Personal information

Neuroimaging, fMRI, EEG, PET, Data sharing, reproducibility, pipelines, software
Denmark

Biography

I am a psychologist (MSc in Cognitive Psychology, MRes in Neuropsychology) and I have a PhD in Cognitive Neuropsychology from the university of Toulouse III in France where I worked with Dr JF Demonet and Dr P Celsis at the National Institute for Health and Medical Research (INSERM). During that time I studied, vision, language and dyslexia using EEG and functional MRI. I moved next to Finland working with Prof R. Salmelin at the low temperature laboratory on vision and language. I deepen there my understanding of neurophysiology working with MEG - and started my journey into programming. I moved next to Scotland, 1st at the University of Glasgow (Prof B Belin) where I was respectively post-doc fellow and post-doc RA. While working on categorization mechanisms (voice, language) I was also in charge of building the lab. I next joined the Brain Research Imaging Center at the University of Edinburgh as fMRI lead for SINAPSE (Scottish Imaging Network A Platform for Scientific Excellence) coordinating of some fMRI activities across Scotland. I became Academic Fellow, and Senior Academic Fellow when all imaging activities merged into Edinburgh imaging - being the scientific contact for all functional imaging studies. During that I have been teaching fMRI/EEG/Statistics and researching in the areas of language and categorization with a focus on methods and clinical applications (brain tumours, stroke). Thanks to my ever growing interest in open science, programming and reproducibility (and a fellowship at the Software Sustainability Institute) I am now a Senior Research Software Developer at the Neurobiology Research Unit, Copenhagen University Hospital, Rigshospitalet in Denmark, still working on brain imaging and methods, but also building tools for data sharing and automated, reproducible data analyses.

Activities

Employment (6)

Copenhagen University Hospital, Rigshospitalet: Copenhagen, DK

2021-04-01 to present | Senior Research Software Developer (Neurobiology Research Unit)
Employment
Source: Self-asserted source
Cyril Pernet

University of Edinburgh: Edinburgh, Edinburgh, GB

2016-08-01 to 2021-03-31 | Senior Academic Fellow (Centre for Clinical Brain Sciences)
Employment
Source: Self-asserted source
Cyril Pernet

University of Edinburgh: Edinburgh, Edinburgh, GB

2011-09 to 2016-07-31 | Academic Fellow (Centre for Clinical Brain Sciences)
Employment
Source: Self-asserted source
Cyril Pernet

University of Edinburgh: Edinburgh, Edinburgh, GB

2007-09 to 2011-09 | fMRI lead (SINPASE & Brain Research Imaging Cerntre)
Employment
Source: Self-asserted source
Cyril Pernet

University of Glasgow: Glasgow, Glasgow, GB

2006-01 to 2007-09 | Post-doc (Psychology)
Employment
Source: Self-asserted source
Cyril Pernet

Aalto University Helsinki Institute for Information Technology: Otaniemi, FI

2005-01 to 2005-12 | Post-doc (Low Temperature Laboratory)
Employment
Source: Self-asserted source
Cyril Pernet

Education and qualifications (3)

Université de Toulouse 2: Toulouse, FR

2001-09 to 2004-09 | PhD (INSERM)
Education
Source: Self-asserted source
Cyril Pernet

Université Paul Sabatier Toulouse III UFR PCA: Toulouse, FR

2000-09 to 2001-09 | Research MSc (Neuropsychology) (INSERM)
Education
Source: Self-asserted source
Cyril Pernet

Université de Toulouse 2: Toulouse, FR

2000-09 to 2001-09 | MSc (Cognitive Psychology) (Psychology)
Education
Source: Self-asserted source
Cyril Pernet

Works (50 of 62)

Items per page:
Page 1 of 2

Null hypothesis significance testing: a guide to commonly misunderstood concepts and recommendations for good practice [version 5; referees: 2 approved, 2 not approved]

2017-10-12 | Journal article
Part of ISSN: 2046-1402
Contributors: Cyril Pernet
Source: check_circle
F1000
grade
Preferred source (of 2)‎

Beyond differences in means: robust graphical methods to compare two groups in neuroscience.

The European Journal of Neuroscience
2017-05 | Journal article
Contributors: Rand R Wilcox; Cyril R Pernet; Guillaume A Rousselet
Source: check_circle
ScienceOpen, Inc.
grade
Preferred source (of 2)‎

Beyond differences in means: robust graphical methods to compare two groups in neuroscience

2017-03-27 | Other
Contributors: Guillaume A. Rousselet; Cyril R. Pernet; Rand R. Wilcox
Source: check_circle
Crossref

Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.

Neuroimage
2017-02 | Journal article
Contributors: Joanna M Wardlaw; David Rodriguez; David Alexander Dickie; Dominic E Job; Devasuda Anblagan; Simon R Cox; Aziz Sheikh; Daniel S Marcus; Nick Fox; Paul M Thompson et al.
Source: check_circle
ScienceOpen, Inc.

Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting

International Journal of Medical Informatics
2016-02 | Journal article
Contributors: Cyril R. Pernet; Krzysztof J. Gorgolewski; Dominic Job; David Rodriguez; Amos Storkey; Ian Whittle; Joanna Wardlaw
Source: check_circle
Crossref

The role of brain‐derived neurotrophic factor in learned fear processing: an awake rat fMRI study

Genes, Brain, and Behavior
2016-02 | Journal article
Contributors: J. Hall; M. C. Holmes; M. Day; A. M. Basso; S. Baker; I. Marshall; H. C. Whalley; C. R. Pernet; M. A. Jansen; N. M. Brydges et al.
Source: check_circle
ScienceOpen, Inc.

A structural and functional magnetic resonance imaging dataset of brain tumour patients

Scientific Data
2016-02-02 | Journal article
Contributors: Cyril R. Pernet; Krzysztof J. Gorgolewski; Dominic Job; David Rodriguez; Ian Whittle; Joanna Wardlaw
Source: check_circle
Crossref

A brain imaging repository of normal structural MRI across the life course: Brain Images of Normal Subjects (BRAINS).

Neuroimage
2016-01 | Journal article
Contributors: Joanna M Wardlaw; Susan D Shenkin; Ian J Deary; Roger T Staff; Gordon D Waiter; Trevor Ahearn; Alison D Murray; James P Boardman; Mark E Bastin; Cyril Pernet et al.
Source: check_circle
ScienceOpen, Inc.

Estimating the reproducibility of psychological science

Science
2015 | Journal article
ARXIV:

http://science.sciencemag.org/content/349/6251/aac4716.full.pdf

Source: Self-asserted source
Cyril Pernet

Improving functional magnetic resonance imaging reproducibility.

2015 | Journal article
DOI:

10.1186/s13742-015-0055-8

PMID:

25830019

PMC:

PMC4379514

Contributors: Pernet C; Poline JB
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Hemispheric association and dissociation of voice and speech information processing in stroke

Cortex
2015-10 | Journal article
Contributors: Anna B. Jones; Andrew J. Farrall; Pascal Belin; Cyril R. Pernet
Source: check_circle
Crossref

The human voice areas: Spatial organization and inter-individual variability in temporal and extra-temporal cortices

Neuroimage
2015-10 | Journal article
Contributors: Pascal Belin; Mitchell Valdes-Sosa; Frances Crabbe; David Fleming; Rebecca H. Watson; Patricia E.G. Bestelmeyer; Ian Charest; Krzysztof J. Gorgolewski; Marianne Latinus; Phil McAleer et al.
Source: check_circle
ScienceOpen, Inc.

Cluster-based computational methods for mass univariate analyses of event-related brain potentials/fields: A simulation study

Journal of Neuroscience Methods
2015-07 | Journal article
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Imaging learned fear circuitry in awake mice using fMRI.

2015-05 | Journal article
DOI:

10.1111/ejn.12939

PMID:

25943794

Contributors: Harris AP; Lennen RJ; Marshall I; Jansen MA; Pernet CR; Brydges NM; Duguid IC; Holmes MC
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Misconceptions in the use of the General Linear Model applied to functional MRI: a tutorial for junior neuro-imagers.

Frontiers in neuroscience
2014 | Journal article
DOI:

10.3389/fnins.2014.00001

Source: Self-asserted source
Cyril Pernet

Single-subject analyses of magnetoencephalographic evoked responses to the acoustic properties of affective non-verbal vocalizations.

Frontiers in neuroscience
2014 | Journal article
DOI:

10.3389/fnins.2014.00422

Source: Self-asserted source
Cyril Pernet

Automatic domain-general processing of sound source identity in the left posterior middle frontal gyrus.

Cortex; a journal devoted to the study of the nervous system and behavior
2014-09 | Journal article
DOI:

10.1016/j.cortex.2014.06.005

Source: Self-asserted source
Cyril Pernet

Cluster-based computational methods for mass univariate analyses of event-related brain potentials/fields: A simulation study.

2014-08 | Journal article
PMID:

25128255

Contributors: Pernet CR; Latinus M; Nichols TE; Rousselet GA
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Test-retest reliability of structural brain networks from diffusion MRI.

NeuroImage
2014-02 | Journal article
DOI:

10.1016/j.neuroimage.2013.09.054

Source: Self-asserted source
Cyril Pernet

A test-retest fMRI dataset for motor, language and spatial attention functions.

GigaScience
2013 | Journal article
DOI:

10.1186/2047-217X-2-6

Part of ISSN:

2047-217X

Contributors: Gorgolewski, Krzysztof J; Storkey, Amos; Bastin, Mark E; Whittle, Ian R; Wardlaw, Joanna M; Pernet, Cyril R
Source: Self-asserted source
Cyril Pernet via ResearcherID

Behavioral evidence of a dissociation between voice gender categorization and phoneme categorization using auditory morphed stimuli.

Frontiers in psychology
2013 | Journal article
DOI:

10.3389/fpsyg.2013.01018

Source: Self-asserted source
Cyril Pernet

Cerebral Processing of Voice Gender Studied Using a Continuous Carryover fMRI Design

Cerebral Cortex
2013 | Journal article
DOI:

10.1093/cercor/bhs090

Part of ISSN:

1047-3211

Contributors: Charest, Ian; Pernet, Cyril; Latinus, Marianne; Crabbe, Frances; Belin, Pascal
Source: Self-asserted source
Cyril Pernet via ResearcherID

Single subject fMRI test-retest reliability metrics and confounding factors

Neuroimage
2013 | Journal article
DOI:

10.1016/j.neuroimage.2012.10.085

Part of ISSN:

1053-8119

Contributors: Gorgolewski, Krzysztof J.; Storkey, Amos J.; Bastin, Mark E.; Whittle, Ian; Pernet, Cyril
Source: Self-asserted source
Cyril Pernet via ResearcherID

A systematic review of the utility of 1.5 versus 3 Tesla magnetic resonance brain imaging in clinical practice and research

European Radiology
2012 | Journal article
DOI:

10.1007/s00330-012-2500-8

Part of ISSN:

0938-7994

Contributors: Wardlaw, Joanna M.; Brindle, Will; Casado, Ana M.; Shuler, Kirsten; Henderson, Moira; Thomas, Brenda; Macfarlane, Jennifer; Maniega, Susana Munoz; Lymer, Katherine; Morris, Zoe et al.
Source: Self-asserted source
Cyril Pernet via ResearcherID

Adaptive thresholding for reliable topological inference in single subject fMRI analysis

Frontiers in Human Neuroscience
2012 | Journal article
DOI:

10.3389/fnhum.2012.00245

Contributors: Gorgolewski, Krzysztof J.; Storkey, Amos J.; Bastin, Mark E.; Pernet, Cyril R.
Source: Self-asserted source
Cyril Pernet via ResearcherID

Early ERPs to faces and objects are driven by phase, not amplitude spectrum information: Evidence from parametric, test-retest, single-subject analyses

Journal of Vision
2012 | Journal article
DOI:

10.1167/12.13.12

Part of ISSN:

1534-7362

Contributors: Bieniek, Magdalena M.; Pernet, Cyril R.; Rousselet, Guillaume A.
Source: Self-asserted source
Cyril Pernet via ResearcherID

Improving standards in brain-behavior correlation analyses

Frontiers in Human Neuroscience
2012 | Journal article
DOI:

10.3389/fnhum.2012.00119

Contributors: Rousselet, Guillaume A.; Pernet, Cyril R.
Source: Self-asserted source
Cyril Pernet via ResearcherID

Neural dissociation of phonological and visual attention span disorders in developmental dyslexia: FMRI evidence from two case reports

Brain and Language
2012 | Journal article
DOI:

10.1016/j.bandl.2011.12.015

Contributors: Peyrin, C.; Lanier, M.; Demonet, J. F.; Pernet, C.; Baciu, M.; Le Bas, J. F.; Valdois, S.
Source: Self-asserted source
Cyril Pernet via ResearcherID

Robust correlation analyses: false positive and power validation using a new open source matlab toolbox.

Frontiers in psychology
2012 | Journal article
DOI:

10.3389/fpsyg.2012.00606

Part of ISSN:

1664-1078

Contributors: Pernet, Cyril R; Wilcox, Rand; Rousselet, Guillaume A
Source: Self-asserted source
Cyril Pernet via ResearcherID

The role of pitch and timbre in voice gender categorization.

Frontiers in psychology
2012 | Journal article
Contributors: Pernet, Cyril R; Belin, Pascal
Source: Self-asserted source
Cyril Pernet via ResearcherID

The role of pitch and timbre in voice gender categorization.

2012 | Journal article
DOI:

10.3389/fpsyg.2012.00023

PMID:

22347205

PMC:

PMC3271351

Contributors: Pernet CR; Belin P
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

LIMO EEG: a toolbox for hierarchical LInear MOdeling of ElectroEncephaloGraphic data.

2011 | Journal article
DOI:

10.1155/2011/831409

PMID:

21403915

PMC:

PMC3049326

Contributors: Pernet CR; Chauveau N; Gaspar C; Rousselet GA
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

LIMO EEG: a toolbox for hierarchical LInear MOdeling of ElectroEncephaloGraphic data.

Computational intelligence and neuroscience
2011 | Journal article
Contributors: Pernet, Cyril R; Chauveau, Nicolas; Gaspar, Carl; Rousselet, Guillaume A
Source: Self-asserted source
Cyril Pernet via ResearcherID

Low and high imagers activate networks differentially in mental rotation

Neuropsychologia
2011 | Journal article
DOI:

10.1016/j.neuropsychologia.2011.07.011

Contributors: Logie, Robert H.; Pernet, Cyril R.; Buonocore, Antimo; Della Sala, Sergio
Source: Self-asserted source
Cyril Pernet via ResearcherID

Modeling Single-Trial ERP Reveals Modulation of Bottom-Up Face Visual Processing by Top-Down Task Constraints (in Some Subjects).

2011 | Journal article
DOI:

10.3389/fpsyg.2011.00137

PMID:

21886627

PMC:

PMC3153882

Contributors: Rousselet GA; Gaspar CM; Wieczorek KP; Pernet CR
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Modeling Single-Trial ERP Reveals Modulation of Bottom-Up Face Visual Processing by Top-Down Task Constraints (in Some Subjects).

2011 | Journal article
Source: Self-asserted source
Cyril Pernet via ResearcherID

Quantifying the Time Course of Visual Object Processing Using ERPs: It's Time to Up the Game.

2011 | Journal article
DOI:

10.3389/fpsyg.2011.00107

PMID:

21779262

PMC:

PMC3132679

Contributors: Rousselet GA; Pernet CR
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Quantifying the Time Course of Visual Object Processing Using ERPs: It's Time to Up the Game.

2011 | Journal article
Source: Self-asserted source
Cyril Pernet via ResearcherID

Reliability of ERP and single-trial analyses

2011 | Journal article
DOI:

10.1016/j.neuroimage.2011.06.052

Source: Self-asserted source
Cyril Pernet via ResearcherID

Robust statistics show no evidence for a relationship between fiber density and memory performance

2011 | Journal article
DOI:

10.1073/pnas.1109188108

Source: Self-asserted source
Cyril Pernet via ResearcherID

Single-trial analyses: why bother?

2011 | Journal article
DOI:

10.3389/fpsyg.2011.00322

PMID:

22073038

PMC:

PMC3210509

Contributors: Pernet CR; Sajda P; Rousselet GA
Source: Self-asserted source
Cyril Pernet via Europe PubMed Central

Single-trial analyses: why bother?

2011 | Journal article
Source: Self-asserted source
Cyril Pernet via ResearcherID

Visual object categorization in the brain: what can we really learn from ERP peaks?

2011 | Journal article
DOI:

10.3389/fnhum.2011.00156

Source: Self-asserted source
Cyril Pernet via ResearcherID

Healthy aging delays scalp EEG sensitivity to noise in a face discrimination task.

2010 | Journal article
Source: Self-asserted source
Cyril Pernet via ResearcherID

Age-related delay in information accrual for faces: Evidence from a parametric, single-trial EEG approach

BMC NEUROSCIENCE
2009 | Journal article
DOI:

10.1186/1471-2202-10-114

Part of ISSN:

1471-2202

Contributors: ROUSSELET, GA; HUSK, JS; PERNET, CR; GASPAR, CM; BENNETT, PJ; SEKULER, AB
Source: Self-asserted source
Cyril Pernet via ResearcherID

Brain classification reveals the right cerebellum as the best biomarker of dyslexia

BMC NEUROSCIENCE
2009 | Journal article
DOI:

10.1186/1471-2202-10-67

Part of ISSN:

1471-2202

Contributors: PERNET, CR; POLINE, JB; DEMONET, JF; ROUSSELET, GA
Source: Self-asserted source
Cyril Pernet via ResearcherID

Electrophysiological evidence for an early processing of human voices

BMC NEUROSCIENCE
2009 | Journal article
DOI:

10.1186/1471-2202-10-127

Part of ISSN:

1471-2202

Contributors: CHAREST, I; PERNET, CR; ROUSSELET, GA; QUINONES, I; LATINUS, M; FILLION-BILODEAU, S; CHARTRAND, JP; BELIN, P
Source: Self-asserted source
Cyril Pernet via ResearcherID

Testing for the Dual-Route Cascade Reading Model in the Brain: An fMRI Effective Connectivity Account of an Efficient Reading Style

Plos One
2009 | Journal article
DOI:

10.1371/journal.pone.0006675

Contributors: LEVY, J; PERNET, C; TRESERRAS, S; BOULANOUAR, K; AUBRY, F; DEMONET, JF; CELSIS, P
Source: Self-asserted source
Cyril Pernet via ResearcherID

When All Hypotheses are Right: A Multifocal Account of Dyslexia

2009 | Journal article
DOI:

10.1002/hbm.20670

Part of ISSN:

1065-9471

Source: Self-asserted source
Cyril Pernet via ResearcherID

Classification images reveal the information sensitivity of brain voxels in fMRI

NEUROIMAGE
2008 | Journal article
DOI:

10.1016/j.neuroimage.2008.01.029

Contributors: SMITH, FW; MUCKLI, L; BRENNAN, D; et al.
Source: Self-asserted source
Cyril Pernet via ResearcherID
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