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ResearcherID: B-8855-2009

Keywords

Evolution, Genomics, Coevolution, Population Genetics

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United States

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Employment (2)

University of Maryland: College Park, MD, US

2009-01-01 to present | Professor (Biology)
Employment
Source: Self-asserted source
Carlos Machado

University of Arizona: Tucson, Arizona, US

2003-01-01 to 2008-12-31 | Assistant Professor (Ecology and Evolutionary Biology)
Employment
Source: Self-asserted source
Carlos Machado

Education and qualifications (1)

University of California: Irvine, CA, US

1993-09-01 to 1998-05-30 | PhD (Ecology and Evolutionary Biology)
Education
Source: Self-asserted source
Carlos Machado

Works (50 of 63)

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Page 1 of 2

Somy evolution in the honey bee infecting trypanosomatid parasite Lotmaria passim

G3: Genes, Genomes, Genetics
2025-01-08 | Journal article
DOI: 10.1093/g3journal/jkae258
Contributors: Lindsey M Markowitz; Anthony Nearman; Zexuan Zhao; Dawn Boncristiani; Anzhelika Butenko; Luis Miguel de Pablos; Arturo Marin; Guang Xu; Carlos A Machado; Ryan S Schwarz et al.
Source: check_circle
Crossref

Somy evolution in the honey bee infecting trypanosomatid parasite,Lotmaria passim

2024-07-16 | Preprint
DOI: 10.1101/2024.07.12.603340
Contributors: Lindsey M. Markowitz; Anthony Nearman; Zexuan Zhao; Dawn Boncristiani; Anzhelika Butenko; Luis Miguel de Pablos; Arturo Marin; Guang Xu; Carlos A. Machado; Ryan S. Schwarz et al.
Source: check_circle
Crossref

The Complex Landscape of Structural Divergence Between the Drosophila pseudoobscura and D. persimilis Genomes

Genome Biology and Evolution
2024-03-02 | Journal article
DOI: 10.1093/gbe/evae047
Contributors: Javier Carpinteyro-Ponce; Carlos A Machado; Cristina Vieira
Source: check_circle
Crossref

Field sampling of fig pollinator wasps across host species and host developmental phase: Implications for host recognition and specificity

Ecology and Evolution
2023-09 | Journal article
DOI: 10.1002/ece3.10501
Part of ISSN: 2045-7758
Contributors: Aafke Oldenbeuving; Adalberto Gómez‐Zúniga; Ximena Florez‐Buitrago; Ana M. Gutiérrez‐Zuluaga; Carlos A. Machado; Tom Van Dooren; Jacques van Alphen; Jacobus C. Biesmeijer; Edward Allen Herre
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Pollinator and host sharing lead to hybridization and introgression in Panamanian free‐standing figs, but not in their pollinator wasps

Ecology and Evolution
2023-01 | Journal article
DOI: 10.1002/ece3.9673
Contributors: Jordan D. Satler; Edward Allen Herre; Tracy A. Heath; Carlos A. Machado; Adalberto Gómez Zúñiga; K. Charlotte Jandér; Deren A. R. Eaton; John D. Nason
Source: check_circle
Crossref

Pollinator and host sharing lead to hybridization and introgression in Panamanian free-standing figs, but not in their pollinator wasps

2022-08-05 | Preprint
DOI: 10.1101/2022.08.04.502839
Contributors: Jordan D. Satler; Edward Allen Herre; Tracy A. Heath; Carlos A. Machado; Adalberto Gómez Zúñiga; K. Charlotte Jandér; Deren A. R. Eaton; John D. Nason
Source: check_circle
Crossref

Phylogenetic diversity of two common Trypanosoma cruzi lineages in the Southwestern United States

Infection, Genetics and Evolution
2022-04 | Journal article
DOI: 10.1016/j.meegid.2022.105251
Part of ISSN: 1567-1348
Contributors: Carlos A. Flores-López; Elizabeth A. Mitchell; Carolina E. Reisenman; Sahotra Sarkar; Philip C. Williamson; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Genome‐wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs

Molecular Ecology
2022-02-07 | Journal article
DOI: 10.1111/mec.16373
Part of ISSN: 1365-294X
Contributors: Jordan Satler; Edward Allen Herre; Tracy A. Heath; Carlos A. Machado; Adalberto Gómez Zúñiga; John D. Nason
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Phylogenetic diversity of two common Trypanosoma cruzi lineages in the Southwestern United States

2021-11-12 | Other
DOI: 10.1101/2021.11.10.468115
Contributors: Carlos A. Flores-López; Elizabeth A. Mitchell; Carolina E. Reisenman; Sahotra Sarkar; Philip C. Williamson; Carlos A. Machado
Source: check_circle
Crossref

Inversions shape the divergence of Drosophila pseudoobscura and Drosophila persimilis on multiple timescales

Evolution
2021-07 | Journal article
DOI: 10.1111/evo.14278
Contributors: Katharine L. Korunes; Carlos A. Machado; Mohamed A. F. Noor
Source: check_circle
Crossref

Molecular mechanisms of mutualistic and antagonistic interactions in a plant-pollinator association.

Nature ecology & evolution
2021-05-17 | Journal article | Author
DOI: 10.1038/s41559-021-01469-1
PMID: 34002050
Contributors: Rong Wang; Yang Y; Jing Y; Simon Segar; Zhang Y; Gang Wang; Chen J; Liu QF; Chen S; Chen Y et al.
Source: Self-asserted source
Carlos Machado

Community Structure and Undescribed Species Diversity in Non-Pollinating Fig Wasps Associated with the Strangler Fig Ficus petiolaris

Insect Systematics and Diversity
2020-03-01 | Journal article
DOI: 10.1093/isd/ixaa005
Part of ISSN: 2399-3421
Contributors: Jordan Satler; Kristen K Bernhard; John O Stireman; Carlos A Machado; Derek D Houston; John D Nason; István Mikó
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Inferring processes of coevolutionary diversification in a community of Panamanian strangler figs and associated pollinating wasps*

Evolution
2019-08-08 | Journal article
DOI: 10.1111/evo.13809
Part of ISSN: 1558-5646
Contributors: Jordan Satler; Edward Allen Herre; Charlotte Jandér; Deren Eaton; Carlos A. Machado; Tracy Heath; John D. Nason
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Nature Genetics
2018-01-22 | Journal article
DOI: 10.1038/s41588-018-0040-0
Part of ISSN: 1546-1718
Contributors: Joshua C. Stein; Yeisoo Yu; Dario Copetti; Derrick J. Zwickl; Li Zhang; Chengjun Zhang; Kapeel Chougule; Dongying Gao; Aiko Iwata; Jose Luis Goicoechea et al.
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Evolution of GSTD1 in Cactophilic Drosophila.

Journal of molecular evolution
2017-06-28 | Journal article
DOI: 10.1007/s00239-017-9798-4
PMID: 28660301
Contributors: López-Olmos K; Markow TA; Machado CA
Source: Self-asserted source
Carlos Machado

Genome Evolution in Three Species of Cactophilic<i>Drosophila</i>

G3 Genes|Genomes|Genetics
2016-10-01 | Journal article
DOI: 10.1534/g3.116.033779
Part of ISSN: 2160-1836
Contributors: Alejandro Sanchez-Flores; Fernando Peñaloza; Javier Carpinteyro-Ponce; Nestor Nazario-Yepiz; Cei Abreu-Goodger; Carlos A Machado; Therese Ann Markow
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus<i>Drosophila</i>

Genome Biology and Evolution
2016-05-18 | Journal article
DOI: 10.1093/gbe/evw116
Part of ISSN: 1759-6653
Contributors: Kevin G. Nyberg; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Lack of genetic isolation by distance, similar genetic structuring but different demographic histories in a fig‐pollinating wasp mutualism

Molecular Ecology
2015-11-25 | Journal article
DOI: 10.1111/mec.13438
Part of ISSN: 1365-294X
Contributors: Enwei Tian; John D. Nason; Carlos A. Machado; Linna Zheng; Hui Yu; Finn Kjellberg
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Differences in inferred genome-wide signals of positive selection during the evolution of Trypanosoma cruzi and Leishmania spp. lineages: A result of disparities in host and tissue infection ranges?

Infection, Genetics and Evolution
2015-07 | Journal article
DOI: 10.1016/j.meegid.2015.04.008
Part of ISSN: 1567-1348
Contributors: Carlos A. Flores-López; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Metatranscriptome Analysis of Fig Flowers Provides Insights into Potential Mechanisms for Mutualism Stability and Gall Induction

PLOS ONE
2015-06-19 | Journal article
DOI: 10.1371/journal.pone.0130745
Part of ISSN: 1932-6203
Contributors: Ellen O. Martinson; Jeremiah D. Hackett; Carlos A. Machado; A. Elizabeth Arnold; Carlos López-Vaamonde
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

The incidence and pattern of copollinator diversification in dioecious and monoecious figs

Evolution
2015-01-19 | Journal article
DOI: 10.1111/evo.12584
Part of ISSN: 1558-5646
Contributors: Li‐Yuan Yang; Carlos A. Machado; Xiao‐Dong Dang; Yan‐Qiong Peng; Da‐Rong Yang; Da‐Yong Zhang; Wan‐Jin Liao
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

Nature Genetics
2014-09-01 | Journal article
DOI: 10.1038/ng.3044
Part of ISSN: 1546-1718
Contributors: Muhua Wang; Yeisoo Yu; Georg Haberer; Pradeep Reddy Marri; Chuanzhu Fan; Jose Luis Goicoechea; Andrea Zuccolo; Xiang Song; Dave Kudrna; Jetty S S Ammiraju et al.
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Relative investment in egg load and poison sac in fig wasps: Implications for physiological mechanisms underlying seed and wasp production in figs

Acta Oecologica
2014-05 | Journal article
DOI: 10.1016/j.actao.2013.07.009
Part of ISSN: 1146-609X
Contributors: Ellen O. Martinson; K. Charlotte Jandér; Yan-Qiong Peng; Huan-Huan Chen; Carlos A. Machado; A. Elizabeth Arnold; Edward Allen Herre
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Diversity, Molecular Level

Encyclopedia of Biodiversity
2013 | Book chapter
DOI: 10.1016/b978-0-12-384719-5.00282-3
Part of ISBN: 9780123847201
Contributors: Carlos A. Machado; Marcos A. Antezana
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Transcriptome Profiling of<i>Drosophila</i>Interspecific Hybrids: Insights into Mechanisms of Regulatory Divergence and Hybrid Dysfunction

Polyploid and Hybrid Genomics
2013-04-04 | Other
DOI: 10.1002/9781118552872.ch2
ISBN: 9781118552872
Contributors: José M. Ranz; Shu‐Dan Yeh; Kevin G. Nyberg; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2012 – 30 September 2012

Molecular Ecology Resources
2012-11-26 | Journal article
DOI: 10.1111/1755-0998.12035
Part of ISSN: 1755-0998
Contributors: Molecular Ecology Resources Primer Development Consortium; Adam Ahanchédé; José E. F. Alfaya; L. W. Andersen; Didier Azam; Ma. Anita M. Bautista; Anne‐Laure Besnard; Gregorio Bigatti; Anthony Bouétard; Marie‐Agnès Coutellec et al.
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Anonymous and EST‐based microsatellite DNA markers that transfer broadly across the fig tree genus (<i>Ficus</i>, Moraceae)

American Journal of Botany
2012-08 | Journal article
DOI: 10.3732/ajb.1200032
Part of ISSN: 1537-2197
Contributors: Katrin Heer; Carlos A. Machado; Anna G. Himler; Edward Allen Herre; Elisabeth K. V. Kalko; Christopher W. Dick
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Culture-Free Survey Reveals Diverse and Distinctive Fungal Communities Associated with Developing Figs (Ficus spp.) in Panama

Microbial Ecology
2012-06-23 | Journal article
DOI: 10.1007/s00248-012-0079-x
Part of ISSN: 1432-184X
Contributors: Ellen O. Martinson; Edward Allen Herre; Carlos A. Machado; A. Elizabeth Arnold
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Transcriptome of the adult female malaria mosquito vector Anopheles albimanus

BMC Genomics
2012-05-30 | Journal article
DOI: 10.1186/1471-2164-13-207
Part of ISSN: 1471-2164
Contributors: Jesús Martínez-Barnetche; Rosa E Gómez-Barreto; Marbella Ovilla-Muñoz; Juan Téllez-Sosa; David E García López; Rhoel R Dinglasan; Ceereena Ubaida Mohien; Robert M MacCallum; Seth N Redmond; John G Gibbons et al.
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Analyses of 32 Loci Clarify Phylogenetic Relationships among Trypanosoma cruzi Lineages and Support a Single Hybridization prior to Human Contact

PLoS Neglected Tropical Diseases
2011-08-02 | Journal article
DOI: 10.1371/journal.pntd.0001272
Part of ISSN: 1935-2735
Contributors: Carlos A. Flores-López; Carlos A. Machado; Peter J. Myler
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Enrichment of mRNA-like Noncoding RNAs in the Divergence of Drosophila Males

Molecular Biology and Evolution
2010-11-01 | Journal article
DOI: 10.1093/molbev/msq293
Part of ISSN: 1537-1719
Contributors: Z.-F. Jiang; D. A. Croshaw; Y. Wang; J. Hey; C. A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Host specificity, phenotype matching and the evolution of reproductive isolation in a coevolved plant–pollinator mutualism

Molecular Ecology
2009-12 | Journal article
DOI: 10.1111/j.1365-294x.2009.04429.x
Part of ISSN: 1365-294X
Contributors: ANNA G. HIMLER; CARLOS A. MACHADO
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Evolution of Sex-Dependent Gene Expression in Three Recently Diverged Species of Drosophila

Genetics
2009-11-01 | Journal article
DOI: 10.1534/genetics.109.105775
Part of ISSN: 1943-2631
Contributors: Zi-Feng Jiang; Carlos A Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Molecular dating and biogeography of fig-pollinating wasps

Molecular Phylogenetics and Evolution
2009-09 | Journal article
DOI: 10.1016/j.ympev.2009.05.028
Part of ISSN: 1055-7903
Contributors: Carlos Lopez-Vaamonde; Niklas Wikström; Karl M. Kjer; George D. Weiblen; Jean Yves Rasplus; Carlos A. Machado; James M. Cook
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Multi-locus phylogenetic analysis of neotropical figs does not support co-speciation with the pollinators: the importance of systematic scale in fig/wasp cophylogenetic studies

Symbiosis
2008 | Journal article | Formal analysis, Conceptualization, Funding acquisition
Contributors: Andrew P. Jackson; Carlos Machado; Nancy Robbins; Edward Allen Herre
Source: Self-asserted source
Carlos Machado

Evolutionary Ecology of Figs and Their Associates: Recent Progress and Outstanding Puzzles

Annual Review of Ecology, Evolution, and Systematics
2008-12-01 | Journal article
DOI: 10.1146/annurev.ecolsys.37.091305.110232
Part of ISSN: 1545-2069
Contributors: Edward Allen Herre; K. Charlotte Jandér; Carlos Alberto Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps

Genetics
2008-07-01 | Journal article
DOI: 10.1534/genetics.107.086074
Part of ISSN: 1943-2631
Contributors: Stephen W Schaeffer; Arjun Bhutkar; Bryant F McAllister; Muneo Matsuda; Luciano M Matzkin; Patrick M O'Grady; Claudia Rohde; Vera L S Valente; Montserrat Aguadé; Wyatt W Anderson et al.
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Evolution of genes and genomes on the Drosophila phylogeny

Nature
2007-11 | Journal article
DOI: 10.1038/nature06341
Part of ISSN: 1476-4687
Contributors: Drosophila 12 Genomes Consortium
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Divergence Between the <i>Drosophila pseudoobscura</i> and <i>D. persimilis</i> Genome Sequences in Relation to Chromosomal Inversions

Genetics
2007-11-01 | Journal article
DOI: 10.1534/genetics.107.070672
Part of ISSN: 1943-2631
Contributors: Mohamed A F Noor; David A Garfield; Stephen W Schaeffer; Carlos A Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

The survival of PCR-amplifiable DNA in cow leather

Journal of Archaeological Science
2007-05 | Journal article
DOI: 10.1016/j.jas.2006.09.002
Part of ISSN: 0305-4403
Contributors: Annick Vuissoz; Michael Worobey; Nancy Odegaard; Michael Bunce; Carlos A. Machado; Niels Lynnerup; Elizabeth E. Peacock; M. Thomas P. Gilbert
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Multilocus nuclear sequences reveal intra‐ and interspecific relationships among chromosomally polymorphic species of cactophilic <i>Drosophila</i>

Molecular Ecology
2007-05-25 | Journal article
DOI: 10.1111/j.1365-294x.2007.03325.x
Part of ISSN: 1365-294X
Contributors: CARLOS A. MACHADO; LUCIANO M. MATZKIN; LAURA K. REED; THERESE A. MARKOW
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Host‐specificity and coevolution among pollinating and nonpollinating New World fig wasps

Molecular Ecology
2007-04-13 | Journal article
DOI: 10.1111/j.1365-294x.2007.03278.x
Part of ISSN: 1365-294X
Contributors: WENDY A. MARUSSICH; CARLOS A. MACHADO
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Evaluation of the Genomic Extent of Effects of Fixed Inversion Differences on Intraspecific Variation and Interspecific Gene Flow in <i>Drosophila pseudoobscura</i> and <i>D. persimilis</i>

Genetics
2007-03-01 | Journal article
DOI: 10.1534/genetics.106.064758
Part of ISSN: 1943-2631
Contributors: Carlos A Machado; Tamara S Haselkorn; Mohamed A F Noor
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Functional genomics of cactus host shifts in <i> Drosophila mojavensis</i>

Molecular Ecology
2006-09-06 | Journal article
DOI: 10.1111/j.1365-294x.2006.03102.x
Part of ISSN: 1365-294X
Contributors: LUCIANO M. MATZKIN; THOMAS D. WATTS; BENJAMIN G. BITLER; CARLOS A. MACHADO; THERESE A. MARKOW
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Uncovering evolutionary patterns of gene expression using microarrays

Trends in Ecology &amp; Evolution
2006-01 | Journal article
DOI: 10.1016/j.tree.2005.09.002
Part of ISSN: 0169-5347
Contributors: José M. Ranz; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

60 million years of co-divergence in the fig–wasp symbiosis

Proceedings of the Royal Society B: Biological Sciences
2005-09-27 | Journal article
DOI: 10.1098/rspb.2005.3249
Part of ISSN: 1471-2954
Contributors: Nina Rønsted; George D Weiblen; James M Cook; Nicolas Salamin; Carlos A Machado; Vincent Savolainen
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism

Proceedings of the National Academy of Sciences
2005-04-25 | Journal article
DOI: 10.1073/pnas.0501840102
Part of ISSN: 1091-6490
Contributors: Carlos A. Machado; Nancy Robbins; M. Thomas P. Gilbert; Edward Allen Herre
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

Inbreeding and population structure in two pairs of cryptic fig wasp species

Molecular Ecology
2004-03-12 | Journal article
DOI: 10.1111/j.1365-294x.2004.02158.x
Part of ISSN: 1365-294X
Contributors: Drude Molbo; Carlos A. Machado; Edward Allen Herre; Laurent Keller
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

The study of structured populations — new hope for a difficult and divided science

Nature Reviews Genetics
2003-07 | Journal article
DOI: 10.1038/nrg1112
Part of ISSN: 1471-0064
Contributors: Jody Hey; Carlos A. Machado
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search

The causes of phylogenetic conflict in a classic<i>Drosophila</i>species group

Proceedings of the Royal Society of London. Series B: Biological Sciences
2003-06-07 | Journal article
DOI: 10.1098/rspb.2003.2333
Part of ISSN: 1471-2954
Contributors: C. A. Machado; J. Hey
Source: Self-asserted source
Carlos Machado via Crossref Metadata Search
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Page 1 of 2

Peer review (2 reviews for 2 publications/grants)

Review activity for American journal of botany. (1)
Review activity for Molecular genetics and genomics. (1)
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