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Employment (1)

Institute of Plant Genetics and Crop Plant Research: Seeland, Sachsen-Anhalt, DE

Group Leader (Molecular Genetics)
Employment
Source: Self-asserted source
Jedrzej Szymanski

Works (40)

Deep learning the cis-regulatory code for gene expression in selected model plants

Nature Communications
2024-04-25 | Journal article
DOI: 10.1038/s41467-024-47744-0
Contributors: Fritz Forbang Peleke; Simon Maria Zumkeller; Mehmet Gültas; Armin Schmitt; Jędrzej Szymański
Source: check_circle
Crossref

Integrated multi‐omics analyses and genome‐wide association studies reveal prime candidate genes of metabolic and vegetative growth variation in canola

The Plant Journal
2024-02 | Journal article
DOI: 10.1111/tpj.16524
Contributors: Dominic Knoch; Rhonda C. Meyer; Marc C. Heuermann; David Riewe; Fritz F. Peleke; Jędrzej Szymański; Amine Abbadi; Rod J. Snowdon; Thomas Altmann
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Crossref

Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana

The plant cell
2023 | Working paper
SOURCE-WORK-ID: FZJ-2023-01797
Part of ISSN: 1040-4651
HANDLE: 2128/34280
Contributors: Luzarowska, Urszula; Ruß, Anne-Kathrin; Joubès, Jérôme; Batsale, Marguerite; Szymański, Jędrzej Jakub; Thirumalaikumar, Venkatesh P; Luzarowski, Marcin; Wu, Si; Zhu, Feng; Endres, Niklas et al.
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Forschungszentrum Jülich

SWEET11b transports both sugar and cytokinin in developing barley grains

Teaching tools in plant biology
2023 | Journal article
DOI: 10.1093/plcell/koad055
SOURCE-WORK-ID: FZJ-2023-03111
Part of ISSN: 1040-4651
PMID: 36857316
WOSUID:

WOS:000946526400001
Contributors: Radchuk, Volodymyr; Belew, Zeinu M; Gündel, Andre; Mayer, Simon; Hilo, Alexander; Hensel, Goetz; Sharma, Rajiv; Neumann, Kerstin; Ortleb, Stefan; Wagner, Steffen et al.
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Forschungszentrum Jülich

Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana

The Plant Cell
2023-05-29 | Journal article
DOI: 10.1093/plcell/koad059
Contributors: Urszula Luzarowska; Anne-Kathrin Ruß; Jérôme Joubès; Marguerite Batsale; Jędrzej Szymański; Venkatesh P. Thirumalaikumar; Marcin Luzarowski; Si Wu; Feng Zhu; Niklas Endres et al.
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Crossref

Deep learning the cis-regulatory code for gene expression in selected model plants

2023-05-23 | Preprint
DOI: 10.21203/rs.3.rs-2873437/v1
Contributors: Fritz Forbang Peleke; Simon Maria Zumkeller; Mehmet Gültas; Armin Schmitt; Jędrzej Jakub Szymański
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Crossref
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From data to knowledge – big data needs stewardship, a plant phenomics perspective

The Plant Journal
2022-07 | Journal article
DOI: 10.1111/tpj.15804
Contributors: Daniel Arend; Dennis Psaroudakis; Junaid Altaf Memon; Elena Rey‐Mazón; Danuta Schüler; Jedrzej Jakub Szymanski; Uwe Scholz; Astrid Junker; Matthias Lange
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Crossref

Steroidal alkaloids defence metabolism and plant growth are modulated by the joint action of gibberellin and jasmonate signalling

New Phytologist
2022-02 | Journal article
DOI: 10.1111/nph.17845
Contributors: Sayantan Panda; Adam Jozwiak; Prashant D. Sonawane; Jedrzej Szymanski; Yana Kazachkova; Andrii Vainer; Himabindu Vasuki Kilambi; Efrat Almekias‐Siegl; Varvara Dikaya; Samuel Bocobza et al.
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Crossref

Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation

Algal Research
2021 | Journal article
DOI: 10.1016/J.ALGAL.2021.102554
WOSUID: WOS:000719940000006
Contributors: Machado, Mariana; Vaz, Marcelo Gomes Marcal Vieira; Bromke, Mariusz A.; Rosa, Rinamara Martins; Covell, Lidiane; de Souza, Leonardo Perez; Rocha, Diego Ismael; Martins, Marcio Aredes; Araujo, Wagner L.; Szymanski, Jedrzej et al.
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Web of Science Researcher Profile Sync

Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C3 and C4 plants

Nature Plants
2021-12-23 | Journal article
DOI: 10.1038/s41477-021-01042-5
Contributors: Haim Treves; Anika Küken; Stéphanie Arrivault; Hirofumi Ishihara; Ines Hoppe; Alexander Erban; Melanie Höhne; Thiago Alexandre Moraes; Joachim Kopka; Jedrzej Szymanski et al.
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Crossref

Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga

Nature Plants
2020 | Journal article
DOI: 10.1038/S41477-020-0729-9
WOSUID: WOS:000553233500001
Contributors: Treves, Haim; Siemiatkowska, Beata; Luzarowska, Urszula; Murik, Omer; Fernandez-Pozo, Noe; Moraes, Thiago Alexandre; Erban, Alexander; Armbruster, Ute; Brotman, Yariv; Kopka, Joachim et al.
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Web of Science Researcher Profile Sync

Analysis of wild tomato introgression lines elucidates the genetic basis of transcriptome and metabolome variation underlying fruit traits and pathogen response

Nature Genetics
2020-10-28 | Journal article
DOI: 10.1038/s41588-020-0690-6
Contributors: Jędrzej Szymański; Samuel Bocobza; Sayantan Panda; Prashant Sonawane; Pablo D. Cárdenas; Justin Lashbrooke; Avinash Kamble; Nir Shahaf; Sagit Meir; Arnaud Bovy et al.
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Crossref

Hello darkness, my old friend: 3-Ketoacyl-Coenzyme A Synthase4 is a branch point in the regulation of triacylglycerol synthesis inArabidopsis thaliana

2020-07-29 | Preprint
DOI: 10.1101/2020.07.27.223388
Contributors: Urszula Luzarowska; Anne-Kathrin Ruß; Jérôme Joubès; Marguerite Batsale; Jędrzej Szymański; Venkatesh Periyakavanam Thirumalaikumar; Marcin Luzarowski; Si Wu; Feng Zhu; Niklas Endres et al.
Source: check_circle
Crossref

Pathways to defense metabolites and evading fruit bitterness in genus <i>Solanum</i> evolved through 2-oxoglutarate-dependent dioxygenases

Nature Communications
2019 | Journal article
DOI: 10.1038/S41467-019-13211-4
WOSUID: WOS:000496409800017
Contributors: Cardenas, Pablo D.; Sonawane, Prashant D.; Heinig, Uwe; Jozwiak, Adam; Panda, Sayantan; Abebie, Bekele; Kazachkova, Yana; Pliner, Margarita; Unger, Tamar; Wolf, Dalia et al.
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Web of Science Researcher Profile Sync

A Multilevel Study of Melon Fruit Reticulation Provides Insight into Skin Ligno-Suberization Hallmarks

Plant Physiology
2019-04 | Journal article
DOI: 10.1104/pp.18.01158
Contributors: Hagai Cohen; Yonghui Dong; Jedrzej Szymanski; Justin Lashbrooke; Sagit Meir; Efrat Almekias-Siegl; Viktoria Valeska Zeisler-Diehl; Lukas Schreiber; Asaph Aharoni
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Crossref

Data integration, metabolic networks and systems biology

Annual Plant Reviews
2018 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems

Nature communications
2018 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Assimilation of ‘omics’ strategies to study the cuticle layer and suberin lamellae in plants

Journal of experimental botany
2017 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism.

Nature plants
2017 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Involvement of a gut--retina axis in protection against dietary glycemia-induced age-related macular degeneration

Proceedings of the National Academy of Sciences
2017 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Metabolic flexibility underpins growth capabilities of the fastest growing alga

Current Biology
2017 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism

Nature plants
2017 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Label‐free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development

The Plant Journal
2017-04 | Journal article
DOI: 10.1111/tpj.13490
Contributors: Jedrzej Szymanski; Yishai Levin; Alon Savidor; Dario Breitel; Louise Chappell‐Maor; Uwe Heinig; Nadine Töpfer; Asaph Aharoni
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Crossref

Comprehensive metabolic reprograming in freshwater Nitzschia palea strains undergoing nitrogen starvation is likely associated with its ecological origin

Algal research
2016 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Interaction of Metabolome and Microbiome Contributes to Dietary Glycemia-induced Age-related Macular Degeneration in Aged C57BL/6J Mice

Investigative Ophthalmology & Visual Science
2016 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Linking Plant Amino Acids with Energy and Stress A Systems Biology Perspective

OMICS TECHNOLOGIES AND CROP IMPROVEMENT
2015 | Journal article
DOI: 10.1201/B17573-16
WOSUID: WOS:000362223500016
Contributors: Szymanski, Jedrzej; Galili, Gad
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Web of Science Researcher Profile Sync

Linking gene expression and membrane lipid composition of Arabidopsis

The Plant Cell
2014 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Linking Plant amino acids with Energy and Stress

Omics Technologies and Crop Improvement
2014 | Book chapter
Source: Self-asserted source
Jedrzej Szymanski

Salt stress and senescence: identification of cross-talk regulatory components

Journal of experimental botany
2014 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

The investment in scent: time-resolved metabolic processes in developing volatile-producing Nigella sativa L. Seeds

PloS one
2013 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light

The Plant Journal
2011 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Comparative functional genomics of salt stress in related model and cultivated plants identifies and overcomes limitations to translational genomics

PloS one
2011 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

DATA INTEGRATION, METABOLIC NETWORKS AND SYSTEMS BIOLOGY

Phosphorus Metabolism in Plants
2011 | Journal article
DOI: 10.1002/9781444339956.CH9
WOSUID: WOS:000527122400010
Contributors: Redestig, Henning; Szymanski, Jedrzej; Hirai, Masami Y.; Selbig, Joachim; Willmitzer, Lothar; Nikoloski, Zoran; Saito, Kazuki
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Web of Science Researcher Profile Sync

Metabolomic and transcriptomic stress response of Escherichia coli

Molecular systems biology
2010 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus

Plant, cell & environment
2010 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development

Plant Physiology
2009 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Integration of correlative relationships in metabolic and transcript data from model organisms: arabidopsis thaliana and escherichia coli

2009 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Stability of metabolic correlations under changing environmental conditions in Escherichia coli--a systems approach

PLoS One
2009 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

On the processing of metabolic information through metabolite--gene communication networks: An approach for modelling causality

Phytochemistry
2007 | Journal article
Source: Self-asserted source
Jedrzej Szymanski

Annual Plant Reviews online

Journal article
DOI: 10.1002/9781119312994.APR0469
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Web of Science Researcher Profile Sync

Peer review (6 reviews for 5 publications/grants)

Review activity for Journal of experimental botany. (1)
Review activity for Nature communications (2)
Review activity for Nature genetics. (1)
Review activity for Plant physiology. (1)
Review activity for Small. (1)
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