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University of Zurich: Zurich, ZH, CH

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University of Zurich

University of Zurich: Zurich, ZH, CH

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University of Zurich

University of Zurich: Zurich, ZH, CH

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University of Zurich

University of Zurich: Zurich, ZH, CH

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University of Zurich

University of Zurich: Zurich, ZH, CH

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University of Zurich

Works (50 of 113)

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Page 1 of 3

A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation

IEEE transactions on pattern analysis and machine intelligence
2024 | Journal article
Contributors: Fidon, Lucas; Aertsen, Michael; Kofler, Florian; Bink, Andrea; David, Anna L; Deprest, Thomas; Emam, Doaa; Guffens, Frédéric; Jakab, András; Kasprian, Gregor et al.
Source: Self-asserted source
Florian

A Learnable Prior Improves Inverse Tumor Growth Modeling

arXiv preprint arXiv:2403.04500
2024 | Journal article
Contributors: Weidner, Jonas; Ezhov, Ivan; Balcerak, Michal; Metz, Marie-Christin; Litvinov, Sergey; Kaltenbach, Sebastian; Feiner, Leonhard; Lux, Laurin; Kofler, Florian; Lipkova, Jana et al.
Source: Self-asserted source
Florian

A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation

Scientific Data
2024 | Journal article
Contributors: LaBella, Dominic; Khanna, Omaditya; McBurney-Lin, Shan; Mclean, Ryan; Nedelec, Pierre; Rashid, Arif S; Tahon, Nourel Hoda; Altes, Talissa; Baid, Ujjwal; Bhalerao, Radhika et al.
Source: Self-asserted source
Florian

A robust ensemble algorithm for ischemic stroke lesion segmentation: Generalizability and clinical utility beyond the isles challenge

arXiv preprint arXiv:2403.19425
2024 | Journal article
Contributors: de la Rosa, Ezequiel; Reyes, Mauricio; Liew, Sook-Lei; Hutton, Alexandre; Wiest, Roland; Kaesmacher, Johannes; Hanning, Uta; Hakim, Arsany; Zubal, Richard; Valenzuela, Waldo et al.
Source: Self-asserted source
Florian

AI-assisted diagnostics in dentistry: An eye-tracking study on user behavior

Journal of Clinical and Experimental Dentistry
2024 | Journal article
Contributors: Winterhalter, Laura; Kofler, Florian; Ströbele, Dragan-Alexander; Othman, Ahmed; von See, Constantin
Source: Self-asserted source
Florian

AI-Powered Identification of Osteoporosis in Dental Panoramic Radiographs: Addressing Methodological Flaws in Current Research

Diagnostics
2024 | Journal article
Contributors: Gaudin, Robert; Vinayahalingam, Shankeeth; van Nistelrooij, Niels; Ghanad, Iman; Otto, Wolfus; Kewenig, Stephan; Rendenbach, Carsten; Alevizakos, Vasilios; Grün, Pascal; Kofler, Florian et al.
Source: Self-asserted source
Florian

Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge

arXiv preprint arXiv:2405.09787
2024 | Journal article
Contributors: LaBella, Dominic; Baid, Ujjwal; Khanna, Omaditya; McBurney-Lin, Shan; McLean, Ryan; Nedelec, Pierre; Rashid, Arif; Tahon, Nourel Hoda; Altes, Talissa; Bhalerao, Radhika et al.
Source: Self-asserted source
Florian

Benchmarking the cow with the topcow challenge: Topology-aware anatomical segmentation of the circle of willis for cta and mra

ArXiv
2024 | Journal article
Contributors: Yang, Kaiyuan; Musio, Fabio; Ma, Yihui; Juchler, Norman; Paetzold, Johannes C; Al-Maskari, Rami; Höher, Luciano; Li, Hongwei Bran; Hamamci, Ibrahim Ethem; Sekuboyina, Anjany et al.
Source: Self-asserted source
Florian

Brain tumor segmentation (brats) challenge 2024: Meningioma radiotherapy planning automated segmentation

arXiv preprint arXiv:2405.18383
2024 | Journal article
Contributors: LaBella, Dominic; Schumacher, Katherine; Mix, Michael; Leu, Kevin; McBurney-Lin, Shan; Nedelec, Pierre; Villanueva-Meyer, Javier; Shapey, Jonathan; Vercauteren, Tom; Chia, Kazumi et al.
Source: Self-asserted source
Florian

BraTS-PEDs: results of the multi-consortium international pediatric brain tumor segmentation challenge 2023

arXiv preprint arXiv:2407.08855
2024 | Journal article
Contributors: Kazerooni, Anahita Fathi; Khalili, Nastaran; Liu, Xinyang; Haldar, Debanjan; Jiang, Zhifan; Zapaishchykova, Anna; Pavaine, Julija; Shah, Lubdha M; Jones, Blaise V; Sheth, Nakul et al.
Source: Self-asserted source
Florian

Deep Learning and 3D Imaging Reveal Whole-Body Alterations in Obesity

bioRxiv
2024 | Journal article
Contributors: Kaltenecker, Doris; Horvath, Izabela; Al-Maskari, Rami; Kolabas, Zeynep Ilgin; Chen, Ying; Hoeher, Luciano; Todorov, Mihail; Kapoor, Saketh; Ali, Mayar; Kofler, Florian et al.
Source: Self-asserted source
Florian

Denoising diffusion models for 3d healthy brain tissue inpainting

MICCAI Workshop on Deep Generative Models
2024 | Conference paper
Contributors: Durrer, Alicia; Wolleb, Julia; Bieder, Florentin; Friedrich, Paul; Melie-Garcia, Lester; Ocampo Pineda, Mario Alberto; Bercea, Cosmin I; Hamamci, Ibrahim Ethem; Wiestler, Benedikt; Piraud, Marie et al.
Source: Self-asserted source
Florian

Enhanced Osteoporosis Detection Using Artificial Intelligence: A Deep Learning Approach to Panoramic Radiographs with an Emphasis on the Mental Foramen

Medical Sciences
2024 | Journal article
Contributors: Gaudin, Robert; Otto, Wolfram; Ghanad, Iman; Kewenig, Stephan; Rendenbach, Carsten; Alevizakos, Vasilios; Grün, Pascal; Kofler, Florian; Heiland, Max; von See, Constantin
Source: Self-asserted source
Florian

Improving the Precision of CNNs for Magnetic Resonance Spectral Modeling

arXiv preprint arXiv:2409.06609
2024 | Journal article
Contributors: LaMaster, John; Das, Dhritiman; Kofler, Florian; Crane, Jason; Li, Yan; Lasser, Tobias; Menze, Bjoern H
Source: Self-asserted source
Florian

ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data

arXiv preprint arXiv:2408.10966
2024 | Journal article
Contributors: de la Rosa, Ezequiel; Su, Ruisheng; Reyes, Mauricio; Wiest, Roland; Riedel, Evamaria O; Kofler, Florian; Yang, Kaiyuan; Baazaoui, Hakim; Robben, David; Wegener, Susanne et al.
Source: Self-asserted source
Florian

Learnable real-time inference of molecular composition from diffuse spectroscopy of brain tissue

Journal of Biomedical Optics
2024 | Journal article
Contributors: Ezhov, Ivan; Scibilia, Kevin; Giannoni, Luca; Kofler, Florian; Iliash, Ivan; Hsieh, Felix; Shit, Suprosanna; Caredda, Charly; Lange, Frédéric; Montcel, Bruno et al.
Source: Self-asserted source
Florian

LST-AI: A deep learning ensemble for accurate MS lesion segmentation

NeuroImage: Clinical
2024 | Journal article
Contributors: Wiltgen, Tun; McGinnis, Julian; Schlaeger, Sarah; Kofler, Florian; Voon, CuiCi; Berthele, Achim; Bischl, Daria; Grundl, Lioba; Will, Nikolaus; Metz, Marie et al.
Source: Self-asserted source
Florian

Metrics reloaded: recommendations for image analysis validation

Nature methods
2024 | Journal article
Contributors: Maier-Hein, Lena; Reinke, Annika; Godau, Patrick; Tizabi, Minu D; Buettner, Florian; Christodoulou, Evangelia; Glocker, Ben; Isensee, Fabian; Kleesiek, Jens; Kozubek, Michal et al.
Source: Self-asserted source
Florian

MultiOrg: A Multi-rater Organoid-detection Dataset

arXiv preprint arXiv:2410.14612
2024 | Journal article
Contributors: Bukas, Christina; Subramanian, Harshavardhan; See, Fenja; Steinchen, Carina; Ezhov, Ivan; Boosarpu, Gowtham; Asgharpour, Sara; Burgstaller, Gerald; Lehmann, Mareike; Kofler, Florian et al.
Source: Self-asserted source
Florian

P10. 02. AA NOVEL APPROACH CONCERNING MEDICAL EDUCATION ON AI AND ML THROUGH THE ASNR MICCAI BRATS 2023 BRAIN METASTASES CHALLENGE

Neuro-Oncology
2024 | Journal article
Contributors: Janas, A; Gkampenis, A; Yordanov, N; Fehringer, P; Krantchev, K; Moawad, AW; Baid, U; Link, KE; Velichko, YS; LaBella, D et al.
Source: Self-asserted source
Florian

QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge

arXiv preprint arXiv:2405.18435
2024 | Journal article
Contributors: Li, Hongwei Bran; Navarro, Fernando; Ezhov, Ivan; Bayat, Amirhossein; Das, Dhritiman; Kofler, Florian; Shit, Suprosanna; Waldmannstetter, Diana; Paetzold, Johannes C; Hu, Xiaobin et al.
Source: Self-asserted source
Florian

Radiomics-based prediction of local control in patients with brain metastases following postoperative stereotactic radiotherapy

Neuro-oncology
2024 | Journal article
Contributors: Buchner, Josef A; Kofler, Florian; Mayinger, Michael; Christ, Sebastian M; Brunner, Thomas B; Wittig, Andrea; Menze, Bjoern; Zimmer, Claus; Meyer, Bernhard; Guckenberger, Matthias et al.
Source: Self-asserted source
Florian

SPINEPS--Automatic Whole Spine Segmentation of T2-weighted MR images using a Two-Phase Approach to Multi-class Semantic and Instance Segmentation

arXiv preprint arXiv:2402.16368
2024 | Journal article
Contributors: Möller, Hendrik; Graf, Robert; Schmitt, Joachim; Keinert, Benjamin; Atad, Matan; Sekuboyina, Anjany; Streckenbach, Felix; Schön, Hanna; Kofler, Florian; Kroencke, Thomas et al.
Source: Self-asserted source
Florian

The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI

arXiv e-prints
2024 | Journal article
Contributors: Correia de Verdier, Maria; Saluja, Rachit; Gagnon, Louis; LaBella, Dominic; Baid, Ujjwall; Hoda Tahon, Nourel; Foltyn-Dumitru, Martha; Zhang, Jikai; Alafif, Maram; Baig, Saif et al.
Source: Self-asserted source
Florian

The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI

arXiv preprint arXiv:2405.18368
2024 | Journal article
Contributors: de Verdier, Maria Correia; Saluja, Rachit; Gagnon, Louis; LaBella, Dominic; Baid, Ujjwall; Tahon, Nourel Hoda; Foltyn-Dumitru, Martha; Zhang, Jikai; Alafif, Maram; Baig, Saif et al.
Source: Self-asserted source
Florian

The brain tumor segmentation (BraTS) challenge 2023: Brain MR image synthesis for tumor segmentation (BraSyn)

ArXiv
2024 | Journal article
Contributors: Li, Hongwei Bran; Conte, Gian Marco; Hu, Qingqiao; Anwar, Syed Muhammad; Kofler, Florian; Ezhov, Ivan; van Leemput, Koen; Piraud, Marie; Diaz, Maria; Cole, Byrone et al.
Source: Self-asserted source
Florian

The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)

ArXiv
2024 | Journal article
Contributors: Kazerooni, Anahita Fathi; Khalili, Nastaran; Liu, Xinyang; Haldar, Debanjan; Jiang, Zhifan; Anwar, Syed Muhammed; Albrecht, Jake; Adewole, Maruf; Anazodo, Udunna; Anderson, Hannah et al.
Source: Self-asserted source
Florian

The brain tumor segmentation (BraTS) challenge 2023: focus on pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)

ArXiv
2024 | Journal article
Contributors: Kazerooni, Anahita Fathi; Khalili, Nastaran; Liu, Xinyang; Haldar, Debanjan; Jiang, Zhifan; Anwar, Syed Muhammed; Albrecht, Jake; Adewole, Maruf; Anazodo, Udunna; Anderson, Hannah et al.
Source: Self-asserted source
Florian

The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)

arXiv e-prints
2024 | Journal article
Contributors: Fathi Kazerooni, Anahita; Khalili, Nastaran; Gandhi, Deep; Liu, Xinyang; Jiang, Zhifan; Muhammed Anwar, Syed; Albrecht, Jake; Adewole, Maruf; Anazodo, Udunna; Anderson, Hannah et al.
Source: Self-asserted source
Florian

The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)

arXiv preprint arXiv:2404.15009
2024 | Journal article
Contributors: Kazerooni, Anahita Fathi; Khalili, Nastaran; Gandhi, Deep; Liu, Xinyang; Jiang, Zhifan; Anwar, Syed Muhammed; Albrecht, Jake; Adewole, Maruf; Anazodo, Udunna; Anderson, Hannah et al.
Source: Self-asserted source
Florian

The Brain Tumor Segmentation-Metastases (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI

ArXiv
2024 | Journal article
Contributors: Moawad, Ahmed W; Janas, Anastasia; Baid, Ujjwal; Ramakrishnan, Divya; Saluja, Rachit; Ashraf, Nader; Jekel, Leon; Amiruddin, Raisa; Adewole, Maruf; Albrecht, Jake et al.
Source: Self-asserted source
Florian

Toward image-based personalization of glioblastoma therapy: A clinical and biological validation study of a novel, deep learning-driven tumor growth model

Neuro-Oncology Advances
2024 | Journal article
Contributors: Metz, Marie-Christin; Ezhov, Ivan; Peeken, Jan C; Buchner, Josef A; Lipkova, Jana; Kofler, Florian; Waldmannstetter, Diana; Delbridge, Claire; Diehl, Christian; Bernhardt, Denise et al.
Source: Self-asserted source
Florian

Understanding metric-related pitfalls in image analysis validation

Nature methods
2024 | Journal article
Contributors: Reinke, Annika; Tizabi, Minu D; Baumgartner, Michael; Eisenmann, Matthias; Heckmann-Nötzel, Doreen; Kavur, A Emre; Rädsch, Tim; Sudre, Carole H; Acion, Laura; Antonelli, Michela et al.
Source: Self-asserted source
Florian

Vesselformer: Towards Complete 3D Vessel Graph Generation from Images

Medical Imaging with Deep Learning
2024 | Conference paper
Contributors: Prabhakar, Chinmay; Shit, Suprosanna; Paetzold, Johannes C; Ezhov, Ivan; Koner, Rajat; Li, Hongwei; Kofler, Florian Sebastian; Menze, Bjoern
Source: Self-asserted source
Florian

Virtual reality-empowered deep-learning analysis of brain cells

Nature Methods
2024 | Journal article
Contributors: Kaltenecker, Doris; Al-Maskari, Rami; Negwer, Moritz; Hoeher, Luciano; Kofler, Florian; Zhao, Shan; Todorov, Mihail; Rong, Zhouyi; Paetzold, Johannes Christian; Wiestler, Benedikt et al.
Source: Self-asserted source
Florian

Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021

Medical Image Analysis
2024 | Journal article
Contributors: Sudre, Carole H; Van Wijnen, Kimberlin; Dubost, Florian; Adams, Hieab; Atkinson, David; Barkhof, Frederik; Birhanu, Mahlet A; Bron, Esther E; Camarasa, Robin; Chaturvedi, Nish et al.
Source: Self-asserted source
Florian

Whole-body cellular mapping in mouse using standard IgG antibodies

Nature Biotechnology
2024 | Journal article
Contributors: Mai, Hongcheng; Luo, Jie; Hoeher, Luciano; Al-Maskari, Rami; Horvath, Izabela; Chen, Ying; Kofler, Florian; Piraud, Marie; Paetzold, Johannes C; Modamio, Jennifer et al.
Source: Self-asserted source
Florian

AI-Powered Identification of Osteoporosis in Dental Panoramic Radiographs: Addressing Methodological Flaws in Current Research

Diagnostics
2024-10-16 | Journal article
DOI: 10.3390/diagnostics14202298
Contributors: Robert Gaudin; Shankeeth Vinayahalingam; Niels van Nistelrooij; Iman Ghanad; Wolfus Otto; Stephan Kewenig; Carsten Rendenbach; Vasilios Alevizakos; Pascal Grün; Florian Kofler et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Enhanced Osteoporosis Detection Using Artificial Intelligence: A Deep Learning Approach to Panoramic Radiographs with an Emphasis on the Mental Foramen

Medical Sciences
2024-09-20 | Journal article
DOI: 10.3390/medsci12030049
Contributors: Robert Gaudin; Wolfram Otto; Iman Ghanad; Stephan Kewenig; Carsten Rendenbach; Vasilios Alevizakos; Pascal Grün; Florian Kofler; Max Heiland; Constantin von See
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Radiomics-based prediction of local control in patients with brain metastases following postoperative stereotactic radiotherapy

Neuro-Oncology
2024-09-05 | Journal article | Author
DOI:

10.1093/neuonc/noae098

SOURCE-WORK-ID: 261428
PMID:

38813990
Contributors: Josef A. Buchner; Florian; Michael Mayinger; Sebastian Christ; Thomas Brunner; Wittig, Andrea; Bjoern Menze; Zimmer, Claus; Meyer, Bernhard; Matthias Guckenberger et al.
Source: check_circle
University of Zurich

A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation

IEEE Transactions on Pattern Analysis and Machine Intelligence
2024-05 | Journal article | Author
DOI:

10.1109/tpami.2023.3346330

SOURCE-WORK-ID: 253939
PMID:

38198270
Contributors: Lucas Fidon; Aertsen, Michael; Florian; Andrea Bink; David, Anna L; Deprest, Thomas; Emam, Doaa; Guffens, Frédéric; Andras Jakab; Kasprian, Gregor et al.
Source: check_circle
University of Zurich
grade
Preferred source (of 2)‎

A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation

Scientific Data
2024-05-15 | Journal article | Author
DOI:

10.1038/s41597-024-03350-9

SOURCE-WORK-ID: 269364
PMID:

38750041
Contributors: LaBella, Dominic; Khanna, Omaditya; Shan McBurney-Lin; Mclean, Ryan; Nedelec, Pierre; Rashid, Arif S; Nourel hoda Tahon; Altes, Talissa; Baid, Ujjwal; Bhalerao, Radhika et al.
Source: check_circle
University of Zurich

Approaching peak ground truth

2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)
2023 | Conference paper
Contributors: Kofler, Florian; Wahle, Johannes; Ezhov, Ivan; Wagner, Sophia J; Al-Maskari, Rami; Gryska, Emilia; Todorov, Mihail; Bukas, Christina; Meissen, Felix; Peng, Tingying et al.
Source: Self-asserted source
Florian

Blob loss: Instance imbalance aware loss functions for semantic segmentation

International Conference on Information Processing in Medical Imaging
2023 | Conference paper
Contributors: Kofler, Florian; Shit, Suprosanna; Ezhov, Ivan; Fidon, Lucas; Horvath, Izabela; Al-Maskari, Rami; Li, Hongwei Bran; Bhatia, Harsharan; Loehr, Timo; Piraud, Marie et al.
Source: Self-asserted source
Florian

Development and external validation of an MRI-based neural network for brain metastasis segmentation in the AURORA multicenter study

Radiotherapy and Oncology
2023 | Journal article
Contributors: Buchner, Josef A; Kofler, Florian; Etzel, Lucas; Mayinger, Michael; Christ, Sebastian M; Brunner, Thomas B; Wittig, Andrea; Menze, Björn; Zimmer, Claus; Meyer, Bernhard et al.
Source: Self-asserted source
Florian

Framing image registration as a landmark detection problem for better representation of clinical relevance

arXiv preprint arXiv:2308.01318
2023 | Journal article
Contributors: Waldmannstetter, Diana; Wiestler, Benedikt; Schwarting, Julian; Ezhov, Ivan; Metz, Marie; Bakas, Spyridon; Baheti, Bhakti; Chakrabarty, Satrajit; Kirschke, Jan S; Heckemann, Rolf A et al.
Source: Self-asserted source
Florian

Genetically encoded barcodes for correlative volume electron microscopy

Nature Biotechnology
2023 | Journal article
Contributors: Sigmund, Felix; Berezin, Oleksandr; Beliakova, Sofia; Magerl, Bernhard; Drawitsch, Martin; Piovesan, Alberto; Gonçalves, Filipa; Bodea, Silviu-Vasile; Winkler, Stefanie; Bousraou, Zoe et al.
Source: Self-asserted source
Florian

Identifying chromophore fingerprints of brain tumor tissue on hyperspectral imaging using principal component analysis

European Conference on Biomedical Optics
2023 | Conference paper
Contributors: Ezhov, Ivan; Giannoni, Luca; Shit, Suprosanna; Lange, Frederic; Kofler, Florian; Menze, Bjoern; Tachtsidis, Ilias; Rueckert, Daniel
Source: Self-asserted source
Florian

Identifying core MRI sequences for reliable automatic brain metastasis segmentation

Radiotherapy and Oncology
2023 | Journal article
Contributors: Buchner, Josef A; Peeken, Jan C; Etzel, Lucas; Ezhov, Ivan; Mayinger, Michael; Christ, Sebastian M; Brunner, Thomas B; Wittig, Andrea; Menze, Bjoern H; Zimmer, Claus et al.
Source: Self-asserted source
Florian

Implementation of GAN-based, synthetic T2-weighted fat saturated images in the routine radiological workflow improves spinal pathology detection

Diagnostics
2023 | Journal article
Contributors: Schlaeger, Sarah; Drummer, Katharina; Husseini, Malek El; Kofler, Florian; Sollmann, Nico; Schramm, Severin; Zimmer, Claus; Kirschke, Jan S; Wiestler, Benedikt
Source: Self-asserted source
Florian
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