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Employment (2)

Baylor College of Medicine: Houston, TX, US

2021-09-01 to present | PostDoc (Human Genome Sequencing Center)
Employment
Source: Self-asserted source
Luis F Paulin

Colegio de la Frontera Norte: Tijuana, Tijuana, MX

2019-11-01 to 2021-08-31 | Coordinador de Estadística (Coordinación de Estadística)
Employment
Source: Self-asserted source
Luis F Paulin

Education and qualifications (2)

University of Vienna: Vienna, Vienna, AT

2014-04-01 to 2019-03-31 | PhD (Center for Integrative Bioinformatics Vienna)
Education
Source: Self-asserted source
Luis F Paulin

Universidad Nacional Autónoma de México Campus Morelos: Cuernavaca, Morelos, MX

2010-08 to 2013-03 | Master (Instituto de Biotecnología, Departamento de Genética del Desarrollo y Fisiología Molecular)
Education
Source: Self-asserted source
Luis F Paulin

Works (18)

Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T

Genome Research
2025-03-17 | Journal article
DOI: 10.1101/gr.279352.124
Contributors: Luis F. Paulin; Jeremy Fan; Kieran O'Neill; Erin Pleasance; Vanessa L. Porter; Steven J.M. Jones; Fritz J. Sedlazeck
Source: check_circle
Crossref

Detection of mosaic and population-level structural variants with Sniffles2

Nature Biotechnology
2024-10 | Journal article
DOI: 10.1038/s41587-023-02024-y
Contributors: Moritz Smolka; Luis F. Paulin; Christopher M. Grochowski; Dominic W. Horner; Medhat Mahmoud; Sairam Behera; Ester Kalef-Ezra; Mira Gandhi; Karl Hong; Davut Pehlivan et al.
Source: check_circle
Crossref

Publisher Correction: Detection of mosaic and population-level structural variants with Sniffles2

Nature Biotechnology
2024-10 | Journal article
DOI: 10.1038/s41587-024-02141-2
Contributors: Moritz Smolka; Luis F. Paulin; Christopher M. Grochowski; Dominic W. Horner; Medhat Mahmoud; Sairam Behera; Ester Kalef-Ezra; Mira Gandhi; Karl Hong; Davut Pehlivan et al.
Source: check_circle
Crossref

The benefit of a complete reference genome for cancer structural variant analysis

2024-03-18 | Preprint
DOI: 10.1101/2024.03.15.24304369
Contributors: Luis F Paulin; Jeremy Fan; Kieran O’Neill; Erin Pleasance; Vanessa L. Porter; Steven J.M Jones; Fritz J. Sedlazeck
Source: check_circle
Crossref

Improved sequence mapping using a complete reference genome and lift-over

Nature Methods
2024-01 | Journal article
DOI: 10.1038/s41592-023-02069-6
Contributors: Nae-Chyun Chen; Luis F. Paulin; Fritz J. Sedlazeck; Sergey Koren; Adam M. Phillippy; Ben Langmead
Source: check_circle
Crossref

Sniffles2 methods

protocols.io
2023-10-02 | Journal article | Author
DOI: dx.doi.org/10.17504/protocols.io.14egn34qyl5d/v1
Contributors: Luis F Paulin; Fritz Sedlazeck
Source: check_circle
protocols.io

Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk

2023-04-27 | Preprint
DOI: 10.1101/2023.04.24.538128
Contributors: S. Behera; J. R. Belyeu; X. Chen; L. F. Paulin; N.Q.H. Nguyen; E. Newman; M. Mahmoud; V. K. Menon; Q. Qi; P. Joshi et al.
Source: check_circle
Crossref

SVhound: detection of regions that harbor yet undetected structural variation

BMC Bioinformatics
2023-01-20 | Journal article
DOI: 10.1186/s12859-022-05046-6
Part of ISSN: 1471-2105
Contributors: Luis F. Paulin; Muthuswamy Raveendran; R. Alan Harris; Jeffrey Rogers; Arndt von Haeseler; Fritz J. Sedlazeck
Source: Self-asserted source
Luis F Paulin

The complete sequence of a human Y chromosome

2022-12-01 | Preprint
DOI: 10.1101/2022.12.01.518724
Contributors: Arang Rhie; Sergey Nurk; Monika Cechova; Savannah Hoyt; Dylan Taylor; Nicolas Altemose; Paul W. Hook; Sergey Koren; Mikko Rautiainen; Ivan Alexandrov et al.
Source: Self-asserted source
Luis F Paulin

Phylogenetic analysis of avian influenza viruses from migratory waterfowl at Pacific wetlands

Veterinaria México OA
2022-08-31 | Journal article
DOI: 10.22201/fmvz.24486760e.2022.702
Contributors: Pavel Isa Haspra; Luis Felipe Paulin; Jesús Hernández; Maricela Montalvo-Corral; Susana López; Carlos F. Arias
Source: check_circle
Crossref

Fixing reference errors efficiently improves sequencing results

2022-07-20 | Preprint
DOI: 10.1101/2022.07.18.500506
Contributors: S. Behera; J. LeFaive; P. Orchard; M. Mahmoud; L. F. Paulin; J. Farek; D. C. Soto; Stephen C.J. Parker; A. V. Smith; M. Y. Dennis et al.
Source: check_circle
Crossref

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 3 approved with reservations]

2022-05-16 | Journal article
DOI: 10.12688/f1000research.110194.1
Part of ISSN: 2046-1402
Funded by GRANT_NUMBER:

1233221N

Funded by GRANT_NUMBER:

186397

Funded by GRANT_NUMBER:

202106180022

Funded by GRANT_NUMBER:

325874

Funded by GRANT_NUMBER:

DEB-2045343
Contributors: Kimberly Walker; Divya Kalra; Rebecca Lowdon; Guangyi Chen; David Molik; Daniela C. Soto; Fawaz Dabbaghie; Ahmad Al Khleifat; Medhat Mahmoud; Luis F Paulin et al.
Source: check_circle
F1000
grade
Preferred source (of 2)‎

Improved sequence mapping using a complete reference genome and lift-over

2022-04-28 | Preprint
DOI: 10.1101/2022.04.27.489683
Contributors: Nae-Chyun Chen; Luis F Paulin; Fritz J Sedlazeck; Sergey Koren; Adam M Phillippy; Ben Langmead
Source: check_circle
Crossref

Comprehensive Structural Variant Detection: From Mosaic to Population-Level

2022-04-05 | Preprint
DOI: 10.1101/2022.04.04.487055
Contributors: Moritz Smolka; Luis F. Paulin; Christopher M. Grochowski; Dominic W. Horner; Medhat Mahmoud; Sairam Behera; Ester Kalef-Ezra; Mira Gandhi; Karl Hong; Davut Pehlivan et al.
Source: check_circle
Crossref

ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants

The Plant Cell
2021-07-02 | Journal article
DOI: 10.1093/plcell/koab045
Contributors: Marie-Therese Kurzbauer; Michael Peter Janisiw; Luis F Paulin; Ignacio Prusén Mota; Konstantin Tomanov; Ondrej Krsicka; Arndt von Haeseler; Veit Schubert; Peter Schlögelhofer
Source: check_circle
Crossref

Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity

Nature Communications
2020-09-25 | Journal article
DOI: 10.1038/s41467-020-18693-1
Contributors: Eva Janisiw; Marilina Raices; Fabiola Balmir; Luis F. Paulin; Antoine Baudrimont; Arndt von Haeseler; Judith L. Yanowitz; Verena Jantsch; Nicola Silva
Source: check_circle
Crossref

Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance.

PLoS biology
2016-03-24 | Journal article
DOI: 10.1371/journal.pbio.1002412
PMID: 27011106
PMC: PMC4807110
Source: Self-asserted source
Luis F Paulin

PhyloFlu, a DNA microarray for determining the phylogenetic origin of influenza A virus gene segments and the genomic fingerprint of viral strains

Journal of clinical microbiology
2014 | Journal article
DOI: 10.1128/JCM.03134-13
Source: Self-asserted source
Luis F Paulin
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