24882723
Contributors: Uriu K; Morelli LG; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Wnt-regulated dynamics of positional information in zebrafish somitogenesis.

Development (Cambridge, England)
2014-03 | Journal article
DOI: 10.1242/dev.093435
PMID: 24595291
PMC: PMC3943186
Contributors: Bajard L; Morelli LG; Ares S; Pécréaux J; Jülicher F; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Opening a can of centipedes: new insights into mechanisms of body segmentation.

BMC biology
2013-11 | Journal article
DOI: 10.1186/1741-7007-11-116
PMID: 24289333
PMC: PMC4220798
Contributors: Valentin G; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

The segmentation clock: inherited trait or universal design principle?

Current opinion in genetics & development
2012-11 | Journal article
DOI: 10.1016/j.gde.2012.10.003
PMID: 23149154
Contributors: Richmond DL; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Topology and dynamics of the zebrafish segmentation clock core circuit.

PLoS biology
2012-07 | Journal article
DOI: 10.1371/journal.pbio.1001364
PMID: 22911291
PMC: PMC3404119
Contributors: Schröter C; Ares S; Morelli LG; Isakova A; Hens K; Soroldoni D; Gajewski M; Jülicher F; Maerkl SJ; Deplancke B et al.
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Collective modes of coupled phase oscillators with delayed coupling.

Physical review letters
2012-05 | Journal article
DOI: 10.1103/physrevlett.108.204101
PMID: 23003147
Contributors: Ares S; Morelli LG; Jörg DJ; Oates AC; Jülicher F
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Optimal cellular mobility for synchronization arising from the gradual recovery of intercellular interactions.

Physical biology
2012-05 | Journal article
DOI: 10.1088/1478-3975/9/3/036006
PMID: 22562967
Contributors: Uriu K; Ares S; Oates AC; Morelli LG
Source: Self-asserted source
Andrew Oates via Europe PubMed Central

Breathe in and straighten your back: hypoxia, notch, and scoliosis.

Cell
2012-04 | Journal article
DOI: 10.1016/j.cell.2012.03.024
PMID: 22500793
Contributors: Bajard L; Oates AC
Source: Self-asserted source
Andrew Oates via Europe PubMed Central
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Peer review (2 reviews for 2 publications/grants)

Review activity for Nature communications (1)
Review activity for Nature reviews. (1)
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