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Regeneron (United States): Tarrytown, New York, US

2023-07-01 to present | Director Statistical Genetics (RGC)
Employment
Source: Self-asserted source
Olivier Delaneau

University of Lausanne: Lausanne, CH

2018-09-01 to 2023-06-30 | Assistant Professor (Computational Biology)
Employment
Source: Self-asserted source
Olivier Delaneau

Works (50 of 88)

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Page 1 of 2

Parent-of-Origin inference and its role in the genetic architecture of complex traits: evidence from ∼220,000 individuals

2024-12-05 | Preprint
DOI: 10.1101/2024.12.03.24318392
Contributors: Robin J. Hofmeister; Théo Cavinato; Adriaan van der Graaf; Fanny-Dhelia Pajuste; Jaanika Kronberg; Nele Taba; Reedik Mägi; Simone Rubinacci; Lili Milani; Olivier Delaneau et al.
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Crossref

Yield of genetic association signals from genomes, exomes and imputation in the UK Biobank

Nature Genetics
2024-11 | Journal article
DOI: 10.1038/s41588-024-01930-4
Contributors: Sheila M. Gaynor; Tyler Joseph; Xiaodong Bai; Yuxin Zou; Boris Boutkov; Evan K. Maxwell; Olivier Delaneau; Robin J. Hofmeister; Olga Krasheninina; Suganthi Balasubramanian et al.
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Crossref

A resampling-based approach to share reference panels

Nature Computational Science
2024-05-14 | Journal article
DOI: 10.1038/s43588-024-00630-7
Contributors: Théo Cavinato; Simone Rubinacci; Anna-Sapfo Malaspinas; Olivier Delaneau
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Crossref

Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA

2023-12-17 | Preprint
DOI: 10.1101/2023.12.17.572049
Contributors: Antonio Garrido Marques; Simone Rubinacci; Anna-Sapfo Malaspinas; Olivier Delaneau; Bárbara Sousa da Mota
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Crossref

Non-coding rare variant associations with blood traits on 166 740 UK Biobank genomes

2023-12-04 | Preprint
DOI: 10.1101/2023.12.01.569422
Contributors: Diogo M. Ribeiro; Olivier Delaneau
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Crossref

Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank

Nature Genetics
2023-07 | Journal article
DOI: 10.1038/s41588-023-01415-w
Contributors: Robin J. Hofmeister; Diogo M. Ribeiro; Simone Rubinacci; Olivier Delaneau
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Crossref

Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes

Nature Genetics
2023-07 | Journal article
DOI: 10.1038/s41588-023-01438-3
Contributors: Simone Rubinacci; Robin J. Hofmeister; Bárbara Sousa da Mota; Olivier Delaneau
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Crossref

Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line

Communications Biology
2023-05-26 | Journal article
DOI: 10.1038/s42003-023-04954-4
Contributors: Chaymae Ziyani; Olivier Delaneau; Diogo M. Ribeiro
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Crossref

A resampling-based approach to share reference panels

2023-04-07 | Preprint
DOI: 10.1101/2023.04.07.535812
Contributors: Théo Cavinato; Simone Rubinacci; Anna-Sapfo Malaspinas; Olivier Delaneau
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Crossref

Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity

Communications Biology
2023-03-28 | Journal article
DOI: 10.1038/s42003-023-04688-3
Contributors: Diana Avalos; Guillaume Rey; Diogo M. Ribeiro; Anna Ramisch; Emmanouil T. Dermitzakis; Olivier Delaneau
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Crossref

Mapache: a flexible pipeline to map ancient DNA

Bioinformatics
2023-02-03 | Journal article
DOI: 10.1093/bioinformatics/btad028
Contributors: Samuel Neuenschwander; Diana I Cruz Dávalos; Lucas Anchieri; Bárbara Sousa da Mota; Davide Bozzi; Simone Rubinacci; Olivier Delaneau; Simon Rasmussen; Anna-Sapfo Malaspinas; Can Alkan
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Crossref

SURFBAT: a surrogate family-based association test building on large imputation reference panels

2023-01-11 | Preprint
DOI: 10.1101/2023.01.10.523404
Contributors: AF Herzig; S Rubinacci; G Marenne; H Perdry; C Dina; R Redon; O Delaneau; E Génin
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Crossref

Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes

2022-11-29 | Preprint
DOI: 10.1101/2022.11.28.518213
Contributors: Simone Rubinacci; Robin Hofmeister; Bárbara Sousa da Mota; Olivier Delaneau
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Crossref

Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank

2022-11-08 | Preprint
DOI: 10.21203/rs.3.rs-2211394/v1
Contributors: Olivier Delaneau; Robin Hofmeister; Diogo M. Ribeiro; Simone Rubinacci
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Crossref

Parent-of-Origin inference for biobanks

Nature Communications
2022-11-05 | Journal article
DOI: 10.1038/s41467-022-34383-6
Contributors: Robin J. Hofmeister; Simone Rubinacci; Diogo M. Ribeiro; Alfonso Buil; Zoltán Kutalik; Olivier Delaneau
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Crossref

Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank

2022-10-21 | Preprint
DOI: 10.1101/2022.10.19.512867
Contributors: Robin J. Hofmeister; Diogo M. Ribeiro; Simone Rubinacci; Olivier Delaneau
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Crossref

Widespread enhancer co-activity identified by multimodal single cell analysis

2022-10-17 | Preprint
DOI: 10.1101/2022.10.13.511947
Contributors: Chaymae Ziyani; Olivier Delaneau; Diogo M. Ribeiro
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Crossref

Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis

Communications Biology
2022-08-26 | Journal article
DOI: 10.1038/s42003-022-03831-w
Contributors: Diogo M. Ribeiro; Chaymae Ziyani; Olivier Delaneau
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Crossref

Genetic variation in correlated regulatory regions of immunity

2022-08-17 | Preprint
DOI: 10.21203/rs.3.rs-1897960/v1
Contributors: Diana Avalos; Guillaume Rey; Diogo M. Ribeiro; Anna Ramisch; Emmanouil Dermitzakis; Olivier Delaneau
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Crossref

Genetic variation in correlated regulatory region of Immunity

2022-07-22 | Preprint
DOI: 10.1101/2022.07.21.500922
Contributors: Diana Avalos; Guillaume Rey; Diogo M. Ribeiro; Anna Ramisch; Emmanouil T. Dermitzakis; Olivier Delaneau
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Crossref

Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis

2021-12-16 | Preprint
DOI: 10.1101/2021.12.14.472573
Contributors: Diogo M. Ribeiro; Chaymae Ziyani; Olivier Delaneau
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Crossref

Parent-of-origin effects in the UK Biobank

2021-11-19 | Preprint
DOI: 10.21203/rs.3.rs-1073842/v1
Contributors: Olivier Delaneau; Robin Hofmeister; Simone Rubinacci; Diogo Ribeiro; Zoltan Kutalik; Alfonso Buil
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Crossref

Parent-of-origin effects in the UK Biobank

2021-11-06 | Other
DOI: 10.1101/2021.11.03.467079
Contributors: R. J. Hofmeister; S. Rubinacci; D. M. Ribeiro; Z. Kutalik; A. Buil; O. Delaneau
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Crossref

The molecular basis, genetic control and pleiotropic effects of local gene co-expression

Nature Communications
2021-08-10 | Journal article
DOI: 10.1038/s41467-021-25129-x
Contributors: Diogo M. Ribeiro; Simone Rubinacci; Anna Ramisch; Robin J. Hofmeister; Emmanouil T. Dermitzakis; Olivier Delaneau
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Crossref

Publisher Correction: Efficient phasing and imputation of low-coverage sequencing data using large reference panels

Nature Genetics
2021-03-20 | Journal article
DOI: 10.1038/s41588-021-00788-0
Contributors: Simone Rubinacci; Diogo M. Ribeiro; Robin J. Hofmeister; Olivier Delaneau
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Crossref

Efficient phasing and imputation of low-coverage sequencing data using large reference panels

Nature Genetics
2021-01 | Journal article
DOI: 10.1038/s41588-020-00756-0
Contributors: Simone Rubinacci; Diogo M. Ribeiro; Robin J. Hofmeister; Olivier Delaneau
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Crossref

The molecular basis, genetic control and pleiotropic effects of local gene co-expression

2020-12-12 | Preprint
DOI: 10.1101/2020.12.11.421396
Contributors: Diogo M. Ribeiro; Simone Rubinacci; Anna Ramisch; Robin J. Hofmeister; Emmanouil T. Dermitzakis; Olivier Delaneau
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Crossref

Genotype imputation using the Positional Burrows Wheeler Transform

PLOS Genetics
2020-11-16 | Journal article
DOI: 10.1371/journal.pgen.1009049
Contributors: Simone Rubinacci; Paul Scheet; Olivier Delaneau; Jonathan Marchini
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Crossref

Efficient phasing and imputation of low-coverage sequencing data using large reference panels

2020-04-14 | Preprint
DOI: 10.1101/2020.04.14.040329
Contributors: S. Rubinacci; D.M. Ribeiro; R. Hofmeister; O. Delaneau
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Crossref

Gene regulation contributes to explain the impact of early life socioeconomic disadvantage on adult inflammatory levels in two European cohort studies

2020-04-06 | Other
DOI: 10.1101/2020.04.03.20050872
Contributors: Cristian Carmeli; Zoltán Kutalik; Pashupati P. Mishra; Eleonora Porcu; Cyrille Delpierre; Olivier Delaneau; Michelle Kelly-Irving; Murielle Bochud; Nasser A. Dhayat; Belen Ponte et al.
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Crossref

Accurate, scalable and integrative haplotype estimation

Nature Communications
2019-11-28 | Journal article
DOI: 10.1038/s41467-019-13225-y
Contributors: Olivier Delaneau; Jean-François Zagury; Matthew R. Robinson; Jonathan L. Marchini; Emmanouil T. Dermitzakis
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Crossref

Genotype imputation using the Positional Burrows Wheeler Transform

2019-10-09 | Other
DOI: 10.1101/797944
Contributors: Simone Rubinacci; Olivier Delaneau; Jonathan Marchini
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Crossref

Chromatin three-dimensional interactions mediate genetic effects on gene expression

Science
2019-05-03 | Journal article
DOI: 10.1126/science.aat8266
Contributors: O. Delaneau; M. Zazhytska; C. Borel; G. Giannuzzi; G. Rey; C. Howald; S. Kumar; H. Ongen; K. Popadin; D. Marbach et al.
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Crossref

Expression estimation and eQTL mapping for HLA genes with a personalized pipeline.

PLoS genetics
2019-04 | Journal article
DOI: 10.1371/journal.pgen.1008091
PMID: 31009447
PMC: PMC6497317
Contributors: Aguiar VRC; César J; Delaneau O; Dermitzakis ET; Meyer D
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment.

Nature neuroscience
2019-01 | Journal article
DOI: 10.1038/s41593-018-0320-0
PMID: 30692689
PMC: PMC6497521
Contributors: Schork AJ; Won H; Appadurai V; Nudel R; Gandal M; Delaneau O; Revsbech Christiansen M; Hougaard DM; Bækved-Hansen M; Bybjerg-Grauholm J et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Integrative haplotype estimation with sub-linear complexity

2018-12-13 | Other
DOI: 10.1101/493403
Contributors: Olivier Delaneau; Jean-Francois Zagury; Matthew R Robinson; Jonathan Marchini; Emmanouil Dermitzakis
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Crossref

The UK Biobank resource with deep phenotyping and genomic data.

Nature
2018-10 | Journal article
DOI: 10.1038/s41586-018-0579-z
PMID: 30305743
PMC: PMC6786975
Contributors: Bycroft C; Freeman C; Petkova D; Band G; Elliott LT; Sharp K; Motyer A; Vukcevic D; Delaneau O; O'Connell J et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

A genome-wide association study for shared risk across major psychiatric disorders in a nation-wide birth cohort implicates fetal neurodevelopment as a key mediator

2017-12 | Other
DOI: 10.1101/240911
OTHER-ID:

PPR20878
Contributors: Schork AJ; Won H; Appadurai V; Nudel R; Gandal M; Delaneau O; Hougaard DM; Bækved-Hansen M; Bybjerg-Grauholm J; Giørtz Pedersen M et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

2017-11 | Other
DOI: 10.1101/208330
OTHER-ID:

PPR24007
Contributors: Waszak SM; Tiao G; Zhu B; Rausch T; Muyas F; Rodríguez-Martín B; Rabionet R; Yakneen S; Escaramis G; Li Y et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

The effect of genetic variation on promoter usage and enhancer activity.

Nature communications
2017-11 | Journal article
DOI: 10.1038/s41467-017-01467-7
PMID: 29116076
PMC: PMC5677018
Contributors: Garieri M; Delaneau O; Santoni F; Fish RJ; Mull D; Carninci P; Dermitzakis ET; Antonarakis SE; Fort A
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Co-expression networks reveal the tissue-specific regulation of transcription and splicing.

Genome research
2017-10 | Journal article
DOI: 10.1101/gr.216721.116
PMID: 29021288
PMC: PMC5668942
Contributors: Saha A; Kim Y; Gewirtz ADH; Jo B; Gao C; McDowell IC; GTEx Consortium; Engelhardt BE; Battle A
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Dynamic landscape and regulation of RNA editing in mammals.

Nature
2017-10 | Journal article
DOI: 10.1038/nature24041
PMID: 29022589
PMC: PMC5723435
Contributors: Tan MH; Li Q; Shanmugam R; Piskol R; Kohler J; Young AN; Liu KI; Zhang R; Ramaswami G; Ariyoshi K et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Estimating the causal tissues for complex traits and diseases.

Nature genetics
2017-10 | Journal article
DOI: 10.1038/ng.3981
PMID: 29058715
Contributors: Ongen H; Brown AA; Delaneau O; Panousis NI; Nica AC; GTEx Consortium; Dermitzakis ET
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Genetic effects on gene expression across human tissues.

Nature
2017-10 | Journal article
DOI: 10.1038/nature24277
PMID: 29022597
PMC: PMC5776756
Contributors: GTEx Consortium; Laboratory; Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Montgomery SB
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis.

Genome research
2017-10 | Journal article
DOI: 10.1101/gr.216754.116
PMID: 29021290
PMC: PMC5668943
Contributors: Yang F; Wang J; GTEx Consortium; Pierce BL; Chen LS
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Landscape of X chromosome inactivation across human tissues.

Nature
2017-10 | Journal article
DOI: 10.1038/nature24265
PMID: 29022598
PMC: PMC5685192
Contributors: Tukiainen T; Villani AC; Yen A; Rivas MA; Marshall JL; Satija R; Aguirre M; Gauthier L; Fleharty M; Kirby A et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.

Nature genetics
2017-10 | Journal article
DOI: 10.1038/ng.3979
PMID: 29058714
Contributors: Brown AA; Viñuela A; Delaneau O; Spector TD; Small KS; Dermitzakis ET
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

The impact of rare variation on gene expression across tissues.

Nature
2017-10 | Journal article
DOI: 10.1038/nature24267
PMID: 29022581
PMC: PMC5877409
Contributors: Li X; Kim Y; Tsang EK; Davis JR; Damani FN; Chiang C; Hess GT; Zappala Z; Strober BJ; Scott AJ et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

Genome-wide genetic data on ~500,000 UK Biobank participants

2017-07 | Other
DOI: 10.1101/166298
OTHER-ID:

PPR26387
Contributors: Bycroft C; Freeman C; Petkova D; Band G; Elliott LT; Sharp K; Motyer A; Vukcevic D; Delaneau O; O’Connell J et al.
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central

MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.

Bioinformatics (Oxford, England)
2017-06 | Journal article
DOI: 10.1093/bioinformatics/btx074
PMID: 28186259
PMC: PMC6044394
Contributors: Fort A; Panousis NI; Garieri M; Antonarakis SE; Lappalainen T; Dermitzakis ET; Delaneau O
Source: Self-asserted source
Olivier Delaneau via Europe PubMed Central
Items per page:
Page 1 of 2

Peer review (6 reviews for 3 publications/grants)

Review activity for European journal of human genetics (1)
Review activity for Nature communications (2)
Review activity for Nature genetics. (3)
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