Personal information

Emails & domains

Verified email domains

Websites & social links

Lab webpage
Google Scholar
Garvan Institute webpage
UNSW webpage

Other IDs

Scopus Author ID: 24437606000

Keywords

DNA methylation, epigenomics, embryogenesis

Countries

Spain, Australia

Activities

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Employment (13)

Spanish National Research Council: Seville, ES

2024-01-08 to present | Principal Investigator / Tenured Scientist (1.0 FTE) (Andalusian Center for Developmental Biology CABD)
Employment
Source: Self-asserted source
Ozren Bogdanovic

UNSW Sydney: Sydney, NSW, AU

2022-04-01 to present | Associate Professor (Adjunct) - Honorary appointment (School of Biotechnology and Biomolecular Sciences)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Spanish National Research Council: Seville, ES

2022-01-04 to 2024-07-01 | Principal Investigator / Ramón y Cajal Fellow (1.0 FTE) (Andalusian Center for Developmental Biology CABD)
Employment
Source: Self-asserted source
Ozren Bogdanovic

UNSW Sydney: Sydney, AU

2020-01-01 to 2022-03-31 | Associate Professor (0.2 FTE) (School of Biotechnology and Biomolecular Sciences)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Garvan Institute of Medical Research: Darlinghurst, New South Wales, AU

2020-01-01 to 2022-03-31 | Principal Research Fellow / Laboratory Head (0.8 FTE) (Genomics and Epigenetics Division)
Employment
Source: Self-asserted source
Ozren Bogdanovic

University of New South Wales: Sydney, NSW, AU

2019-01-01 to 2019-12-31 | Senior Research Fellow (School of Biotechnology and Biomolecular Sciences)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Garvan Institute of Medical Research: Darlinghurst, NSW, AU

2017-02-01 to 2019-12-31 | Senior Research Fellow / Laboratory Head (1.0 FTE) (Genomics and Epigenetics Division)
Employment
Source: Self-asserted source
Ozren Bogdanovic

University of New South Wales: Sydney, NSW, AU

2017-02-01 to 2018-12-31 | Conjoint Senior Lecturer (Faculty of Medicine, St. Vincent's Clinical School )
Employment
Source: Self-asserted source
Ozren Bogdanovic

The University of Western Australia: Crawley, WA, AU

2013-06-01 to 2017-01-31 | ARC DECRA Fellow (ARC CoE Plant Energy Biology)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Centro Andaluz de Biología del Desarrollo: Sevilla, Andalucía, ES

2010-03-05 to 2013-05-28 | Postdoc
Employment
Source: Self-asserted source
Ozren Bogdanovic

Radboud University Nijmegen: Nijmegen, NL

2005-03-05 to 2009-03-05 | PhD student (Molecular Biology)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Friedrich Miescher Institute for Biomedical Research: Basel, Basel-Stadt, CH

2003-11-01 to 2004-11-01 | Trainee
Employment
Source: Self-asserted source
Ozren Bogdanovic

Institut Ruder Boskovic: Zagreb, HR

2003-01-01 to 2003-11-01 | MSc student (Molecular Medicine)
Employment
Source: Self-asserted source
Ozren Bogdanovic

Education and qualifications (2)

Radboud University Nijmegen: Nijmegen, NL

2005-03-05 to 2012-04-03 | Ph.D. (Radboud Institute for Molecular Life Sciences)
Education
Source: Self-asserted source
Ozren Bogdanovic

Sveuciliste u Zagrebu Bioloski odsjek: Zagreb, HR

1998-09-01 to 2004-12-21 | MSc
Education
Source: Self-asserted source
Ozren Bogdanovic

Professional activities (5)

National Health and Medical Research Council: Canberra, ACT, AU

2019-01-01 | Career Development Fellowship (R.D. Wright)
Distinction
Source: Self-asserted source
Ozren Bogdanovic

Cancer Institute of New South Wales: Sydney, New South Wales, AU

2019-01-01 | Career Development Fellowship
Distinction
Source: Self-asserted source
Ozren Bogdanovic

Lorne Genome Conference Award Committee: Lorne, Victoria, AU

2017-02-15 | Millennium Science Award
Distinction
Source: Self-asserted source
Ozren Bogdanovic

Raine Medical Research Foundation: Nedlands, Western Australia, AU

2017-01-01 | Raine Research Prize
Distinction
Source: Self-asserted source
Ozren Bogdanovic

The University of Western Australia: Perth, WA, AU

2016-06-01 | Vice Chancellor's Early Career Investigator Award
Distinction
Source: Self-asserted source
Ozren Bogdanovic

Funding (5)

Epigenetic regulation of germline fate during embryonic development and oncogenesis

2019-01-01 to 2022-12-31 | Grant
National Health and Medical Research Council (Canberra, AU)
URL: https://app.dimensions.ai/details/grant/grant.7878886
GRANT_NUMBER: GNT1162993
Source: Self-asserted source
Ozren Bogdanovic via DimensionsWizard

Comprehensive characterisation of DNA demethylation pathways in vivo

2019-01-01 to 2021-12-31 | Grant
Australian Research Council (Canberra, AU)
URL: https://app.dimensions.ai/details/grant/grant.7849563
GRANT_NUMBER: DP190103852
Source: Self-asserted source
Ozren Bogdanovic via DimensionsWizard

Epigenetic regulation of germline cell fate during oncogenesis

2019-01 to 2021-12 | Grant
Cancer Institute NSW (NSW, NSW, AU)
GRANT_NUMBER:

CDF181229
Source: Self-asserted source
Ozren Bogdanovic

Deciphering the role of atypical DNA methylation in neuronal genome regulation and neurological disorders

2015-01-01 to 2017-12-31 | Grant
National Health and Medical Research Council (Canberra, AU)
URL: https://app.dimensions.ai/details/grant/grant.6719511
GRANT_NUMBER: 1090116
Source: Self-asserted source
Ozren Bogdanovic via DimensionsWizard

Functional epigenomics interrogation of DNA methylation dynamics during vertebrate development and evolution

2014-01-01 to 2016-12-31 | Grant
Australian Research Council (Canberra, AU)
URL: https://app.dimensions.ai/details/grant/grant.3931978
GRANT_NUMBER: DE140101962
Source: Self-asserted source
Ozren Bogdanovic via DimensionsWizard

Works (50 of 54)

Items per page:
Page 1 of 2

A single-cell multiomics roadmap of zebrafish spermatogenesis reveals regulatory principles of male germline formation

2025-03-13 | Preprint
DOI: 10.1101/2025.03.12.642371
Contributors: Ana María Burgos Ruíz; Fan-Suo Geng; Gala Pujol; Estefanía Sanabria; Thirsa Brethouwer; María Almuedo-Castillo; Aurora Ruiz-Herrera; Juan J. Tena; Ozren Bogdanovic
Source: check_circle
Crossref

Global genomics of the man-o’-war (Physalia) reveals biodiversity at the ocean surface

2024-07-10 | Preprint
DOI: 10.1101/2024.07.10.602499
Contributors: Samuel H. Church; River B. Abedon; Namrata Ahuja; Colin J. Anthony; Diego A. Ramirez; Lourdes M. Rojas; Maria E. Albinsson; Itziar Álvarez Trasobares; Reza E. Bergemann; Ozren Bogdanovic et al.
Source: check_circle
Crossref

Extensive DNA methylome rearrangement during early lamprey embryogenesis

Nature Communications
2024-03-04 | Journal article
DOI: 10.1038/s41467-024-46085-2
Contributors: Allegra Angeloni; Skye Fissette; Deniz Kaya; Jillian M. Hammond; Hasindu Gamaarachchi; Ira W. Deveson; Robert J. Klose; Weiming Li; Xiaotian Zhang; Ozren Bogdanovic
Source: check_circle
Crossref

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

Nucleic Acids Research
2023-10-13 | Journal article
DOI: 10.1093/nar/gkad695
Contributors: Samuel E Ross; Javier Vázquez-Marín; Krista R B Gert; Álvaro González-Rajal; Marcel E Dinger; Andrea Pauli; Juan Ramon Martínez-Morales; Ozren Bogdanovic
Source: check_circle
Crossref

Extensive DNA methylome rearrangement during early lamprey embryogenesis

2023-05-25 | Preprint
DOI: 10.1101/2023.05.25.542242
Contributors: Allegra Angeloni; Skye Fissette; Deniz Kaya; Jillian M. Hammond; Hasindu Gamaarachchi; Ira W. Deveson; Robert J. Klose; Weiming Li; Xiaotian Zhang; Ozren Bogdanovic
Source: check_circle
Crossref

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

2023-05-24 | Preprint
DOI: 10.1101/2023.05.24.542066
Contributors: Samuel E. Ross; Javier Vázquez-Marín; Krista R.B. Gert; Álvaro González-Rajal; Marcel E. Dinger; Andrea Pauli; Juan Ramon Martínez-Morales; Ozren Bogdanovic
Source: check_circle
Crossref

A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation

Science Advances
2022-04-15 | Journal article
DOI: 10.1126/sciadv.abn4935
Contributors: Christopher D. R. Wyatt; Barbara Pernaute; André Gohr; Marta Miret-Cuesta; Lucia Goyeneche; Quirze Rovira; Marion C. Salzer; Elvan Boke; Ozren Bogdanovic; Sophie Bonnal et al.
Source: check_circle
Crossref

Author Correction: Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish

Nature Communications
2021-07-27 | Journal article
DOI: 10.1038/s41467-021-24834-x
Contributors: Lorena Buono; Jorge Corbacho; Silvia Naranjo; María Almuedo-Castillo; Tania Moreno-Marmol; Berta de la Cerda; Estefanía Sanabria-Reinoso; Rocío Polvillo; Francisco-Javier Díaz-Corrales; Ozren Bogdanovic et al.
Source: check_circle
Crossref

Sequence determinants, function, and evolution of CpG islands

Biochemical Society Transactions
2021-06-30 | Journal article
DOI: 10.1042/BST20200695
Contributors: Allegra Angeloni; Ozren Bogdanovic
Source: check_circle
Crossref

Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish

Nature Communications
2021-06-23 | Journal article
DOI: 10.1038/s41467-021-24169-7
Contributors: Lorena Buono; Jorge Corbacho; Silvia Naranjo; María Almuedo-Castillo; Tania Moreno-Marmol; Berta de la Cerda; Estefanía Sanabria-Reinoso; Rocío Polvillo; Francisco-Javier Díaz-Corrales; Ozren Bogdanovic et al.
Source: check_circle
Crossref

José Luis Gómez-Skarmeta (1966–2020)

Nature Genetics
2020-12 | Journal article
DOI: 10.1038/s41588-020-00743-5
Contributors: Ozren Bogdanovic; Manuel Irimia
Source: check_circle
Crossref

Developmental accumulation of gene body and transposon non-CpG methylation in the zebrafish brain

2020-12-18 | Preprint
DOI: 10.1101/2020.12.17.423365
Contributors: Samuel E Ross; Daniel Hesselson; Ozren Bogdanovic
Source: check_circle
Crossref

Developmental remodelling of non-CG methylation at satellite DNA repeats

Nucleic Acids Research
2020-12-16 | Journal article
DOI: 10.1093/nar/gkaa1135
Contributors: Samuel E Ross; Allegra Angeloni; Fan-Suo Geng; Alex de Mendoza; Ozren Bogdanovic
Source: check_circle
Crossref

A developmentally programmed splicing failure attenuates the DNA damage response during mammalian zygotic genome activation

2020-11 | Preprint
DOI: 10.1101/2020.11.25.397794
OTHER-ID:

PPR244984
Contributors: Wyatt CDR; Pernaute B; Gohr A; Miret-Cuesta M; Goyeneche L; Rovira Q; Bogdanovic O; Bonnal S; Irimia M
Source: Self-asserted source
Ozren Bogdanovic via Europe PubMed Central

A zebrafish functional genomics model to investigate the role of human A20 variants in vivo.

Scientific reports
2020-11 | Journal article
DOI: 10.1038/s41598-020-75917-6
PMID: 33154446
PMC: PMC7644770
Contributors: Cultrone D; Zammit NW; Self E; Postert B; Han JZR; Bailey J; Warren J; Croucher DR; Kikuchi K; Bogdanovic O et al.
Source: Self-asserted source
Ozren Bogdanovic via Europe PubMed Central

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

2020-11 | Preprint
DOI: 10.1101/2020.11.11.379073
OTHER-ID:

PPR237012
Contributors: Edwards RJ; Field MA; Ferguson JM; Dudchenko O; Keilwagen J; Rosen BD; Johnson GS; Rice ES; Hillier L; Hammond JM et al.
Source: Self-asserted source
Ozren Bogdanovic via Europe PubMed Central

Desert Dingo (Canis lupus dingo) genome provides insights into their role in the Australian ecosystem

2020-11 | Preprint
DOI: 10.1101/2020.11.15.384057
OTHER-ID:

PPR238816
Contributors: Yadav S; Dudchenko O; Esvaran M; Rosen BD; Field MA; Skvortsova K; Edwards RJ; Gopalakrishnan S; Keilwagen J; Cochran BJ et al.
Source: Self-asserted source
Ozren Bogdanovic via Europe PubMed Central

Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish

2020-05-30 | Preprint
DOI: 10.1101/2020.05.28.121038
Contributors: Lorena Buono; Silvia Naranjo; Tania Moreno-Marmol; Berta de la Cerda; Rocío Polvillo; Francisco-Javier Díaz-Corrales; Ozren Bogdanovic; Paola Bovolenta; Juan-Ramón Martínez-Morales
Source: check_circle
Crossref

Pervasive non-CpG methylation at zebrafish mosaic satellite repeats

2020-05-14 | Preprint
DOI: 10.1101/2020.05.13.093203
Contributors: Samuel E Ross; Allegra Angeloni; Alex de Mendoza; Ozren Bogdanovic
Source: check_circle
Crossref

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.

GigaScience
2020-04-01 | Journal article
DOI: 10.1093/gigascience/giaa027
PMID: 32236524
PMC: PMC7111595
Source: Self-asserted source
Ozren Bogdanovic

Evolution of DNA Methylome Diversity in Eukaryotes

Journal of Molecular Biology
2020-03 | Journal article
DOI: 10.1016/j.jmb.2019.11.003
Contributors: Alex de Mendoza; Ryan Lister; Ozren Bogdanovic
Source: check_circle
Crossref

A zebrafish functional genomics model to investigate the role of human A20 variants in vivo

[]
2020-02-25 | Preprint
DOI: 10.1101/2020.02.23.961763
Source: Self-asserted source
Ozren Bogdanovic

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns

Cancer Cell
2019 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Enhancer DNA methylation: implications for gene regulation

Essays in Biochemistry
2019-12-20 | Journal article
DOI: 10.1042/EBC20190030
Contributors: Marnie Blewitt; Allegra Angeloni; Ozren Bogdanovic
Source: check_circle
Crossref

Retention of paternal DNA methylome in the developing zebrafish germline.

Nature communications
2019-07-11 | Journal article
DOI: 10.1038/s41467-019-10895-6
PMID: 31296860
PMC: PMC6624265
Source: Self-asserted source
Ozren Bogdanovic

TET enzymes, DNA demethylation and pluripotency

Biochemical Society Transactions
2019-06-28 | Journal article
DOI: 10.1042/BST20180606
Contributors: Samuel E. Ross; Ozren Bogdanovic
Source: check_circle
Crossref

Functions and mechanisms of epigenetic inheritance in animals

Nat. Rev. Mol. Cell Biol.
2018 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Amphioxus functional genomics and the origins of vertebrate gene regulation

Nature
2018-12 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

DNA methylation and the preservation of cell identity

Curr. Opin. Genet. Dev.
2017 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis

Genome Biol.
2017-10 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis

The Plant Cell
2017-08 | Journal article
DOI: 10.1105/tpc.16.00828
Contributors: Peter A. Crisp; Diep R. Ganguly; Aaron B. Smith; Kevin D. Murray; Gonzalo M. Estavillo; Iain Searle; Ethan Ford; Ozren Bogdanović; Ryan Lister; Justin O. Borevitz et al.
Source: check_circle
Crossref

Frequent lack of repressive capacity of promoter DNA methylation identified through genome-wide epigenomic manipulation

2017-08-16 | Other
DOI: 10.1101/170506
Contributors: Ethan Ford; Matthew R. Grimmer; Sabine Stolzenburg; Ozren Bogdanovic; Alex de Mendoza; Peggy J. Farnham; Pilar Blancafort; Ryan Lister
Source: check_circle
Crossref

Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition

Science
2017-07 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Germ line–inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition

Science
2017-07-14 | Journal article
DOI: 10.1126/science.aam5339
Contributors: Fides Zenk; Eva Loeser; Rosaria Schiavo; Fabian Kilpert; Ozren Bogdanović; Nicola Iovino
Source: check_circle
Crossref

Tet proteins: master regulators of vertebrate body plan formation?

Epigenomics
2017-02 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Active DNA demethylation at enhancers during the vertebrate phylotypic period

Nat. Genet.
2016 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications

Methods Mol. Biol.
2016 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Genome evolution in the allotetraploid frog Xenopus laevis

Nature
2016-10 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Embryonic transcription is controlled by maternally defined chromatin state

Nat Commun
2015 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

Genom Data
2015 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Meis1 coordinates a network of genes implicated in eye development and microphthalmia

Development
2015 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Of Mice and Man: Differential DNMT Dependence in Mammalian ESCs

Cell Stem Cell
2015 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Embryonic DNA methylation: insights from the genomics era

Brief Funct Genomics
2014 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Invertebrate epigenomics: the brave new world of the spineless

Brief Funct Genomics
2014 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

Methods
2013 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis

Genome Res.
2012 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

Genome Res.
2012 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Numb/Numbl-Opo antagonism controls retinal epithelium morphogenesis by regulating integrin endocytosis

Dev. Cell
2012 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

The epigenome in early vertebrate development

Genesis
2012 | Journal article
Source: Self-asserted source
Ozren Bogdanovic

Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos

BMC Res Notes
2011 | Journal article
Source: Self-asserted source
Ozren Bogdanovic
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Peer review (7 reviews for 5 publications/grants)

Review activity for Genome biology. (1)
Review activity for Nature communications (2)
Review activity for Nature ecology & evolution. (1)
Review activity for Nature genetics. (2)
Review activity for npj genomic medicine. (1)
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