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ResearcherID: I-4281-2014
Loop profile: 945779

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Employment (5)

Foundation for Research and Technology Hellas: Heraklion, GR

2023-12-01 to present | Postdoctoral Researcher (Institute of Computer Science)
Employment
Source: Self-asserted source
Panagiotis Ioannidis

Foundation for Research and Technology Hellas: Heraklion, GR

2018-01-01 to 2023-11-30 | Postdoctoral Associate (Institute of Molecular Biology and Biotechnology)
Employment
Source: Self-asserted source
Panagiotis Ioannidis

University of Geneva Institute of Genetics and Genomics of Geneva: Geneva, GE, CH

2013-06-01 to 2016-12-31 | Postdoctoral researcher (Department of Genetic Medicine and Development)
Employment
Source: Self-asserted source
Panagiotis Ioannidis

University of Maryland Institute for Genome Sciences: Baltimore, MD, US

2011-04-01 to 2013-04-15 | Postdoctoral Researcher (Institute for Genome Sciences)
Employment
Source: Self-asserted source
Panagiotis Ioannidis

INRA Centre de Nancy-Lorraine: Champenoux, Lorraine, FR

2010-03-15 to 2011-02-28 | Postdoctoral Researcher (Tree-microbes interactions)
Employment
Source: Self-asserted source
Panagiotis Ioannidis

Education and qualifications (2)

University of Patras Department of Environmental and Natural Resources Management: Agrinio, GR

2003-09-01 to 2008-12-18 | PhD (Department of Environmental and Natural Resources Management)
Education
Source: Self-asserted source
Panagiotis Ioannidis

University of Patras Department of Environmental and Natural Resources Management: Agrinio, GR

1998-09-15 to 2003-06-30 | BSc (Department of Environmental and Natural Resources Management)
Education
Source: Self-asserted source
Panagiotis Ioannidis

Works (29)

Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies

Genome Biology and Evolution
2024-09-03 | Journal article
DOI: 10.1093/gbe/evae186
Contributors: Jason Charamis; Sofia Balaska; Panagiotis Ioannidis; Vít Dvořák; Konstantinos Mavridis; Mary Ann McDowell; Pavlos Pavlidis; René Feyereisen; Petr Volf; John Vontas et al.
Source: check_circle
Crossref

Genome sequencing, assembly and annotation of the carob tree, Ceratonia siliqua(Eudicots:Fabaceae)

2023-02-03 | Preprint
DOI: 10.1101/2023.02.03.526947
Contributors: Androniki C. Bibi; Panagiotis Ioannidis; Christos Bazakos; Kriton Kalantidis
Source: check_circle
Crossref

Functional characterization of cytochrome P450s associated with pyrethroid resistance in the olive fruit flyBactrocera oleae

2022-12-08 | Preprint
DOI: 10.1101/2022.12.07.519177
Contributors: Anastasia Kampouraki; Dimitra Tsakireli; Venetia Koidou; Marianna Stavrakaki; Stavroula Kaili; Yannis Livadaras; Linda Grigoraki; Panagiotis Ioannidis; Emmanouil Roditakis; John Vontas
Source: check_circle
Crossref

Efficient genome editing in the olive fruit fly, Bactrocera oleae

Insect Molecular Biology
2020-08 | Journal article
DOI: 10.1111/imb.12640
Contributors: V. Koidou; S. Denecke; P. Ioannidis; I. Vlatakis; I. Livadaras; J. Vontas
Source: check_circle
Crossref

Developmental plasticity shapes social traits and selection in a facultatively eusocial bee

Proceedings of the National Academy of Sciences
2020-06-16 | Journal article
DOI: 10.1073/pnas.2000344117
Contributors: Karen M. Kapheim; Beryl M. Jones; Hailin Pan; Cai Li; Brock A. Harpur; Clement F. Kent; Amro Zayed; Panagiotis Ioannidis; Robert M. Waterhouse; Callum Kingwell et al.
Source: check_circle
Crossref

Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

Genome Biology
2019-12 | Journal article
DOI: 10.1186/s13059-019-1704-5
Contributors: Mathieu Seppey; Panagiotis Ioannidis; Brent C. Emerson; Camille Pitteloud; Marc Robinson-Rechavi; Julien Roux; Hermes E. Escalona; Duane D. McKenna; Bernhard Misof; Seunggwan Shin et al.
Source: check_circle
Crossref

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Genome Biology
2019-12 | Journal article
DOI: 10.1186/s13059-019-1660-0
Contributors: Kristen A. Panfilio; Iris M. Vargas Jentzsch; Joshua B. Benoit; Deniz Erezyilmaz; Yuichiro Suzuki; Stefano Colella; Hugh M. Robertson; Monica F. Poelchau; Robert M. Waterhouse; Panagiotis Ioannidis et al.
Source: check_circle
Crossref

Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

2018-08-26 | Other
DOI: 10.1101/399808
Contributors: Mathieu Seppey; Panagiotis Ioannidis; Brent C. Emerson; Camille Pitteloud; Marc Robinson-Rechavi; Julien Roux; Hermes E. Escalona; Duane D. McKenna; Bernhard Misof; Seunggwan Shin et al.
Source: check_circle
Crossref

BUSCO applications from quality assessments to gene prediction and phylogenomics.

Molecular biology and evolution
2017-12 | Journal article
DOI: 10.1093/molbev/msx319
PMID: 29220515
PMC: PMC5850278
Contributors: Waterhouse RM; Seppey M; Simão FA; Manni M; Ioannidis P; Klioutchnikov G; Kriventseva EV; Zdobnov EM
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

2017-10-11 | Preprint
DOI: 10.1101/201731
Contributors: Kristen A. Panfilio; Iris M. Vargas Jentzsch; Joshua B. Benoit; Deniz Erezyilmaz; Yuichiro Suzuki; Stefano Colella; Hugh M. Robertson; Monica F. Poelchau; Robert M. Waterhouse; Panagiotis Ioannidis et al.
Source: check_circle
Crossref

BUSCO applications from quality assessments to gene prediction and phylogenomics

2017-08-17 | Preprint
DOI: 10.1101/177485
Contributors: Robert M. Waterhouse; Mathieu Seppey; Felipe A. Simão; Mosè Manni; Panagiotis Ioannidis; Guennadi Klioutchnikov; Evgenia V. Kriventseva; Evgeny M. Zdobnov
Source: check_circle
Crossref

Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders.

Genome biology and evolution
2017-02 | Journal article
DOI: 10.1093/gbe/evx006
PMID: 28137743
PMC: PMC5381652
Contributors: Ioannidis P; Simao FA; Waterhouse RM; Manni M; Seppey M; Robertson HM; Misof B; Niehuis O; Zdobnov EM
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.

Nucleic acids research
2017-01 | Journal article
DOI: 10.1093/nar/gkw1119
PMID: 27899580
PMC: PMC5210582
Contributors: Zdobnov EM; Tegenfeldt F; Kuznetsov D; Waterhouse RM; Simão FA; Ioannidis P; Seppey M; Loetscher A; Kriventseva EV
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome.

2016 | Journal article
DOI: 10.1038/ncomms10165
PMID: 26836814
PMC: PMC4740739
Contributors: Benoit JB; Adelman ZN; Reinhardt K; Dolan A; Poelchau M; Jennings EC; Szuter EM; Hagan RW; Gujar H; Shukla JN et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Genome biology
2016-11 | Journal article
DOI: 10.1186/s13059-016-1088-8
PMID: 27832824
PMC: PMC5105290
Contributors: McKenna DD; Scully ED; Pauchet Y; Hoover K; Kirsch R; Geib SM; Mitchell RF; Waterhouse RM; Ahn SJ; Arsala D et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Genome sequencing of the phytoseiid predatory mite Metaseiulus occidentalis reveals completely atomised Hox genes and super-dynamic intron evolution.

2016-03 | Journal article
PMID: 26951779
Contributors: Hoy MA; Waterhouse RM; Wu K; Estep AS; Ioannidis P; Palmer WJ; Pomerantz AF; Simão FA; Thomas J; Jiggins FM et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

2016-01 | Journal article
DOI: 10.1093/nar/gkv1310
PMID: 26615188
PMC: PMC4702916
Contributors: SIB Swiss Institute of Bioinformatics Members
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions.

2015 | Journal article
DOI: 10.1038/ncomms8344
PMID: 26108605
PMC: PMC4491171
Contributors: Anstead CA; Korhonen PK; Young ND; Hall RS; Jex AR; Murali SC; Hughes DS; Lee SF; Perry T; Stroehlein AJ et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

2015-10 | Journal article
DOI: 10.1093/bioinformatics/btv351
PMID: 26059717
Contributors: Simão FA; Waterhouse RM; Ioannidis P; Kriventseva EV; Zdobnov EM
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.

2015-03 | Journal article
DOI: 10.1016/j.cub.2014.12.057
PMID: 25660540
Contributors: Zhao C; Escalante LN; Chen H; Benatti TR; Qu J; Chellapilla S; Waterhouse RM; Wheeler D; Andersson MN; Bao R et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.

2015-01 | Journal article
DOI: 10.1093/nar/gku1220
PMID: 25428351
PMC: PMC4383991
Contributors: Kriventseva EV; Tegenfeldt F; Petty TJ; Waterhouse RM; Simão FA; Pozdnyakov IA; Ioannidis P; Zdobnov EM
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys.

2014 | Journal article
DOI: 10.1186/1471-2164-15-738
PMID: 25168586
PMC: PMC4174608
Contributors: Ioannidis P; Lu Y; Kumar N; Creasy T; Daugherty S; Chibucos MC; Orvis J; Shetty A; Ott S; Flowers M et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

2014-12 | Journal article
DOI: 10.1016/j.ajhg.2014.11.003
PMID: 25480033
PMC: PMC4259975
Contributors: Popadin KY; Gutierrez-Arcelus M; Lappalainen T; Buil A; Steinberg J; Nikolaev SI; Lukowski SW; Bazykin GA; Seplyarskiy VB; Ioannidis P et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi.

2013 | Journal article
DOI: 10.1186/1471-2164-14-639
PMID: 24053607
PMC: PMC3849323
Contributors: Ioannidis P; Johnston KL; Riley DR; Kumar N; White JR; Olarte KT; Ott S; Tallon LJ; Foster JM; Taylor MJ et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation.

2013 | Journal article
DOI: 10.1371/journal.pone.0055929
PMID: 23418476
PMC: PMC3572175
Contributors: Uroz S; Ioannidis P; Lengelle J; Cébron A; Morin E; Buée M; Martin F
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

The diversity and evolution of Wolbachia ankyrin repeat domain genes.

2013 | Journal article
DOI: 10.1371/journal.pone.0055390
PMID: 23390535
PMC: PMC3563639
Contributors: Siozios S; Ioannidis P; Klasson L; Andersson SG; Braig HR; Bourtzis K
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Extensive genomic diversity of closely related Wolbachia strains.

2009-07 | Journal article
DOI: 10.1099/mic.0.027581-0
PMID: 19389774
PMC: PMC2888116
Contributors: Ishmael N; Dunning Hotopp JC; Ioannidis P; Biber S; Sakamoto J; Siozios S; Nene V; Werren J; Bourtzis K; Bordenstein SR et al.
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Coding potential prediction in Wolbachia using artificial neural networks.

In silico biology
2007 | Journal article
PMID: 17688435
Contributors: Lambros S; Panos I; Spiridon L
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria.

2007 | Journal article
DOI: 10.1186/1471-2164-8-182
PMID: 17584494
PMC: PMC1914354
Contributors: Ioannidis P; Dunning Hotopp JC; Sapountzis P; Siozios S; Tsiamis G; Bordenstein SR; Baldo L; Werren JH; Bourtzis K
Source: Self-asserted source
Panagiotis Ioannidis via Europe PubMed Central

Peer review (9 reviews for 6 publications/grants)

Review activity for Biological invasions. (1)
Review activity for BMC genomics (1)
Review activity for Ecotoxicology and environmental safety. (1)
Review activity for Heredity (1)
Review activity for Scientific data. (1)
Review activity for Wellcome open research. (4)
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