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Scopus Author ID: 57194498430

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Machine Learning, Medicine

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Employment (6)

Oulun yliopisto: Oulu, Pohjois-Pohjanmaa, FI

2022-01-01 to present | Assistant Professor (Research Unit of Medical Imaging, Physics and Technology)
Employment
Source: Self-asserted source
Aleksei Tiulpin

Aalto-yliopisto: Espoo, FI

2021-03-01 to 2021-12-01 | Post-doctoral fellow (Computer Science)
Employment
Source: Self-asserted source
Aleksei Tiulpin

KU Leuven: Leuven, BE

2020-08-01 to 2021-02-28 | Post-doctoral fellow (Department of Electrical Engineering)
Employment
Source: Self-asserted source
Aleksei Tiulpin

University of Oulu: Oulu, FI

2020-03-09 to 2020-08-05 | Post-doctoral fellow (Research Unit of Medical Imaging, Physics and technology)
Employment
Source: Self-asserted source
Aleksei Tiulpin

Oulu University Hospital: Oulu, FI

2019-01-01 to 2020-08-01 | AI integration engineer (Department of Radiology)
Employment
Source: Self-asserted source
Aleksei Tiulpin

University of Oulu: Oulu, FI

2015-08 to 2020-03-09 | Researcher/doctoral student (Research unit of Medical Imaging, Physics and Technology)
Employment
Source: Self-asserted source
Aleksei Tiulpin

Education and qualifications (3)

University of Oulu: Oulu, FI

2022-02-01 to present | Title of docent (Faculty of Medicine)
Qualification
Source: Self-asserted source
Aleksei Tiulpin

University of Oulu: Oulu, FI

2017-02-01 to 2020-04-08 | Doctor of Philosophy (Research Unit of Medical Imaging, Physics and Technology)
Education
Source: Self-asserted source
Aleksei Tiulpin

Northern (Arctic) Federal University named after M.V. Lomonosov: Arkhangelsk, RU

2010-09-01 to 2015-06-30 | Specialist degree in applied mathematics and informatics (Applied mathematics and high performance computing)
Education
Source: Self-asserted source
Aleksei Tiulpin

Works (44)

LoG-VMamba : Local-Global Vision Mamba for Medical Image Segmentation

2025 | Book chapter
DOI: 10.1007/978-981-96-0901-7_14
Contributors: Trung DQ. Dang; Huy Hoang Nguyen; Aleksei Tiulpin
Source: check_circle
Crossref

Robust radiomic signatures of intervertebral disc degeneration from MRI

2025-04-01 | Preprint
DOI: 10.1101/2025.04.01.25325008
Contributors: Terence McSweeney; Aleksei Tiulpin; Narasimharao Kowlagi; Juhani Määttä; Jaro Karppinen; Simo Saarakkala
Source: check_circle
Crossref

SiNGR: Brain Tumor Segmentation via Signed Normalized Geodesic Transform Regression

2024 | Book chapter
DOI: 10.1007/978-3-031-72114-4_57
Contributors: Trung Dang; Huy Hoang Nguyen; Aleksei Tiulpin
Source: check_circle
Crossref

Clinical Super-Resolution Computed Tomography of Bone Microstructure: Application in Musculoskeletal and Dental Imaging

Annals of Biomedical Engineering
2024-05 | Journal article
DOI: 10.1007/s10439-024-03450-y
Contributors: Santeri J. O. Rytky; Aleksei Tiulpin; Mikko A. J. Finnilä; Sakari S. Karhula; Annina Sipola; Väinö Kurttila; Maarit Valkealahti; Petri Lehenkari; Antti Joukainen; Heikki Kröger et al.
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Clinically-Inspired Multi-Agent Transformers for Disease Trajectory Forecasting From Multimodal Data

IEEE Transactions on Medical Imaging
2024-01 | Journal article
DOI: 10.1109/TMI.2023.3312524
Contributors: Huy Hoang Nguyen; Matthew B. Blaschko; Simo Saarakkala; Aleksei Tiulpin
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Beyond Classification: Definition and Density-based Estimation of Calibration in Object Detection

arXiv
2023 | Other
DOI: 10.48550/arXiv.2312.06645
EID:

2-s2.0-85180756908

Part of ISSN: 23318422
Contributors: Popordanoska, T.; Tiulpin, A.; Blaschko, M.B.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Consistent and Asymptotically Unbiased Estimation of Proper Calibration Errors

arXiv
2023 | Other
DOI: 10.48550/arXiv.2312.08589
EID:

2-s2.0-85180325665

Part of ISSN: 23318422
Contributors: Popordanoska, T.; Gruber, S.G.; Tiulpin, A.; Buettner, F.; Blaschko, M.B.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

End-To-End Prediction of Knee Osteoarthritis Progression With Multi-Modal Transformers

arXiv
2023 | Other
EID:

2-s2.0-85165603315

Part of ISSN: 23318422
Contributors: Panfilov, E.; Saarakkala, S.; Nieminen, M.T.; Tiulpin, A.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966

Spine
2023 | Journal article
DOI: 10.1097/BRS.0000000000004572
EID:

2-s2.0-85150215291

Part of ISSN: 15281159 03622436
Contributors: McSweeney, T.P.; Tiulpin, A.; Saarakkala, S.; Niinimäki, J.; Windsor, R.; Jamaludin, A.; Kadir, T.; Karppinen, J.; Määttä, J.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

MRI2Mesh: Intervertebral Disc Mesh Generation from Low Resolution MRI Using Graph Neural Networks with Cross Level Feature Fusion

Proceedings - International Symposium on Biomedical Imaging
2023 | Conference paper
DOI: 10.1109/ISBI53787.2023.10230651
EID:

2-s2.0-85172153882

ISBN: 9781665473583
Part of ISSN: 19458452 19457928
Contributors: Natarajan, S.; Tiulpin, A.; Humbert, L.; Ballester, M.A.G.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Quantification of Upper Limb Movements in Patients with Hereditary or Idiopathic Ataxia

Cerebellum
2023 | Journal article
DOI: 10.1007/s12311-022-01485-2
EID:

2-s2.0-85140333466

Part of ISSN: 14734230 14734222
Contributors: Lipponen, J.; Tiulpin, A.; Majamaa, K.; Rusanen, H.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

The KNee OsteoArthritis Prediction (KNOAP2020) challenge: An image analysis challenge to predict incident symptomatic radiographic knee osteoarthritis from MRI and X-ray images

Osteoarthritis and Cartilage
2023 | Journal article
DOI: 10.1016/j.joca.2022.10.001
EID:

2-s2.0-85141304643

Part of ISSN: 15229653 10634584
Contributors: Hirvasniemi, J.; Runhaar, J.; van der Heijden, R.A.; Zokaeinikoo, M.; Yang, M.; Li, X.; Tan, J.; Rajamohan, H.R.; Zhou, Y.; Deniz, C.M. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

AdaTriplet: Adaptive Gradient Triplet Loss with Automatic Margin Learning for Forensic Medical Image Matching

arXiv
2022 | Other
DOI: 10.48550/arxiv.2205.02849
EID:

2-s2.0-85170588840

Part of ISSN: 23318422
Contributors: Nguyen, K.; Nguyen, H.H.; Tiulpin, A.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

AdaTriplet: Adaptive Gradient Triplet Loss with Automatic Margin Learning for Forensic Medical Image Matching

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2022 | Conference paper
DOI: 10.1007/978-3-031-16452-1_69
EID:

2-s2.0-85139077467

ISBN: 9783031164514
Part of ISSN: 16113349 03029743
Contributors: Nguyen, K.; Nguyen, H.H.; Tiulpin, A.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Deep learning-based segmentation of knee MRI for fully automatic subregional morphological assessment of cartilage tissues: Data from the Osteoarthritis Initiative

Journal of Orthopaedic Research
2022 | Journal article
DOI: 10.1002/jor.25150
EID:

2-s2.0-85112661446

Part of ISSN: 1554527X 07360266
Contributors: Panfilov, E.; Tiulpin, A.; Nieminen, M.T.; Saarakkala, S.; Casula, V.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

On confidence intervals for precision matrices and the eigendecomposition of covariance matrices

arXiv
2022 | Other
DOI: 10.48550/arXiv.2208.11977
EID:

2-s2.0-85137013850

Part of ISSN: 23318422
Contributors: Popordanoska, T.; Tiulpin, A.; Bounliphone, W.; Blaschko, M.B.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Outcome and biomarker supervised deep learning for survival prediction in two multicenter breast cancer series

Journal of Pathology Informatics
2022 | Journal article
DOI: 10.4103/jpi.jpi_29_21
EID:

2-s2.0-85124652000

Part of ISSN: 21533539 22295089
Contributors: Bychkov, D.; Joensuu, H.; Nordling, S.; Tiulpin, A.; Kücükel, H.; Lundin, M.; Sihto, H.; Isola, J.; Lehtimäki, T.; Kellokumpu-Lehtinen, P.-L. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Predicting Knee Osteoarthritis Progression from Structural MRI Using Deep Learning

Proceedings - International Symposium on Biomedical Imaging
2022 | Conference paper
DOI: 10.1109/ISBI52829.2022.9761458
EID:

2-s2.0-85129615570

ISBN: 9781665429238
Part of ISSN: 19458452 19457928
Contributors: Panfilov, E.; Saarakkala, S.; Nieminen, M.T.; Tiulpin, A.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Predicting total knee arthroplasty from ultrasonography using machine learning

Osteoarthritis and Cartilage Open
2022 | Journal article
DOI: 10.1016/j.ocarto.2022.100319
EID:

2-s2.0-85162512729

Part of ISSN: 26659131
Contributors: Tiulpin, A.; Saarakkala, S.; Mathiessen, A.; Hammer, H.B.; Furnes, O.; Nordsletten, L.; Englund, M.; Magnusson, K.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Acoustic emissions and kinematic instability of the osteoarthritic knee joint: comparison with radiographic findings

Scientific Reports
2021 | Journal article
DOI: 10.1038/s41598-021-98945-2
EID:

2-s2.0-85116378752

Part of ISSN: 20452322
Contributors: Nevalainen, M.T.; Veikkola, O.; Thevenot, J.; Tiulpin, A.; Hirvasniemi, J.; Niinimäki, J.; Saarakkala, S.S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Common Limitations of Image Processing Metrics: A Picture Story

arXiv
2021 | Other
DOI: 10.48550/arXiv.2104.05642
EID:

2-s2.0-85173385341

Part of ISSN: 23318422
Contributors: Reinke, A.; Tizabi, M.D.; Sudre, C.H.; Eisenmann, M.; Rädsch, T.; Baumgartner, M.; Acion, L.; Antonelli, M.; Arbel, T.; Bakas, S. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Critical evaluation of deep neural networks for wrist fracture detection

Scientific Reports
2021 | Journal article
DOI: 10.1038/s41598-021-85570-2
EID:

2-s2.0-85102677121

Part of ISSN: 20452322
Contributors: Raisuddin, A.M.; Vaattovaara, E.; Nevalainen, M.; Nikki, M.; Järvenpää, E.; Makkonen, K.; Pinola, P.; Palsio, T.; Niemensivu, A.; Tervonen, O. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Deep learning identifies morphological features in breast cancer predictive of cancer ERBB2 status and trastuzumab treatment efficacy

Scientific Reports
2021 | Journal article
DOI: 10.1038/s41598-021-83102-6
EID:

2-s2.0-85101164086

Part of ISSN: 20452322
Contributors: Bychkov, D.; Linder, N.; Tiulpin, A.; Kücükel, H.; Lundin, M.; Nordling, S.; Sihto, H.; Isola, J.; Lehtimäki, T.; Kellokumpu-Lehtinen, P.-L. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Greedy Bayesian Posterior Approximation with Deep Ensembles

arXiv
2021 | Other
DOI: 10.48550/arXiv.2105.14275
EID:

2-s2.0-85135853815

Part of ISSN: 23318422
Contributors: Tiulpin, A.; Blaschko, M.B.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Targeted active learning for Bayesian decision-making

arXiv
2021 | Other
DOI: 10.48550/arxiv.2106.04193
EID:

2-s2.0-85170613907

Part of ISSN: 23318422
Contributors: Filstroff, L.; Sundin, I.; Mikkola, P.; Tiulpin, A.; Kylmäoja, J.; Kaski, S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Automated analysis of rabbit knee calcified cartilage morphology using micro‐computed tomography and deep learning

Journal of Anatomy
2021-08 | Journal article
DOI: 10.1111/joa.13435
Contributors: Santeri J. O. Rytky; Lingwei Huang; Petri Tanska; Aleksei Tiulpin; Egor Panfilov; Walter Herzog; Rami K. Korhonen; Simo Saarakkala; Mikko A. J. Finnilä
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Automating three-dimensional osteoarthritis histopathological grading of human osteochondral tissue using machine learning on contrast-enhanced micro-computed tomography

Osteoarthritis and Cartilage
2020 | Journal article
DOI: 10.1016/j.joca.2020.05.002
EID:

2-s2.0-85085606890

Part of ISSN: 15229653 10634584
Contributors: Rytky, S.J.O.; Tiulpin, A.; Frondelius, T.; Finnilä, M.A.J.; Karhula, S.S.; Leino, J.; Pritzker, K.P.H.; Valkealahti, M.; Lehenkari, P.; Joukainen, A. et al.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Bayesian Feature Pyramid Networks for Automatic Multi-label Segmentation of Chest X-rays and Assessment of Cardio-Thoratic Ratio

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2020 | Book
DOI: 10.1007/978-3-030-40605-9_11
EID:

2-s2.0-85080867585
Contributors: Solovyev, R.; Melekhov, I.; Lesonen, T.; Vaattovaara, E.; Tervonen, O.; Tiulpin, A.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2020 | Conference paper
DOI: 10.1007/978-3-030-40605-9_12
EID:

2-s2.0-85080888133

ISBN: 9783030406042
Part of ISSN: 16113349 03029743
Contributors: Tiulpin, A.; Finnilä, M.; Lehenkari, P.; Nieminen, H.J.; Saarakkala, S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Detection of experimental cartilage damage with acoustic emissions technique: An in vitro equine study

Equine Veterinary Journal
2020 | Journal article
DOI: 10.1111/evj.13132
EID:

2-s2.0-85067350313
Contributors: Shakya, B.R.; Tiulpin, A.; Saarakkala, S.; Turunen, S.; Thevenot, J.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Semixup: In- and Out-of-Manifold Regularization for Deep Semi-Supervised Knee Osteoarthritis Severity Grading From Plain Radiographs

IEEE Transactions on Medical Imaging
2020-12 | Journal article
DOI: 10.1109/TMI.2020.3017007
Contributors: Huy Hoang Nguyen; Simo Saarakkala; Matthew B. Blaschko; Aleksei Tiulpin
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Automatic Grading of Individual Knee Osteoarthritis Features in Plain Radiographs Using Deep Convolutional Neural Networks

Diagnostics
2020-11-10 | Journal article
DOI: 10.3390/diagnostics10110932
Contributors: Aleksei Tiulpin; Simo Saarakkala
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Adaptive segmentation of knee radiographs for selecting the optimal ROI in texture analysis

Osteoarthritis and Cartilage
2020-07 | Journal article
DOI: 10.1016/j.joca.2020.03.006
Contributors: N. Bayramoglu; A. Tiulpin; J. Hirvasniemi; M.T. Nieminen; S. Saarakkala
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Development of osteoarthritis in patients with degenerative meniscal tears treated with exercise therapy or surgery: a randomized controlled trial

Osteoarthritis and Cartilage
2020-07 | Journal article
DOI: 10.1016/j.joca.2020.01.020
Contributors: B. Berg; E.M. Roos; M. Englund; N.J. Kise; A. Tiulpin; S. Saarakkala; L. Engebretsen; C.N. Eftang; I. Holm; M.A. Risberg
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Breast tumor cellularity assessment using deep neural networks

Proceedings - 2019 International Conference on Computer Vision Workshop, ICCVW 2019
2019 | Conference paper
DOI: 10.1109/ICCVW.2019.00048
EID:

2-s2.0-85081136808

ISBN: 9781728150239
Contributors: Rakhlin, A.; Tiulpin, A.; Shvets, A.A.; Kalinin, A.A.; Iglovikov, V.I.; Nikolenko, S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

DGC-Net: Dense geometric correspondence network

Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019
2019 | Conference paper
DOI: 10.1109/WACV.2019.00115
EID:

2-s2.0-85063572728
Contributors: Melekhov, I.; Tiulpin, A.; Sattler, T.; Pollefeys, M.; Rahtu, E.; Kannala, J.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data

Scientific Reports
2019-12-27 | Journal article
DOI: 10.1038/s41598-019-56527-3
Contributors: Aleksei Tiulpin; Stefan Klein; Sita M. A. Bierma-Zeinstra; Jérôme Thevenot; Esa Rahtu; Joyce van Meurs; Edwin H. G. Oei; Simo Saarakkala
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Gray Matter Age Prediction as a Biomarker for Risk of Dementia

Proceedings of the National Academy of Sciences
2019-10-15 | Journal article
DOI: 10.1073/pnas.1902376116
Contributors: Johnny Wang; Maria J. Knol; Aleksei Tiulpin; Florian Dubost; Marleen de Bruijne; Meike W. Vernooij; Hieab H. H. Adams; M. Arfan Ikram; Wiro J. Niessen; Gennady V. Roshchupkin
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Automating Three-dimensional Osteoarthritis Histopathological Grading of Human Osteochondral Tissue using Machine Learning on Contrast-Enhanced Micro-Computed Tomography

2019-07-26 | Other
DOI: 10.1101/713800
Contributors: S.J.O. Rytky; A. Tiulpin; T. Frondelius; M.A.J. Finnilä; S.S. Karhula; J. Leino; K.P.H. Pritzker; M. Valkealahti; P. Lehenkari; A. Joukainen et al.
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Breast Tumor Cellularity Assessment using Deep Neural Networks

2019-05-05 | Other
DOI: 10.1101/628693
Contributors: Alexander Rakhlin; Aleksei Tiulpin; Alexey A. Shvets; Alexandr A. Kalinin; Vladimir I. Iglovikov; Sergey Nikolenko
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Quantitative assessment of osteoarthritic knee instability: Comparison with conventional imaging modalities

IFMBE Proceedings
2018 | Conference paper
DOI: 10.1007/978-981-10-9038-7_130
EID:

2-s2.0-85048238292
Contributors: Virtanen, V.K.O.; Thevenot, J.; Tiulpin, A.; Hirvasniemi, J.; Niinimäki, J.; Nevalainen, M.; Saarakkala, S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Automatic Knee Osteoarthritis Diagnosis from Plain Radiographs: A Deep Learning-Based Approach

Scientific Reports
2018-01-29 | Journal article
DOI: 10.1038/s41598-018-20132-7
Contributors: Aleksei Tiulpin; Jérôme Thevenot; Esa Rahtu; Petri Lehenkari; Simo Saarakkala
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A novel method for automatic localization of joint area on knee plain radiographs

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2017 | Conference paper
DOI: 10.1007/978-3-319-59129-2_25
EID:

2-s2.0-85020426455

ISBN: 9783319591285
Part of ISSN: 16113349 03029743
Contributors: Tiulpin, A.; Thevenot, J.; Rahtu, E.; Saarakkala, S.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Evaluation of WAMP protocol in real-time remote ECG monitoring

IFMBE Proceedings
2017 | Conference paper
DOI: 10.1007/978-981-10-5122-7_7
EID:

2-s2.0-85021725568
Contributors: Aslam, M.A.; Tiulpin, A.; Noponen, K.; Seppänen, T.
Source: Self-asserted source
Aleksei Tiulpin via Scopus - Elsevier

Peer review (9 reviews for 3 publications/grants)

Review activity for European radiology. (5)
Review activity for Nature communications (3)
Review activity for Scientific data. (1)
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