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Employment (1)

Harvard School of Public Health: MA, MA, US

2021-11 to present | Postdoctoral Fellow (Biostatistics)
Employment
Source: Self-asserted source
Viola Fanfani

Education and qualifications (2)

The University of Edinburgh: Edinburgh, Edinburgh, GB

2018-01-06 to 2021-08 | PhD student
Education
Source: Self-asserted source
Viola Fanfani

University of Pisa: Pisa, Toscana, IT

2014-05-01 to 2017-06-16 | MSc Biomedical Engineering (Engineering)
Education
Source: Self-asserted source
Viola Fanfani

Works (20)

Identifying Sex Differences in Lung Adenocarcinoma Using Multi-Omics Integrative Protein Signaling Networks

2025-02-07 | Preprint
DOI: 10.1101/2025.02.03.636354
Contributors: Chen Chen; Enakshi Saha; Jonas Fischer; Marouen Ben Guebila; Viola Fanfani; Katherine H. Shutta; Megha Padi; Kimberly Glass; Dawn L. DeMeo; Camila M. Lopes-Ramos et al.
Source: check_circle
Crossref

Reproducible processing of TCGA regulatory networks

2024-11-07 | Preprint
DOI: 10.1101/2024.11.05.622163
Contributors: Viola Fanfani; Katherine H. Shutta; Panagiotis Mandros; Jonas Fischer; Enakshi Saha; Soel Micheletti; Chen Chen; Marouen Ben Guebila; Camila M. Lopes-Ramos; John Quackenbush
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Crossref

Bayesian inference of sample-specific coexpression networks

Genome Research
2024-09 | Journal article
DOI: 10.1101/gr.279117.124
Contributors: Enakshi Saha; Viola Fanfani; Panagiotis Mandros; Marouen Ben Guebila; Jonas Fischer; Katherine H. Shutta; Dawn L. DeMeo; Camila M. Lopes-Ramos; John Quackenbush
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Crossref

Selective loss of Y chromosomes in lung adenocarcinoma modulates the tumor immune environment through cancer/testis antigens

2024-09-22 | Preprint
DOI: 10.1101/2024.09.19.613876
Contributors: Jonas Fischer; Katherine H. Shutta; Chen Chen; Viola Fanfani; Enakshi Saha; Panagiotis Mandros; Marouen Ben Guebila; Joanne Xiu; Jorge Nieva; Stephen Liu et al.
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Crossref

node2vec2rank: Large Scale and Stable Graph Differential Analysis via Multi-Layer Node Embeddings and Ranking

2024-06-17 | Preprint
DOI: 10.1101/2024.06.16.599201
Contributors: Panagiotis Mandros; Ian Gallagher; Viola Fanfani; Chen Chen; Jonas Fischer; Anis Ismail; Lauren Hsu; Enakshi Saha; Derrick K. DeConti; John Quackenbush
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Crossref

Gene regulatory Networks Reveal Sex Difference in Lung Adenocarcinoma

2023-09-24 | Preprint
DOI: 10.1101/2023.09.22.559001
Contributors: Enakshi Saha; Marouen Ben Guebila; Viola Fanfani; Jonas Fischer; Katherine H. Shutta; Panagiotis Mandros; Dawn L. DeMeo; John Quackenbush; Camila M. Lopes-Ramos
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Crossref

Data from The Landscape of the Heritable Cancer Genome

2023-03-31 | Preprint
DOI: 10.1158/0008-5472.c.6512527
Contributors: Viola Fanfani; Luca Citi; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
Source: check_circle
Crossref

Data from The Landscape of the Heritable Cancer Genome

2023-03-31 | Preprint
DOI: 10.1158/0008-5472.c.6512527.v1
Contributors: Viola Fanfani; Luca Citi; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
Source: check_circle
Crossref

Supplementary Materials from The Landscape of the Heritable Cancer Genome

2023-03-31 | Preprint
DOI: 10.1158/0008-5472.22427035.v1
Contributors: Viola Fanfani; Luca Citi; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
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Crossref

Supplementary Materials from The Landscape of the Heritable Cancer Genome

2023-03-31 | Preprint
DOI: 10.1158/0008-5472.22427035
Contributors: Viola Fanfani; Luca Citi; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
Source: check_circle
Crossref

The Network Zoo: a multilingual package for the inference and analysis of biological networks

2022-05-30 | Preprint
DOI: 10.1101/2022.05.30.494077
Contributors: Marouen Ben Guebila; Tian Wang; Camila M. Lopes-Ramos; Viola Fanfani; Deborah Weighill; Rebekka Burkholz; Daniel Schlauch; Joseph N. Paulson; Michael Altenbuchinger; Abhijeet Sonanwane et al.
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Crossref

Manipulating the 3D organization of the largest synthetic yeast chromosome

2022-04-10 | Preprint
DOI: 10.1101/2022.04.09.487066
Contributors: Weimin Zhang; Luciana Lazar-Stefanita; Hitoyoshi Yamashita; Michael J. Shen; Leslie A. Mitchell; Hikaru Kurasawa; Evgenii Lobzaev; Viola Fanfani; Max A. B. Haase; Xiaoji Sun et al.
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Crossref

Mutation landscape of multiple myeloma measurable residual disease: identification of targets for precision medicine

Blood Advances
2022-01-25 | Journal article
DOI: 10.1182/bloodadvances.2020003876
Contributors: Martina Zátopková; Tereza Ševčíková; Viola Fanfani; Zuzana Chyra; Lucie Říhová; Renata Bezděková; David Žihala; Kateřina Growková; Jana Filipová; Lucie Černá et al.
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Crossref

Discovering cancer driver genes and pathways using stochastic block model graph neural networks

2021-06-30 | Other
DOI: 10.1101/2021.06.29.450342
Contributors: Viola Fanfani; Ramon Vinas Torne; Pietro Lio'; Giovanni Stracquadanio
Source: check_circle
Crossref

The Landscape of the Heritable Cancer Genome

Cancer Research
2021-05-15 | Journal article
DOI: 10.1158/0008-5472.CAN-20-3348
Contributors: Viola Fanfani; Luca Citi; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
Source: check_circle
Crossref

PyGNA: a unified framework for geneset network analysis

BMC Bioinformatics
2020-10 | Journal article
DOI: 10.1186/s12859-020-03801-1
Part of ISSN: 1471-2105
Contributors: Viola Fanfani; Fabio Cassano; Giovanni Stracquadanio
Source: Self-asserted source
Viola Fanfani via Crossref Metadata Search

Systematic analysis of the IL ‐17 receptor signalosome reveals a robust regulatory feedback loop

The EMBO Journal
2020-07 | Journal article
DOI: 10.15252/embj.2019104202
Part of ISSN: 0261-4189
Contributors: Helena Draberova; Sarka Janusova; Daniela Knizkova; Tereza Semberova; Michaela Pribikova; Andrea Ujevic; Karel Harant; Sofija Knapkova; Matous Hrdinka; Viola Fanfani et al.
Source: Self-asserted source
Viola Fanfani via Crossref Metadata Search

Dissecting the heritable risk of breast cancer: from statistical methods to susceptibility genes

Seminars in Cancer Biology
2020-06 | Journal article
DOI: 10.1016/j.semcancer.2020.06.001
Part of ISSN: 1044-579X
Contributors: Viola Fanfani; Martina Zatopkova; Adrian L. Harris; Francesco Pezzella; Giovanni Stracquadanio
Source: Self-asserted source
Viola Fanfani via Crossref Metadata Search

A unified framework for geneset network analysis

2019-07-11 | Other
DOI: 10.1101/699926
Contributors: Viola Fanfani; Giovanni Stracquadanio
Source: check_circle
Crossref

Gene-level heritability analysis explains the polygenic architecture of cancer

[]
2019-04-05 | Preprint
DOI: 10.1101/599753
Source: Self-asserted source
Viola Fanfani
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Peer review (2 reviews for 2 publications/grants)

Review activity for BMC bioinformatics (1)
Review activity for British journal of cancer. (1)
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