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Employment (3)

USDA-ARS Daniel K Inouye US Pacific Basin Agricultural Research Center: Hilo, HI, US

2018-09-16 to present | Research Biologist (Tropical Crop and Commodity Protection Research Unit)
Employment
Source: Self-asserted source
Sheina B. Sim

USDA-ARS Daniel K Inouye US Pacific Basin Agricultural Research Center: Hilo, HI, US

2017-01-09 to 2018-09-15 | Postdoctoral Research Biologist (Tropical Crop and Commodity Protection Research )
Employment
Source: Self-asserted source
Sheina B. Sim

University of Hawaii at Manoa: Honolulu, HI, US

2013-09 to 2017-01-06 | Junior Researcher (Plant and Environmental Protection Sciences)
Employment
Source: Self-asserted source
Sheina B. Sim

Education and qualifications (2)

University of Notre Dame: Notre Dame, IN, US

2007-09 to 2013-08 | PhD (Biological Sciences)
Education
Source: Self-asserted source
Sheina B. Sim

University of California Irvine: Irvine, CA, US

2002-09 to 2006-06 | BS (Biological Sciences)
Education
Source: Self-asserted source
Sheina B. Sim

Professional activities (2)

Genetics Society of America: Bethesda, MD, US

2017 to present
Membership
Source: Self-asserted source
Sheina B. Sim

Entomological Society of America: Lanham, MD, US

2014 to present
Membership
Source: Self-asserted source
Sheina B. Sim

Funding (1)

FINDING THE GENETIC BASIS OF PUPAL COLOR IN ANASTREPHA LUDENS RELEASED FOR SIT SUPPORTING AREA WIDE SUPPRESSION

Source: Self-asserted source
Sheina B. Sim via DimensionsWizard

Works (39)

Pangenomics Links Boll Weevil Divergence With Ancient Mesoamerican Cotton Cultivation

Molecular Ecology Resources
2025-04 | Journal article
DOI: 10.1111/1755-0998.14054
Contributors: Zachary P. Cohen; Lindsey C. Perkin; Tyler J. Raszick; Sheina B. Sim; Scott M. Geib; Anna K. Childers; Gregory A. Sword; Charles P.‐C. Suh
Source: check_circle
Crossref

Chromosome-level genome assembly ofProtandrena(Anthemurgus)passiflorae(Hymenoptera: Andrenidae), a host-plant specialist bee

2025-02-08 | Preprint
DOI: 10.1101/2025.02.05.636715
Contributors: Katherine A. Parys; Rena M. Schweizer; Ligia Benavides; Scott Geib; Sheina Sim; Jay D. Evans; Michael G. Branstetter
Source: check_circle
Crossref

CiFi: Accurate long-read chromatin conformation capture with low-input requirements

2025-02-05 | Preprint
DOI: 10.1101/2025.01.31.635566
Contributors: Sean P. McGinty; Gulhan Kaya; Sheina B. Sim; Renée L. Corpuz; Michael A. Quail; Mara K. N. Lawniczak; Scott M. Geib; Jonas Korlach; Megan Y. Dennis
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Crossref

Repeated Shifts in Sociality Are Associated With Fine-tuning of Highly Conserved and Lineage-Specific Enhancers in a Socially Flexible Bee

Molecular Biology and Evolution
2024-11-01 | Journal article
DOI: 10.1093/molbev/msae229
Contributors: Beryl M Jones; Andrew E Webb; Scott M Geib; Sheina Sim; Rena M Schweizer; Michael G Branstetter; Jay D Evans; Sarah D Kocher; Jeffrey Townsend
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Crossref

Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies

Systematic Biology
2024-10-30 | Journal article
DOI: 10.1093/sysbio/syae036
Contributors: Danielle K Herrig; Ryan D Ridenbaugh; Kim L Vertacnik; Kathryn M Everson; Sheina B Sim; Scott M Geib; David W Weisrock; Catherine R Linnen; Matthew Hahn
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Crossref

Chromosome-scale genome assembly of the hunt bumble bee, Bombus huntii Greene, 1860, a species of agricultural interest

G3: Genes, Genomes, Genetics
2024-10-07 | Journal article
DOI: 10.1093/g3journal/jkae160
Contributors: Jonathan Berenguer Uhuad Koch; Sheina B Sim; Brian Scheffler; Jeffrey D Lozier; Scott M Geib; K Vogel
Source: check_circle
Crossref

Chromosome-scale genome of the polyphagous pest Anastrepha ludens (Diptera: Tephritidae) provides insights on sex chromosome evolution in Anastrepha

G3: Genes, Genomes, Genetics
2024-10-04 | Journal article
DOI: 10.1093/g3journal/jkae239
Contributors: Carlos Congrains; Sheina B Sim; Daniel F Paulo; Renee L Corpuz; Angela N Kauwe; Tyler J Simmonds; Sheron A Simpson; Brian E Scheffler; Scott M Geib; J J Emerson
Source: check_circle
Crossref

Repeated shifts in sociality are associated with fine-tuning of highly conserved and lineage-specific enhancers in a socially flexible bee

2024-08-16 | Preprint
DOI: 10.1101/2024.08.15.608154
Contributors: Beryl M Jones; Andrew E Webb; Scott M Geib; Sheina Sim; Rena M Schweizer; Michael G Branstetter; Jay D Evans; Sarah D Kocher
Source: check_circle
Crossref

otb: an automated HiC/HiFi pipeline assembles the Prosapia bicincta Genome

G3: Genes, Genomes, Genetics
2024-08-07 | Journal article
DOI: 10.1093/g3journal/jkae129
Contributors: David C Molik; Amanda R Stahlke; Sharu P Sharma; Tyler J Simmonds; Renee L Corpuz; Angela N Kauwe; Jeremy E Schrader; Charles J Mason; Sheina B Sim; Scott M Geib et al.
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Crossref

Reference genome for the Mojave poppy bee (Perdita meconis), a specialist pollinator of conservation concern

Journal of Heredity
2024-07-10 | Journal article
DOI: 10.1093/jhered/esad076
Contributors: Rena M Schweizer; Colleen G Meidt; Ligia R Benavides; Joseph S Wilson; Terry L Griswold; Sheina B Sim; Scott M Geib; Michael G Branstetter; Beth Shapiro
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Crossref

Chromosome-scale genome assembly of the Hunt bumble bee, Bombus huntii Greene, 1860, a species of agricultural interest

2024-05-02 | Preprint
DOI: 10.1101/2024.04.30.591905
Contributors: Jonathan Berenguer Uhuad Koch; Sheina B. Sim; Brian Scheffler; Jeffrey D. Lozier; Scott M. Geib
Source: check_circle
Crossref

Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae)

G3: Genes, Genomes, Genetics
2024-04-03 | Journal article
DOI: 10.1093/g3journal/jkae024
Contributors: Sheina B Sim; Carlos Congrains; Sandra M Velasco-Cuervo; Renee L Corpuz; Angela N Kauwe; Brian Scheffler; Scott M Geib; K Vogel
Source: check_circle
Crossref

Genome Report: Chromosome-scale Genome Assembly of the West Indian fruit flyAnastrepha obliqua(Diptera: Tephritidae)

2023-09-26 | Preprint
DOI: 10.1101/2023.09.22.559041
Contributors: Sheina B. Sim; Carlos Congrains; Sandra M. Velasco-Cuervo; Renee L. Corpuz; Angela N. Kauwe; Brian Scheffler; Scott M. Geib
Source: check_circle
Crossref

Whole-genome resequencing data support a single introduction of the invasive white pine sawfly, Diprion similis

Journal of Heredity
2023-05-25 | Journal article
DOI: 10.1093/jhered/esad012
Contributors: Jeremy S Davis; Sheina Sim; Scott Geib; Brian Scheffler; Catherine R Linnen; Ryan Garrick
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Crossref

Insight into weevil biology from a reference quality genome of the boll weevil, Anthonomus grandis grandis Boheman (Coleoptera: Curculionidae)

G3
2023-02-09 | Journal article
DOI: 10.1093/g3journal/jkac309
Contributors: Zachary P Cohen; Lindsey C Perkin; Sheina B Sim; Amanda R Stahlke; Scott M Geib; Anna K Childers; Timothy P L Smith; Charles Suh
Source: check_circle
Crossref

Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees

GigaScience
2022-12-28 | Journal article
DOI: 10.1093/gigascience/giad056
Contributors: Qiang Huang; Sheina B Sim; Scott M Geib; Anna Childers; Junfeng Liu; Xiuxiu Wei; Wensu Han; Francisco Posada-Florez; Allen Z Xue; Zheng Li et al.
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Crossref

A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly

Journal of Economic Entomology
2022-12-14 | Journal article
DOI: 10.1093/jee/toac166
Contributors: Daniel F Paulo; Alex Y Cha; Angela N Kauwe; Keena Curbelo; Renee L Corpuz; Tyler J Simmonds; Sheina B Sim; Scott M Geib; Cecilia Tamborindeguy
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Crossref

Evaluating Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) Response to Methyl Eugenol: Comparison of Three Common Bioassay Methods

Journal of Economic Entomology
2022-04-13 | Journal article
DOI: 10.1093/jee/toac018
Contributors: Sheina B Sim; Keena M Curbelo; Nicholas C Manoukis; Dong H Cha; Nikolaos Papadopoulos
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Crossref

A chromosome-scale genome assembly of a Bacillus thuringiensis Cry1Ac insecticidal protein resistant strain of Helicoverpa zea

2022-04-12 | Preprint
DOI: 10.1101/2022.04.12.488070
Contributors: Amanda R. Stahlke; Jennifer Chang; Luke R. Tembrock; Sheina B. Sim; Sivanandan Chudalayandi; Scott M. Geib; Brian E. Scheffler; Omaththage P. Perera; Todd M. Gilligan; Anna K. Childers et al.
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Crossref

The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research

Insects
2021-07-09 | Journal article
DOI: 10.3390/insects12070626
Contributors: Anna K. Childers; Scott M. Geib; Sheina B. Sim; Monica F. Poelchau; Brad S. Coates; Tyler J. Simmonds; Erin D. Scully; Timothy P. L. Smith; Christopher P. Childers; Renee L. Corpuz et al.
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Crossref
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Taro Genome Assembly and Linkage Map Reveal QTLs for Resistance to Taro Leaf Blight

G3: Genes|Genomes|Genetics
2020-08 | Journal article
DOI: 10.1534/g3.120.401367
Contributors: M. Renee Bellinger; Roshan Paudel; Steven Starnes; Lukas Kambic; Michael B. Kantar; Thomas Wolfgruber; Kurt Lamour; Scott Geib; Sheina Sim; Susan C. Miyasaka et al.
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Crossref

Transpacific coalescent pathways of coconut rhinoceros beetle biotypes: Resistance to biological control catalyses resurgence of an old pest

Molecular Ecology
2018-11 | Journal article
DOI: 10.1111/mec.14879
Contributors: Jonathan Bradley Reil; Camiel Doorenweerd; Michael San Jose; Sheina B. Sim; Scott M. Geib; Daniel Rubinoff
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Crossref

The ABCs of CRISPR in Tephritidae: Developing methods for inducing heritable mutations in the genera Anastrepha , Bactrocera , and Ceratitis

Insect Molecular Biology
2018-11-13 | Journal article
DOI: 10.1111/imb.12550
Contributors: Sheina B. Sim; Angela Kauwe; Rocio E. Y. Ruano; Pedro Rendon; Scott M. Geib
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Crossref

Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission

GigaScience
2018-04-01 | Journal article
DOI: 10.1093/gigascience/giy018
Contributors: Scott M Geib; Brian Hall; Theodore Derego; Forest T Bremer; Kyle Cannoles; Sheina B Sim
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Crossref

Molecular characterization of interspecific competition of Diachasmimorpha longicaudata (Ashmead) and Fopius arisanus (Sonan) parasitizing the oriental fruit fly, Bactrocera dorsalis (Hendel)

Biological Control
2018-03 | Journal article
DOI: 10.1016/j.biocontrol.2017.11.012
Part of ISSN: 1049-9644
Contributors: Guang Hong Liang; Lie Qing Fu; Jun Xian Zheng; Hao Yu Lin; Jian Hui Lin; Sheina B. Sim; Eric B. Jang; Wade P. Heller; Scott M. Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

mvmapper: Interactive spatial mapping of genetic structures

Molecular Ecology Resources
2018-03 | Journal article
DOI: 10.1111/1755-0998.12724
Contributors: Julian R. Dupuis; Forest T. Bremer; Thibaut Jombart; Sheina B. Sim; Scott M. Geib
Source: check_circle
Crossref

Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae)

Biological Invasions
2017-11-11 | Journal article
DOI: 10.1007/s10530-017-1621-z
Part of ISSN: 1387-3547
Contributors: Julian R. Dupuis; Sheina B. Sim; Michael San Jose; Luc Leblanc; M. Aftab Hoassain; Daniel Rubinoff; Scott M. Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Genetic Evidence for the Introduction of Rhagoletis pomonella (Diptera: Tephritidae) into the Northwestern United States

Journal of Economic Entomology
2017-10-06 | Journal article
DOI: 10.1093/jee/tox248
Part of ISSN: 0022-0493
Contributors: Sheina B Sim; Meredith M Doellman; Glen R Hood; Wee L Yee; Thomas H Q Powell; Dietmar Schwarz; Robert B Goughnour; Scott P Egan; Gilbert St Jean; James J Smith et al.
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

A New Diagnostic Resource for Ceratitis capitata Strain Identification Based on QTL Mapping

G3: Genes|Genomes|Genetics
2017-09-09 | Journal article
DOI: 10.1534/g3.117.300169
Part of ISSN: 2160-1836
Contributors: Sheina B. Sim; Raul Ruiz-Arce; Norman B. Barr; Scott M. Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search
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Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies

G3: Genes|Genomes|Genetics
2017-08 | Journal article
DOI: 10.1534/g3.117.040741
Contributors: Scott M. Geib; Guang Hong Liang; Terence D. Murphy; Sheina B. Sim
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Crossref

A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of White Pupae

G3: Genes|Genomes|Genetics
2017-04 | Journal article
DOI: 10.1534/g3.117.040170
Part of ISSN: 2160-1836
Contributors: Sheina B. Sim; Scott M. Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search
grade
Preferred source (of 2)‎

Molecular Markers Detect Cryptic Predation on Coffee Berry Borer (Coleoptera: Curculionidae) by Silvanid and Laemophloeid Flat Bark Beetles (Coleoptera: Silvanidae, Laemophloeidae) in Coffee Beans

Journal of Economic Entomology
2015-10 | Journal article
DOI: 10.1093/jee/tov284
Part of ISSN: 0022-0493
Contributors: Sheina B. Sim; Nicole M. Yoneishi; Eva Brill; Scott M. Geib; Peter A. Follett
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Hybridization and the spread of the apple maggot fly,Rhagoletis pomonella(Diptera: Tephritidae), in the northwestern United States

Evolutionary Applications
2015-08 | Journal article
DOI: 10.1111/eva.12298
Part of ISSN: 1752-4571
Contributors: Tracy Arcella; Glen R. Hood; Thomas H. Q. Powell; Sheina B. Sim; Wee L. Yee; Dietmar Schwarz; Scott P. Egan; Robert B. Goughnour; James J. Smith; Jeffrey L. Feder
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression

GigaScience
2015-08-04 | Journal article
DOI: 10.1186/s13742-015-0075-4
Part of ISSN: 2047-217X
Contributors: Bernarda Calla; Sheina B. Sim; Brian Hall; Theodore DeRego; Guang Hong Liang; Scott M. Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae

GigaScience
2015-03 | Journal article
DOI: 10.1186/s13742-015-0053-x
Part of ISSN: 2047-217X
Contributors: Sheina B Sim; Bernarda Calla; Brian Hall; Theodore DeRego; Scott M Geib
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Molecular Species Identification of Cryptic Apple and Snowberry Maggots (Diptera: Tephritidae) in Western and Central Washington

Environmental Entomology
2013-10-01 | Journal article
DOI: 10.1603/en13038
Part of ISSN: 0046-225X
Contributors: Emily Green; Kristin Almskaar; Sheina B. Sim; Tracy Arcella; Wee L. Yee; Jeffrey L. Feder; Dietmar Schwarz
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

The Geographic Distribution of <I>Rhagoletis pomonella</I> (Diptera: Tephritidae) in the Western United States: Introduced Species or Native Population?

Annals of the Entomological Society of America
2013-01-01 | Journal article
DOI: 10.1603/an12074
Part of ISSN: 0013-8746
Contributors: Glen R. Hood; Wee Yee; Robert B. Goughnour; Sheina B. Sim; Scott P. Egan; Tracy Arcella; Gilbert Saint-Jean; Thomas H. Q. Powell; Charles C. Y. Xu; Jeffrey L. Feder
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Environmental interactions during host race formation: host fruit environment moderates a seasonal shift in phenology in host races of Rhagoletis pomonella

Functional Ecology
2012-05-11 | Journal article
DOI: 10.1111/j.1365-2435.2012.01992.x
Part of ISSN: 0269-8463
Contributors: Gregory J. Ragland; Sheina B. Sim; Serra Goudarzi; Jeffrey L. Feder; Daniel A. Hahn
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Identification of Host Fruit Volatiles from Domestic Apple (Malus domestica), Native Black Hawthorn (Crataegus douglasii) and Introduced Ornamental Hawthorn (C. monogyna) Attractive to Rhagoletis pomonella Flies from the Western United States

Journal of Chemical Ecology
2012-03 | Journal article
DOI: 10.1007/s10886-012-0087-9
Part of ISSN: 0098-0331
Contributors: Dong H. Cha; Wee L. Yee; Robert B. Goughnour; Sheina B. Sim; Thomas H. Q. Powell; Jeffrey L. Feder; Charles E. Linn
Source: Self-asserted source
Sheina B. Sim via Crossref Metadata Search

Peer review (1 review for 1 publication/grant)

Review activity for Wellcome open research. (1)
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