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Scopus Author ID: 55241800200

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Employment (1)

DNAnexus Inc: Mountain View, CA, US

2015-10-05 to present | Principal Scientist/Scientific Community Manager (Research)
Employment
Source: Self-asserted source
Arkarachai Fungtammasan

Education and qualifications (1)

Penn State: University Park, PA, US

2009-08-23 to 2015-10-02 | Bioinformatics and Genomics (Integrative Bioscience)
Education
Source: Self-asserted source
Arkarachai Fungtammasan

Professional activities (1)

Fulbright Association: Washington, DC, US

2009-07-23 to 2010-12-31
Membership
Source: Self-asserted source
Arkarachai Fungtammasan

Works (14)

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

Nature Methods
2022-06 | Journal article
DOI: 10.1038/s41592-022-01440-3
Contributors: Ann M. Mc Cartney; Kishwar Shafin; Michael Alonge; Andrey V. Bzikadze; Giulio Formenti; Arkarachai Fungtammasan; Kerstin Howe; Chirag Jain; Sergey Koren; Glennis A. Logsdon et al.
Source: check_circle
Crossref

Ten simple rules for large-scale data processing

PLOS Computational Biology
2022-02-10 | Journal article
DOI: 10.1371/journal.pcbi.1009757
Contributors: Arkarachai Fungtammasan; Alexandra Lee; Jaclyn Taroni; Kurt Wheeler; Chen-Shan Chin; Sean Davis; Casey Greene
Source: check_circle
Crossref

Chromosome-scale, haplotype-resolved assembly of human genomes

Nature Biotechnology
2021 | Journal article
DOI: 10.1038/s41587-020-0711-0
EID:

2-s2.0-85097220153

Part of ISSN: 15461696 10870156
Contributors: Garg, S.; Fungtammasan, A.; Carroll, A.; Chou, M.; Schmitt, A.; Zhou, X.; Mac, S.; Peluso, P.; Hatas, E.; Ghurye, J. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Genome Biology
2021 | Journal article
DOI: 10.1186/s13059-021-02336-9
EID:

2-s2.0-85105004099

Part of ISSN: 1474760X 14747596
Contributors: Formenti, G.; Rhie, A.; Balacco, J.; Haase, B.; Mountcastle, J.; Fedrigo, O.; Brown, S.; Capodiferro, M.R.; Al-Ajli, F.O.; Ambrosini, R. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

Nature Communications
2021 | Journal article
DOI: 10.1038/s41467-021-21361-7
EID:

2-s2.0-85102515730

Part of ISSN: 20411723
Contributors: Butler, D.; Mozsary, C.; Meydan, C.; Foox, J.; Rosiene, J.; Shaiber, A.; Danko, D.; Afshinnekoo, E.; MacKay, M.; Sedlazeck, F.J. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Towards complete and error-free genome assemblies of all vertebrate species

Nature
2021 | Journal article
DOI: 10.1038/s41586-021-03451-0
EID:

2-s2.0-85103951723

Part of ISSN: 14764687 00280836
Contributors: Rhie, A.; McCarthy, S.A.; Fedrigo, O.; Damas, J.; Formenti, G.; Koren, S.; Uliano-Silva, M.; Chow, W.; Fungtammasan, A.; Kim, J. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Reference genome and demographic history of the most endangered marine mammal, the vaquita

Molecular Ecology Resources
2021-05 | Journal article
DOI: 10.1111/1755-0998.13284
Contributors: Phillip A. Morin; Frederick I. Archer; Catherine D. Avila; Jennifer R. Balacco; Yury V. Bukhman; William Chow; Olivier Fedrigo; Giulio Formenti; Julie A. Fronczek; Arkarachai Fungtammasan et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications
2020 | Journal article
DOI: 10.1038/s41467-020-18564-9
EID:

2-s2.0-85091299884

Part of ISSN: 20411723
Contributors: Chin, C.-S.; Wagner, J.; Zeng, Q.; Garrison, E.; Garg, S.; Fungtammasan, A.; Rautiainen, M.; Aganezov, S.; Kirsche, M.; Zarate, S. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Effect of sequence depth and length in long-read assembly of the maize inbred NC358

Nature Communications
2020 | Journal article
DOI: 10.1038/s41467-020-16037-7
EID:

2-s2.0-85084721264

Part of ISBN:

20411723
Contributors: Ou, S.; Liu, J.; Chougule, K.M.; Fungtammasan, A.; Seetharam, A.S.; Stein, J.C.; Llaca, V.; Manchanda, N.; Gilbert, A.M.; Wei, S. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology
2019 | Journal article
DOI: 10.1038/s41587-019-0217-9
EID:

2-s2.0-85070802882

Part of ISBN:

15461696 10870156
Contributors: Wenger, A.M.; Peluso, P.; Rowell, W.J.; Chang, P.-C.; Hall, R.J.; Concepcion, G.T.; Ebler, J.; Fungtammasan, A.; Kolesnikov, A.; Olson, N.D. et al.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

How well can we create phased, diploid, human genomes?: An assessment of FALCON-Unzip phasing using a human trio

2018-06-25 | Preprint
DOI: 10.1101/262196
Source: Self-asserted source
Arkarachai Fungtammasan

Reverse Transcription Errors and RNA-DNA Differences at Short Tandem Repeats

Molecular Biology and Evolution
2016 | Journal article
DOI: 10.1093/molbev/msw139
EID:

2-s2.0-84994121259

Part of ISBN:

15371719 07374038
Contributors: Fungtammasan, A.; Tomaszkiewicz, M.; Campos-Sánchez, R.; Eckert, K.A.; Degiorgio, M.; Makova, K.D.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

Genome Research
2015 | Journal article
DOI: 10.1101/gr.185892.114
EID:

2-s2.0-84929660260

Part of ISBN:

15495469 10889051
Contributors: Fungtammasan, A.; Ananda, G.; Hile, S.E.; Su, M.S.-W.; Sun, C.; Harris, R.; Medvedev, P.; Eckert, K.; Makova, K.D.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

Genome Research
2012 | Journal article
DOI: 10.1101/gr.134395.111
EID:

2-s2.0-84861883036

Part of ISBN:

10889051 15495469
Contributors: Fungtammasan, A.; Walsh, E.; Chiaromonte, F.; Eckert, K.A.; Makova, K.D.
Source: Self-asserted source
Arkarachai Fungtammasan via Scopus - Elsevier

Peer review (1 review for 1 publication/grant)

Review activity for Genome biology. (1)
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