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Employment (1)

National Center for Biotechnology Information: Bethesda, Maryland, US

Employment
Source: Self-asserted source
Benjamin D. Lee

Education and qualifications (2)

University of Oxford: Oxford, Oxfordshire, GB

2020-10 to present | DPhil
Education
Source: Self-asserted source
Benjamin D. Lee

Harvard College: Cambridge, MA, US

2016-08 to 2020-06 | A.B. (Computer Science)
Education
Source: Self-asserted source
Benjamin D. Lee

Works (9)

Ambiviricota , a novel ribovirian phylum for viruses with viroid-like properties

Journal of Virology
2024-07-23 | Journal article
DOI: 10.1128/jvi.00831-24
Contributors: Jens H. Kuhn; Leticia Botella; Marcos de la Peña; Eeva J. Vainio; Mart Krupovic; Benjamin D. Lee; Beatriz Navarro; Sead Sabanadzovic; Peter Simmonds; Massimo Turina et al.
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Crossref

Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum

Applied Soil Ecology
2023-10 | Journal article
DOI: 10.1016/j.apsoil.2023.105018
Contributors: Lucas P.P. Braga; Andrew J. Tanentzap; Benjamin Lee; Siu Mui Tsai; Jos M. Raaijmakers; Rodrigo Mendes; Lucas W. Mendes
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Crossref

Ten quick tips for deep learning in biology

PLOS Computational Biology
2022-03-24 | Journal article
DOI: 10.1371/journal.pcbi.1009803
Contributors: Benjamin D. Lee; Francis Ouellette; Anthony Gitter; Casey S. Greene; Sebastian Raschka; Finlay Maguire; Alexander J. Titus; Michael D. Kessler; Alexandra J. Lee; Marc G. Chevrette et al.
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Crossref

A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages

2022-02-17 | Preprint
DOI: 10.1101/2022.02.15.480533
Contributors: Uri Neri; Yuri I. Wolf; Simon Roux; Antonio Pedro Camargo; Benjamin Lee; Darius Kazlauskas; I. Min Chen; Natalia Ivanova; Lisa Zeigler Allen; David Paez-Espino et al.
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Crossref

ViroidDB: a database of viroids and viroid-like circular RNAs

Nucleic Acids Research
2022-01-07 | Journal article
DOI: 10.1093/nar/gkab974
Contributors: Benjamin D Lee; Uri Neri; Caleb J Oh; Peter Simmonds; Eugene V Koonin
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Crossref

DNAvisualization.org: a serverless web tool for DNA sequence visualization

Nucleic Acids Research
2019-07-02 | Journal article
DOI: 10.1093/nar/gkz404
Contributors: Benjamin D Lee; Michael A Timony; Pablo Ruiz
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Crossref

Squiggle: a user-friendly two-dimensional DNA sequence visualization tool

Bioinformatics
2019-04-15 | Journal article
DOI: 10.1093/bioinformatics/bty807
Contributors: Benjamin D Lee; John Hancock
Source: check_circle
Crossref

Ten simple rules for documenting scientific software

PLOS Computational Biology
2018-12-20 | Journal article
DOI: 10.1371/journal.pcbi.1006561
Contributors: Benjamin D. Lee; Scott Markel
Source: check_circle
Crossref

Python Implementation of Codon Adaptation Index

Journal of Open Source Software
2018-10-03 | Journal article
DOI: 10.21105/joss.00905
Contributors: Benjamin D. Lee
Source: check_circle
Crossref

Peer review (4 reviews for 2 publications/grants)

Review activity for PLoS computational biology. (3)
Review activity for The ISME journal (1)
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