Personal information

Biography

David S. Goodsell holds a dual appointment as Professor of Computational Biology at the Scripps Research Institute and Research Professor at Rutgers State University. He divides his time between research and science outreach. His research centers on methods for computational structural biology and their application to drug design and cellular structure and function. This includes development of CellPack, a method for creating three-dimensional atomic models of cells, and AutoDock, the most widely-used computational docking program in the scientific community. He applies these methods to viral biology and structure and function of bacterial cells. In his science outreach work, he has developed new visual methods for exploring molecular and cellular structure. This includes three decades of work on depiction of the cellular mesoscale, and development of non-photorealistic rendering methods for molecular and cellular subjects. He creates outreach materials for the RCSB Protein Data Bank, including a popular monthly column that presents molecular structure and function for general audiences. He has written four general-interest books on molecular biology, cell biology and bionanotechnology, and collaborated with science museums, filmmakers, educators and popular authors on the creation of educational and outreach materials.

MyBibliography Link:
https://www.ncbi.nlm.nih.gov/sites/myncbi/1DC2wYciwsuQd/bibliography/44254495/public/?sortby=pubDate&sdirection=descending

Activities

Employment (2)

Rutgers The State University of New Jersey: New Brunswick, NJ, US

2016 to present (Center for Integrative Proteomics Research)
Employment
Source: Self-asserted source
David S. Goodsell

Scripps Research Institute: La Jolla, CA, US

1994 to present (Integrative Structural and Computational Biology)
Employment
Source: Self-asserted source
David S. Goodsell

Education and qualifications (1)

University of California Los Angeles: Los Angeles, CA, US

1982 to 1987 | Ph.D. (Biochemistry)
Education
Source: Self-asserted source
David S. Goodsell

Professional activities (4)

Protein Society: Baltimore, US

2022 | Carl Brändén Award
Distinction
Source: Self-asserted source
David S. Goodsell

American Crystallographic Association: Buffalo, US

2022 | Fankuchin Memorial Award
Distinction
Source: Self-asserted source
David S. Goodsell

Wellcome Trust: London, GB

2016 | Overall Winner, Wellcome Image Awards
Distinction
Source: Self-asserted source
David S. Goodsell

The Vesalius Trust for Visual Communication in the Health Sciences: Placitas, New Mexico, US

1999 | Vesalius Trust Frank Netter Award for Special Contributions to Health Science Education
Distinction
Source: Self-asserted source
David S. Goodsell

Funding (8)

Modeling and Interacting with the Visible Molecular Cell

2016-09-15 to 2026-07-31 | Grant
National Institute of General Medical Sciences (Bethesda, US)
GRANT_NUMBER: R01GM120604
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

An Interdisciplinary Approach to Biological Energy Transfer - Cross-Institutional Collaboration and Adaptation

2011-06-01 to 2015-05-31 | Grant
Directorate for STEM Education (Alexandria, US)
GRANT_NUMBER: 1044898
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

The Protein Structure Inittiative Knowledgebase

2010-07-01 to 2017-06-30 | Grant
National Institute of General Medical Sciences (Bethesda, US)
GRANT_NUMBER: U01GM093324
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

Resistance Driven Structural Design for HIV Therapies

2008-02-18 to 2012-08-31 | Grant
National Institute of General Medical Sciences (Bethesda, US)
GRANT_NUMBER: P01GM083658
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

Active Learning Modules for the Molecular BioSciences

2006-09-01 to 2010-02-28 | Grant
Directorate for STEM Education (Alexandria, US)
GRANT_NUMBER: 0618688
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

Using Physical Models to Enhance Biomolecular Education

2005-03-15 to 2006-06-30 | Grant
Directorate for STEM Education (Alexandria, US)
GRANT_NUMBER: 0442409
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

ITR/SY+PE+IM+AP Collaborative Research: Computer-Linked Auto-Fabricated Models for Education in Molecular Biology

2001-10-01 to 2005-09-30 | Grant
Directorate for Computer & Information Science & Engineering (Alexandria, US)
GRANT_NUMBER: 0121282
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

A Database of General Biomolecular Information for Education and Research

1999-09-01 to 2002-08-31 | Grant
Directorate for Biological Sciences (Alexandria, US)
GRANT_NUMBER: 9904796
Source: Self-asserted source
David S. Goodsell via DimensionsWizard

Works (33)

Integrative modeling of JCVI-Syn3A nucleoids with a modular approach

Current Research in Structural Biology
2024 | Journal article
Contributors: David S. Goodsell; Ludovic Autin
Source: check_circle
Crossref

Mesoscale explorer: Visual exploration of large‐scale molecular models

Protein Science
2024-10 | Journal article
Contributors: Alexander Rose; David Sehnal; David S. Goodsell; Ludovic Autin
Source: check_circle
Crossref

Mesoscale Explorer - Visual Exploration of Large-Scale Molecular Models

2024-09-03 | Preprint
Contributors: Alexander Rose; David Sehnal; David S. Goodsell; Ludovic Autin
Source: check_circle
Crossref

Depicting a cellular space occupied by condensates

Molecular Biology of the Cell
2023-09-01 | Journal article
Contributors: Daniel Liu; Margot Riggi; Hyun O. Lee; Simon L. Currie; David S. Goodsell; Janet H. Iwasa; Ofer Rog; Douglas Kellogg
Source: check_circle
Crossref

Changing Aesthetics in Biomolecular Graphics

IEEE Computer Graphics and Applications
2023-05-01 | Journal article
Contributors: Laura A. Garrison; David S. Goodsell; Stefan Bruckner
Source: check_circle
Crossref

An idea to explore: How an interdisciplinary undergraduate course exploring a global health challenge in molecular detail enabled science communication and collaboration in diverse audiences

Biochemistry and Molecular Biology Education
2023-03 | Journal article
Contributors: Shuchismita Dutta; Jennifer Jiang; Sutapa Ghosh; Shriya Patel; Charmi Bhikadiya; Robert Lowe; Maria Voigt; David Goodsell; Christine Zardecki; Stephen K. Burley
Source: check_circle
Crossref

Integrative visualization of the molecular structure of a cellular microdomain

Protein Science
2023-03 | Journal article
Contributors: David S. Goodsell; Keren Lasker
Source: check_circle
Crossref

Evaluation of AlphaFold2 structures as docking targets

Protein Science
2023-01 | Journal article
Contributors: Matthew Holcomb; Ya‐Ting Chang; David S. Goodsell; Stefano Forli
Source: check_circle
Crossref

Integrative structural modelling and visualisation of a cellular organelle

QRB Discovery
2022 | Journal article
Contributors: Ludovic Autin; Brett A. Barbaro; Andrew I. Jewett; Axel Ekman; Shruti Verma; Arthur J. Olson; David S. Goodsell
Source: check_circle
Crossref

Molecular explorations of cancer biology and therapeutics at PDB-101

Oncogene
2022-09-16 | Journal article
Contributors: David S. Goodsell; Shuchismita Dutta; Maria Voigt; Christine Zardecki; Stephen K. Burley
Source: check_circle
Crossref

Exploring protein symmetry at the RCSB Protein Data Bank

Emerging Topics in Life Sciences
2022-09-09 | Journal article
Contributors: Jose M. Duarte; Shuchismita Dutta; David S. Goodsell; Stephen K. Burley
Source: check_circle
Crossref

Integrative illustration of a JCVI-syn3A minimal cell

Journal of Integrative Bioinformatics
2022-08-16 | Journal article
Contributors: David S. Goodsell
Source: check_circle
Crossref

PDB‐101: Educational resources supporting molecular explorations through biology and medicine

Protein Science
2022-01 | Journal article
Contributors: Christine Zardecki; Shuchismita Dutta; David S. Goodsell; Robert Lowe; Maria Voigt; Stephen K. Burley
Source: check_circle
Crossref

RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens

Structure
2022-01 | Journal article
Contributors: David S. Goodsell; Stephen K. Burley
Source: check_circle
Crossref

Picturing science: using art and imagination to explore new worlds

The Biochemist
2021-10-01 | Journal article
Contributors: Beata E. Mierzwa; David S. Goodsell
Source: check_circle
Crossref

Art as a tool for science

Nature Structural & Molecular Biology
2021-05 | Journal article
Contributors: David S. Goodsell
Source: check_circle
Crossref

Molecular storytelling for online structural biology outreach and education

Structural Dynamics
2021-03-01 | Journal article
Contributors: David S. Goodsell; Shuchismita Dutta; Maria Voigt; Christine Zardecki
Source: check_circle
Crossref

Seeing the PDB

Journal of Biological Chemistry
2021-01 | Journal article
Contributors: Jane S. Richardson; David C. Richardson; David S. Goodsell
Source: check_circle
Crossref

TheAutoDocksuite at 30

Protein Science
2021-01 | Journal article
Contributors: David S. Goodsell; Michel F. Sanner; Arthur J. Olson; Stefano Forli
Source: check_circle
Crossref

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

Oncogene
2020-10-22 | Journal article
Contributors: David S. Goodsell; Stephen K. Burley
Source: check_circle
Crossref

Integrative illustration for coronavirus outreach

PLOS Biology
2020-08-06 | Journal article
Contributors: David S. Goodsell; Maria Voigt; Christine Zardecki; Stephen K. Burley
Source: check_circle
Crossref

Insights from 20 years of the Molecule of the Month

Biochemistry and Molecular Biology Education
2020-07 | Journal article
Contributors: David S. Goodsell; Christine Zardecki; Helen M. Berman; Stephen K. Burley
Source: check_circle
Crossref

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Protein Science
2020-01 | Journal article
Contributors: David S. Goodsell; Christine Zardecki; Luigi Di Costanzo; Jose M. Duarte; Brian P. Hudson; Irina Persikova; Joan Segura; Chenghua Shao; Maria Voigt; John D. Westbrook et al.
Source: check_circle
Crossref

Parallel Generation and Visualization of Bacterial Genome Structures

Computer Graphics Forum
2019-10 | Journal article
Contributors: T. Klein; P. Mindek; L. Autin; D. S. Goodsell; A. J. Olson; E. M. Gröller; I. Viola
Source: check_circle
Crossref

Symmetry at the Cellular Mesoscale

Symmetry
2019-09-16 | Journal article
Contributors: David S. Goodsell
Source: check_circle
Crossref

Scientific Delirium Madness 5.0: Gallery

Leonardo
2019-06 | Journal article
Contributors: Barbara H. Berrie; Alan Bogana; Sarah Rosalena Brady; Judith Dancoff; David S. Goodsell; Amy Landesberg; Hideo Mabuchi; Thomas C. Skalak; Anya Yermakova; Sebastián Pérez et al.
Source: check_circle
Crossref

Integrative modeling of the HIV-1 ribonucleoprotein complex

PLOS Computational Biology
2019-06-13 | Journal article
Contributors: David S. Goodsell; James M. Briggs; Andrew Jewett; Arthur J. Olson; Stefano Forli
Source: check_circle
Crossref

Lattice Models of Bacterial Nucleoids

The Journal of Physical Chemistry B
2018-05-31 | Journal article
Contributors: David S. Goodsell; Ludovic Autin; Arthur J. Olson
Source: check_circle
Crossref

Atomic Evidence: Seeing the Molecular Basis of Life

Source: Self-asserted source
David S. Goodsell

The Machinery of Life

Source: Self-asserted source
David S. Goodsell

Bionanotechnology: Lessons from Nature

Source: Self-asserted source
David S. Goodsell

Our Molecular Nature

Source: Self-asserted source
David S. Goodsell

The Molecule of the Month

RCSB Protein Data Bank
Interactive resource
Contributors: David S. Goodsell
Source: Self-asserted source
David S. Goodsell

Peer review (5 reviews for 2 publications/grants)

Review activity for ACS omega. (1)
Review activity for Journal of chemical information and modeling. (4)