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Education and qualifications (3)

University of Washington: Seattle, WA, US

2021-03-17 to present | Postdoctoral Fellow (Genome Sciences)
Qualification
Source: Self-asserted source
Mitchell R. Vollger

University of Washington: Seattle, WA, US

2016-09-15 to 2021-03-16 | PhD (Genome Sciences)
Education
Source: Self-asserted source
Mitchell R. Vollger

Princeton University: Princeton , NJ, US

2011-09-01 to 2015-06-01 | B.S.E. (Computer Science Engineering )
Education
Source: Self-asserted source
Mitchell R. Vollger

Works (36)

Genetic diversity and regulatory features of human-specificNOTCH2NLduplications

2025-03-16 | Preprint
DOI: 10.1101/2025.03.14.643395
Contributors: Taylor D. Real; Prajna Hebbar; DongAhn Yoo; Francesca Antonacci; Ivana Pačar; Mark Diekhans; Gregory J. Mikol; Oyeronke G. Popoola; Benjamin J. Mallory; Mitchell R. Vollger et al.
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Crossref

Integrating Single-Molecule Sequencing and Deep Learning to Predict Haplotype-Specific 3D Chromatin Organization in a Mendelian Condition

2025-03-02 | Preprint
DOI: 10.1101/2025.02.26.640261
Contributors: Danilo Dubocanin; Anna Kalygina; J. Matthew Franklin; Cy Chittenden; Mitchell R Vollger; Shane Neph; Andrew B Stergachis; Nicolas Altemose
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Crossref

Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition

Nature Genetics
2025-02 | Journal article
DOI: 10.1038/s41588-024-02067-0
Contributors: Mitchell R. Vollger; Jonas Korlach; Kiara C. Eldred; Elliott Swanson; Jason G. Underwood; Stephanie C. Bohaczuk; Yizi Mao; Yong-Han H. Cheng; Jane Ranchalis; Elizabeth E. Blue et al.
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Crossref

Resolving the chromatin impact of mosaic variants with targeted Fiber-seq

Genome Research
2024-12 | Journal article
DOI: 10.1101/gr.279747.124
Contributors: Stephanie C. Bohaczuk; Zachary J. Amador; Chang Li; Benjamin J. Mallory; Elliott G. Swanson; Jane Ranchalis; Mitchell R. Vollger; Katherine M. Munson; Tom Walsh; Morgan O. Hamm et al.
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Crossref

Deaminase-assisted single-molecule and single-cell chromatin fiber sequencing

2024-11-06 | Preprint
DOI: 10.1101/2024.11.06.622310
Contributors: Elliott G. Swanson; Yizi Mao; Benjamin J. Mallory; Mitchell R. Vollger; Jane Ranchalis; Stephanie C. Bohaczuk; Nancy L. Parmalee; James T. Bennett; Andrew B. Stergachis
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Crossref

The regulatory potential of transposable elements in maize

2024-07-14 | Preprint
DOI: 10.1101/2024.07.10.602892
Contributors: Kerry L. Bubb; Morgan O. Hamm; Thomas W. Tullius; Joseph K. Min; Bryan Ramirez-Corona; Nicholas A. Mueth; Jane Ranchalis; Yizi Mao; Erik J. Bergstrom; Mitchell R. Vollger et al.
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Crossref

Resolving the chromatin impact of mosaic variants with targeted Fiber-seq

2024-07-13 | Preprint
DOI: 10.1101/2024.07.09.602608
Contributors: Stephanie C. Bohaczuk; Zachary J. Amador; Chang Li; Benjamin J. Mallory; Elliott G Swanson; Jane Ranchalis; Mitchell R. Vollger; Katherine M. Munson; Tom Walsh; Morgan O. Hamm et al.
Source: check_circle
Crossref

A haplotype-resolved view of human gene regulation

2024-06-16 | Preprint
DOI: 10.1101/2024.06.14.599122
Contributors: Mitchell R. Vollger; Elliott G. Swanson; Shane J. Neph; Jane Ranchalis; Katherine M. Munson; Ching-Huang Ho; Adriana E. Sedeño-Cortés; William E. Fondrie; Stephanie C. Bohaczuk; Yizi Mao et al.
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Crossref

DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools

Genome Research
2024-06-07 | Journal article | Author
DOI: 10.1101/gr.279095.124
Part of ISSN: 1088-9051
Contributors: Anupama Jha; Stephanie C. Bohaczuk; Yizi Mao; Jane Ranchalis; Benjamin J. Mallory; Alan T. Min; Morgan O Hamm; Elliott Swanson; Danilo Dubocanin; Connor Finkbeiner et al.
Source: Self-asserted source
Mitchell R. Vollger

Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition

2023-09-27 | Preprint
DOI: 10.1101/2023.09.26.559521
Contributors: Mitchell R. Vollger; Jonas Korlach; Kiara C. Eldred; Elliott Swanson; Jason G. Underwood; Yong-Han H. Cheng; Jane Ranchalis; Yizi Mao; Elizabeth E. Blue; Ulrike Schwarze et al.
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Crossref

A draft human pangenome reference

Nature
2023-05-11 | Journal article | Author
DOI: 10.1038/s41586-023-05896-x
DOI: 10.1101/2022.07.09.499321
Part of ISSN: 0028-0836
Part of ISSN: 1476-4687
Contributors: Wen-Wei Liao; Mobin Asri; Jana Ebler; Daniel Doerr; Marina Haukness; Glenn Hickey; Shuangjia Lu; Julian K. Lucas; Jean Monlong; Haley J. Abel et al.
Source: Self-asserted source
Mitchell R. Vollger
grade
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Increased mutation and gene conversion within human segmental duplications

Nature
2023-05-11 | Journal article
DOI: 10.1038/s41586-023-05895-y
Contributors: Mitchell R. Vollger; Philip C. Dishuck; William T. Harvey; William S. DeWitt; Xavi Guitart; Michael E. Goldberg; Allison N. Rozanski; Julian Lucas; Mobin Asri; Haley J. Abel et al.
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mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra

Journal of Open Source Software
2023-05-10 | Journal article
DOI: 10.21105/joss.05227
Contributors: William S. DeWitt; Luke Zhu; Mitchell R. Vollger; Michael E. Goldberg; Andrea Talenti; Annabel C. Beichman; Kelley Harris
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Crossref

Gaps and complex structurally variant loci in phased genome assemblies

Genome Research
2023-04 | Journal article
DOI: 10.1101/gr.277334.122
Contributors: David Porubsky; Mitchell R. Vollger; William T. Harvey; Allison N. Rozanski; Peter Ebert; Glenn Hickey; Patrick Hasenfeld; Ashley D. Sanders; Catherine Stober; Jan O. Korbel et al.
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Crossref
grade
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A refined characterization of large-scale genomic differences in the first complete human genome

2022-12-19 | Preprint
DOI: 10.1101/2022.12.17.520860
Contributors: Xiangyu Yang; Xuankai Wang; Yawen Zou; Shilong Zhang; Manying Xia; Mitchell R. Vollger; Nae-Chyun Chen; Dylan J. Taylor; William T. Harvey; Glennis A. Logsdon et al.
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Crossref

Semi-automated assembly of high-quality diploid human reference genomes

Nature
2022-11-17 | Journal article
DOI: 10.1038/s41586-022-05325-5
Contributors: Erich D. Jarvis; Giulio Formenti; Arang Rhie; Andrea Guarracino; Chentao Yang; Jonathan Wood; Alan Tracey; Francoise Thibaud-Nissen; Mitchell R. Vollger; David Porubsky et al.
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Crossref
grade
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A complete reference genome improves analysis of human genetic variation

Science
2022-04 | Journal article
DOI: 10.1126/science.abl3533
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger

Complete genomic and epigenetic maps of human centromeres

Science
2022-04 | Journal article
DOI: 10.1126/science.abl4178
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger

Epigenetic patterns in a complete human genome

Science
2022-04 | Journal article
DOI: 10.1126/science.abj5089
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 2)‎

From telomere to telomere: The transcriptional and epigenetic state of human repeat elements

Science
2022-04 | Journal article
DOI: 10.1126/science.abk3112
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger

Segmental duplications and their variation in a complete human genome

Science
2022-04 | Journal article
DOI: 10.1126/science.abj6965
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 2)‎

The complete sequence of a human genome

Science
2022-04 | Journal article
DOI: 10.1126/science.abj6987
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 2)‎

StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps

Bioinformatics
2022-01-10 | Journal article
DOI: 10.1101/2021.08.19.457003
DOI: 10.1093/bioinformatics/btac018
Part of ISSN: 1367-4803
Part of ISSN: 1460-2059
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 4)‎

Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans

Nature Communications
2021-12 | Journal article
DOI: 10.1038/s41467-021-25435-4
Part of ISSN: 2041-1723
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 2)‎

The structure, function and evolution of a complete human chromosome 8

Nature
2021-05-06 | Journal article
DOI: 10.1038/s41586-021-03420-7
Contributors: Glennis A. Logsdon; Mitchell R. Vollger; PingHsun Hsieh; Yafei Mao; Mikhail A. Liskovykh; Sergey Koren; Sergey Nurk; Ludovica Mercuri; Philip C. Dishuck; Arang Rhie et al.
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grade
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Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nature Biotechnology
2021-03-07 | Journal article
DOI: 10.1038/s41587-020-0719-5
Contributors: David Porubsky; Peter Ebert; Peter A. Audano; Mitchell R. Vollger; William T. Harvey; Pierre Marijon; Jana Ebler; Katherine M. Munson; Melanie Sorensen; Arvis Sulovari et al.
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Crossref

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

Science
2020-12-18 | Journal article
DOI: 10.1126/science.abc6617
Part of ISSN: 0036-8075
Part of ISSN: 1095-9203
Source: Self-asserted source
Mitchell R. Vollger

Long-read human genome sequencing and its applications

Nature Reviews Genetics
2020-10-05 | Journal article
DOI: 10.1038/s41576-020-0236-x
Contributors: Glennis A. Logsdon; Mitchell R. Vollger; Evan E. Eichler
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Crossref

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology
2020-09 | Journal article
DOI: 10.1038/s41587-020-0503-6
Part of ISSN: 1087-0156
Part of ISSN: 1546-1696
Source: Self-asserted source
Mitchell R. Vollger

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Genome Research
2020-09-14 | Journal article
DOI: 10.1101/gr.263566.120
Contributors: Sergey Nurk; Brian P. Walenz; Arang Rhie; Mitchell R. Vollger; Glennis A. Logsdon; Robert Grothe; Karen H. Miga; Evan E. Eichler; Adam M. Phillippy; Sergey Koren
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Telomere-to-telomere assembly of a complete human X chromosome

Nature
2020-09-03 | Journal article
DOI: 10.1038/s41586-020-2547-7
Contributors: Karen H. Miga; Sergey Koren; Arang Rhie; Mitchell R. Vollger; Ariel Gershman; Andrey Bzikadze; Shelise Brooks; Edmund Howe; David Porubsky; Glennis A. Logsdon et al.
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Crossref
grade
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Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads

Annals of Human Genetics
2020-03 | Journal article
DOI: 10.1111/ahg.12364
Contributors: Mitchell R. Vollger; Glennis A. Logsdon; Peter A. Audano; Arvis Sulovari; David Porubsky; Paul Peluso; Aaron M. Wenger; Gregory T. Concepcion; Zev N. Kronenberg; Katherine M. Munson et al.
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Human-specific tandem repeat expansion and differential gene expression during primate evolution

Proceedings of the National Academy of Sciences
2019-11-12 | Journal article
DOI: 10.1073/pnas.1912175116
Part of ISSN: 0027-8424
Part of ISSN: 1091-6490
Source: Self-asserted source
Mitchell R. Vollger

Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes

Science
2019-10-18 | Journal article
DOI: 10.1126/science.aax2083
Contributors: PingHsun Hsieh; Mitchell R. Vollger; Vy Dang; David Porubsky; Carl Baker; Stuart Cantsilieris; Kendra Hoekzema; Alexandra P. Lewis; Katherine M. Munson; Melanie Sorensen et al.
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Crossref

Genomic inversions and GOLGA core duplicons underlie disease instability at the 15q25 locus

PLOS Genetics
2019-03-27 | Journal article
DOI: 10.1371/journal.pgen.1008075
Part of ISSN: 1553-7404
Source: Self-asserted source
Mitchell R. Vollger
grade
Preferred source (of 2)‎

Long-read sequence and assembly of segmental duplications

Nature Methods
2019-01-17 | Journal article
DOI: 10.1038/s41592-018-0236-3
Contributors: Mitchell R. Vollger; Philip C. Dishuck; Melanie Sorensen; AnneMarie E. Welch; Vy Dang; Max L. Dougherty; Tina A. Graves-Lindsay; Richard K. Wilson; Mark J. P. Chaisson; Evan E. Eichler
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Peer review (2 reviews for 1 publication/grant)

Review activity for Genome biology. (2)
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