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Scopus Author ID: 13006359500

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Works (27)

digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes

BMC Bioinformatics
2021 | Journal article
DOI: 10.1186/s12859-021-04177-6
EID:

2-s2.0-85106593338

Part of ISSN: 14712105
Contributors: Puterová, J.; Martínek, T.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier
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EnzymeMiner: Automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities

Nucleic Acids Research
2021 | Journal article
DOI: 10.1093/NAR/GKAA372
EID:

2-s2.0-85085984246

Part of ISSN: 13624962 03051048
Contributors: Hon, J.; Borko, S.; Stourac, J.; Prokop, Z.; Zendulka, J.; Bednar, D.; Martinek, T.; Damborsky, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

SoluProt: prediction of soluble protein expression in Escherichia coli

Bioinformatics
2021 | Journal article
DOI: 10.1093/bioinformatics/btaa1102
EID:

2-s2.0-85100389869

Part of ISSN: 13674811 13674803
Contributors: Hon, J.; Marusiak, M.; Martinek, T.; Kunka, A.; Zendulka, J.; Bednar, D.; Damborsky, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

SoluProt: Prediction of Soluble Protein Expression in Escherichia coli

ChemRxiv
2020 | Other
DOI: 10.26434/chemrxiv.13047818.v1
EID:

2-s2.0-85099008127

Part of ISSN: 25732293
Contributors: Hon, J.; Marusiak, M.; Martinek, T.; Kunka, A.; Zendulka, J.; Bednar, D.; Damborsky, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

HotSpot Wizard 3.0: Web server for automated design of mutations and smart libraries based on sequence input information

Nucleic Acids Research
2018 | Journal article
DOI: 10.1093/nar/gky417
EID:

2-s2.0-85050851556

Part of ISSN: 13624962 03051048
Contributors: Sumbalova, L.; Stourac, J.; Martinek, T.; Bednar, D.; Damborsky, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

FireProt: web server for automated design of thermostable proteins

Nucleic Acids Research
2017 | Journal article
DOI: 10.1093/nar/gkx285
EID:

2-s2.0-85023195078

Part of ISSN: 13624962 03051048
Contributors: Musil, M.; Stourac, J.; Bendl, J.; Brezovsky, J.; Prokop, Z.; Zendulka, J.; Martinek, T.; Bednar, D.; Damborsky, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R

Bioinformatics (Oxford, England)
2017 | Journal article
DOI: 10.1093/bioinformatics/btx413
EID:

2-s2.0-85043369900

Part of ISSN: 13674811
Contributors: Hon, J.; Martínek, T.; Zendulka, J.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Satellite DNA and transposable elements in Seabuckthorn (Hippophae rhamnoides), a dioecious plant with small Y and large x chromosomes

Genome Biology and Evolution
2017 | Journal article
DOI: 10.1093/gbe/evw303
EID:

2-s2.0-85016261483

Part of ISSN: 17596653
Contributors: Puterova, J.; Razumova, O.; Martinek, T.; Alexandrov, O.; Divashuk, M.; Kubat, Z.; Hobza, R.; Karlov, G.; Kejnovsky, E.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

P53 specifically binds triplex DNA in vitro and in cells

PLoS ONE
2016 | Journal article
DOI: 10.1371/journal.pone.0167439
EID:

2-s2.0-85000868554

Part of ISSN: 19326203
Contributors: Brázdová, M.; Tichý, V.; Helma, R.; Bažantová, P.; Polášková, A.; Krejčí, A.; Petr, M.; Navrátilová, L.; Tichá, O.; Nejedlý, K. et al.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Guanine quadruplexes are formed by specific regions of human transposable elements

BMC Genomics
2014 | Journal article
DOI: 10.1186/1471-2164-15-1032
EID:

2-s2.0-84928238522

Part of ISSN: 14712164
Contributors: Lexa, M.; Steflova, P.; Martinek, T.; Vorlickova, M.; Vyskot, B.; Kejnovsky, E.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Uneven distribution of potential triplex sequences in the human genome: In silico study using the R/bioconductor package triplex

BIOINFORMATICS 2014 - 5th Int. Conf. on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 7th Int. Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2014
2014 | Conference paper
DOI: 10.5220/0004824100800088
EID:

2-s2.0-84902320984

Part of ISBN: 9789897580123
Contributors: Lexa, M.; Martínek, T.; Brázdová, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Triplex: An R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences

Bioinformatics
2013 | Journal article
DOI: 10.1093/bioinformatics/btt299
EID:

2-s2.0-84880520624

Part of ISSN: 13674803 14602059
Contributors: Hon, J.; Martínek, T.; Rajdl, K.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

A dynamic programming algorithm for identification of triplex-forming sequences

Bioinformatics
2011 | Journal article
DOI: 10.1093/bioinformatics/btr439
EID:

2-s2.0-80052776231

Part of ISSN: 13674803 14602059
Contributors: Lexa, M.; Martínek, T.; Burgetová, I.; Kopeček, D.; Brázdová, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Architecture model for approximate tandem repeat detection

Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors
2011 | Conference paper
DOI: 10.1109/ASAP.2011.6043277
EID:

2-s2.0-80055077169

Part of ISBN: 9781457712920
Part of ISSN: 10636862
Contributors: Martínek, T.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Hardware acceleration of approximate tandem repeat detection

Proceedings - IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2010
2010 | Conference paper
DOI: 10.1109/FCCM.2010.21
EID:

2-s2.0-77954288222

Part of ISBN: 9780769540566
Contributors: Martínek, T.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Architecture model for approximate palindrome detection

Proceedings of the 2009 IEEE Symposium on Design and Diagnostics of Electronic Circuits and Systems, DDECS 2009
2009 | Conference paper
DOI: 10.1109/DDECS.2009.5012105
EID:

2-s2.0-70349337053

Part of ISBN: 9781424433391
Contributors: Mart́inek, T.; Vožeńilek, J.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Evolving image operators directly in hardware

Eurasip Book Series on Signal Processing and Communications
2008 | Book
EID:

2-s2.0-73849134655

ISBN: 9789774540011
Part of ISSN: 16872789 16872797
Contributors: Sekanina, L.; Martínek, T.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

GICS: Generic interconnection system

Proceedings - 2008 International Conference on Field Programmable Logic and Applications, FPL
2008 | Conference paper
DOI: 10.1109/FPL.2008.4629942
EID:

2-s2.0-54949111367

Part of ISBN: 9781424419616
Contributors: Málek, T.; Martínek, T.; Kořenek, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Hardware acceleration of approximate palindromes searching

Proceedings of the 2008 International Conference on Field-Programmable Technology, ICFPT 2008
2008 | Conference paper
DOI: 10.1109/FPT.2008.4762367
EID:

2-s2.0-63049093021

Part of ISBN: 9781424427963
Contributors: Martínek, T.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

NetCOPE: Platform for rapid development of network applications

Proceedings - 2008 IEEE Workshop on Design and Diagnostics of Electronic Circuits and Systems, DDECS
2008 | Conference paper
DOI: 10.1109/DDECS.2008.4538789
EID:

2-s2.0-50649094279
Contributors: Martínek, T.; Košek, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Automatic generation of circuits for approximate string matching

Proceedings of the 2007 IEEE Workshop on Design and Diagnostics of Electronic Circuits and Systems, DDECS
2007 | Conference paper
DOI: 10.1109/DDECS.2007.4295281
EID:

2-s2.0-46449116191

Part of ISBN: 1424411610 9781424411610
Contributors: Martínek, T.; Fučík, O.; Beck, P.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Genomic PCR simulation with hardware-accelerated approximate sequence matching

21st European Conference on Modelling and Simulation: Simulations in United Europe, ECMS 2007
2007 | Conference paper
DOI: 10.7148/2007-0333
EID:

2-s2.0-84857588303

Part of ISBN: 0955301823 9780955301827
Contributors: Lexa, M.; Martínek, T.; Beck, P.; Fučík, O.; Valle, G.; Zara, I.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Online protocol testing for FPGA based fault tolerant systems

Proceedings - 10th Euromicro Conference on Digital System Design Architectures, Methods and Tools, DSD 2007
2007 | Conference paper
DOI: 10.1109/DSD.2007.4341541
EID:

2-s2.0-47749103725

Part of ISBN: 076952978X 9780769529783
Contributors: Tobola, J.; Kotasek, Z.; Korenek, J.; Martinek, T.; Straka, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

A flexible technique for the automatic design of approximate string matching architectures

2006 IEEE Design and Diagnostics of Electronic Circuits and systems
2006 | Conference paper
DOI: 10.1109/DDECS.2006.1649579
EID:

2-s2.0-33847133874

Part of ISBN: 1424401852 9781424401857
Contributors: Martínek, T.; Kořenek, J.; Fučík, O.; Lexa, M.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Extrinsic and intrinsic evolution of multifunctional combinational modules

2006 IEEE Congress on Evolutionary Computation, CEC 2006
2006 | Conference paper
EID:

2-s2.0-34547364478

Part of ISBN: 0780394879 9780780394872
Contributors: Sekanina, L.; Martinek, T.; Gajda, Z.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

Network monitoring adaptor for 10Gbps technology using FPGA

CESNET Conference 2006 - 1st CESNET Conference on Advanced Communications and Grids, Proceedings
2006 | Conference paper
EID:

2-s2.0-84925447706

Part of ISBN: 8023965336
Contributors: Martínek, T.; Kořenek, J.; Novotný, J.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier

An evolvable image filter: Experimental evaluation of a complete hardware implementation in FPGA

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
2005 | Conference paper
DOI: 10.1007/11549703_8
EID:

2-s2.0-33646010049

Part of ISBN: 3540287361 9783540287360
Part of ISSN: 16113349 03029743
Contributors: Martínek, T.; Sekanina, L.
Source: Self-asserted source
Tomáš Martínek via Scopus - Elsevier
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