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USDA Agricultural Research Service: Athens, GA, US

2007-07-07 to present | Dr. (Southeast Poultry Research Laboratory)
Employment
Source: Self-asserted source
Claudio Afonso

Works (27)

Coding-complete genome sequence of a GI-13 infectious bronchitis virus from commercial chicken in India

Microbiology Resource Announcements
2025-03-11 | Journal article
DOI: 10.1128/mra.01142-24
Contributors: Henry M. Kariithi; Jeremy D. Volkening; Claudio L. Afonso; Mohamed Helmy; Pushparaj P. Chaudhari; Eduardo L. Decanini; Jelle Matthijnssens
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Crossref

Sequencing of historic samples provides complete coding sequences of chicken calicivirus from the United States

Microbiology Resource Announcements
2024-10-10 | Journal article
DOI: 10.1128/mra.00777-24
Contributors: Iryna V. Goraichuk; James F. Davis; Claudio L. Afonso; David L. Suarez; Simon Roux
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Crossref

Non-Targeted RNA Sequencing: Towards the Development of Universal Clinical Diagnosis Methods for Human and Veterinary Infectious Diseases

Veterinary Sciences
2024-05-26 | Journal article
DOI: 10.3390/vetsci11060239
Contributors: Stephen Spatz; Claudio L. Afonso
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Crossref
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Next-Generation Sequencing for the Detection of Microbial Agents in Avian Clinical Samples

Veterinary Sciences
2023-12-04 | Journal article
DOI: 10.3390/vetsci10120690
Contributors: Claudio L. Afonso; Anna M. Afonso
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Crossref
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Complete genome sequence of seven virulent Newcastle disease virus isolates of sub-genotype XIII.1.1 from Tanzania

Microbiology Resource Announcements
2023-10-19 | Journal article
DOI: 10.1128/MRA.00405-23
Contributors: Iryna V. Goraichuk; Peter L. M. Msoffe; Gaspar H. Chiwanga; Kiril M. Dimitrov; Claudio L. Afonso; David L. Suarez; Jelle Matthijnssens
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Crossref

Complete Genome Sequence of an Avian Orthoavulavirus 13 Strain Detected in Ukraine

Microbiology Resource Announcements
2023-06-20 | Journal article
DOI: 10.1128/mra.00197-23
Contributors: Iryna V. Goraichuk; Denys Muzyka; Oleksandr Gaidash; Anton Gerilovych; Borys Stegniy; Mary J. Pantin-Jackwood; Patti J. Miller; Claudio L. Afonso; David L. Suarez; Kenneth M. Stedman
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Crossref

Unique Variants of Avian Coronaviruses from Indigenous Chickens in Kenya

Viruses
2023-01-17 | Journal article
DOI: 10.3390/v15020264
Contributors: Henry M. Kariithi; Jeremy D. Volkening; Iryna V. Goraichuk; Leonard O. Ateya; Dawn Williams-Coplin; Tim L. Olivier; Yatinder S. Binepal; Claudio L. Afonso; David L. Suarez
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Detection and Genome Sequence Analysis of Avian Metapneumovirus Subtype A Viruses Circulating in Commercial Chicken Flocks in Mexico

Veterinary Sciences
2022-10-19 | Journal article
DOI: 10.3390/vetsci9100579
Contributors: Henry M. Kariithi; Nancy Christy; Eduardo L. Decanini; Stéphane Lemiere; Jeremy D. Volkening; Claudio L. Afonso; David L. Suarez
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Crossref
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Near-Complete Genome Sequences of Five Siciniviruses from North America

Microbiology Resource Announcements
2021-05-13 | Journal article
DOI: 10.1128/MRA.00364-21
Contributors: Iryna V. Goraichuk; James F. Davis; D. Joshua Parris; Henry M. Kariithi; Claudio L. Afonso; David L. Suarez; John J. Dennehy
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Crossref

Whole-Genome Sequence of Avian coronavirus from a 15-Year-Old Sample Confirms Evidence of GA08-like Strain Circulation 4 Years Prior to Its First Reported Outbreak

Microbiology Resource Announcements
2021-04-15 | Journal article
DOI: 10.1128/MRA.01460-20
Contributors: Iryna V. Goraichuk; James F. Davis; Arun B. Kulkarni; Claudio L. Afonso; David L. Suarez; Jelle Matthijnssens
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Surveillance and Genetic Characterization of Virulent Newcastle Disease Virus Subgenotype V.3 in Indigenous Chickens from Backyard Poultry Farms and Live Bird Markets in Kenya

Viruses
2021-01 | Journal article | Author
DOI: 10.3390/v13010103
Contributors: Henry Muriuki Kariithi; Helena L. Ferreira; Catharine N. Welch; Leonard O. Ateya; Auleria A. Apopo; Richard Zoller; Jeremy Volkening; Dawn Williams-Coplin; Darren J. Parris; Tim L. Olivier et al.
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Multidisciplinary Digital Publishing Institute

Virulence during Newcastle Disease Viruses Cross Species Adaptation

Viruses
2021-01 | Journal article | Author
DOI: 10.3390/v13010110
Contributors: Claudio Afonso
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Multidisciplinary Digital Publishing Institute
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Preferred source (of 2)‎

A 24-Year-Old Sample Contributes the Complete Genome Sequence of Fowl Aviadenovirus D from the United States

Microbiology Resource Announcements
2021-01-07 | Journal article
DOI: 10.1128/MRA.01211-20
Contributors: Iryna V. Goraichuk; James F. Davis; Arun B. Kulkarni; Claudio L. Afonso; David L. Suarez; Jelle Matthijnssens
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Crossref

Complete Coding Sequences of Three Chicken Parvovirus Isolates from the United States

Microbiology Resource Announcements
2020-09-24 | Journal article
DOI: 10.1128/MRA.00735-20
Contributors: Iryna V. Goraichuk; James F. Davis; Claudio L. Afonso; David L. Suarez; Jelle Matthijnssens
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Crossref

A 25-Year-Old Sample Contributes the Complete Genome Sequence of Avian Coronavirus Vaccine Strain ArkDPI, Reisolated from Commercial Broilers in the United States

Microbiology Resource Announcements
2020-02-27 | Journal article
DOI: 10.1128/MRA.00067-20
Contributors: Iryna V. Goraichuk; James F. Davis; Arun B. Kulkarni; Claudio L. Afonso; David L. Suarez; Simon Roux
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Crossref

Complete Genome Sequence of Avian Coronavirus Strain GA08 (GI-27 Lineage)

Microbiology Resource Announcements
2020-02-27 | Journal article
DOI: 10.1128/MRA.00068-20
Contributors: Iryna V. Goraichuk; James F. Davis; Arun B. Kulkarni; Claudio L. Afonso; David L. Suarez; Simon Roux
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Crossref

Genetic stability of a Newcastle disease virus vectored infectious laryngotracheitis virus vaccine after serial passages in chicken embryos

Vaccine
2020-01 | Journal article
DOI: 10.1016/j.vaccine.2019.10.074
Contributors: Qingzhong Yu; Yufeng Li; Kiril Dimitrov; Claudio L. Afonso; Stephen Spatz; Laszlo Zsak
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Crossref

Complete Genome Sequences of 11 Newcastle Disease Virus Isolates of Subgenotype VII.2 from Indonesia

Microbiology Resource Announcements
2020-01-30 | Journal article
DOI: 10.1128/mra.01519-19
Contributors: Iryna V. Goraichuk; Dawn Williams-Coplin; Michael H. Wibowo; Peter A. Durr; Widya Asmara; Sidna Artanto; Kiril M. Dimitrov; Claudio L. Afonso; David L. Suarez; Simon Roux
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Crossref

Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus

Infection, Genetics and Evolution
2019-10 | Journal article
DOI: 10.1016/j.meegid.2019.103917
Contributors: Kiril M. Dimitrov; Celia Abolnik; Claudio L. Afonso; Emmanuel Albina; Justin Bahl; Mikael Berg; Francois-Xavier Briand; Ian H. Brown; Kang-Seuk Choi; Ilya Chvala et al.
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Crossref

First Complete Genome Sequence of Currently Circulating Infectious Bronchitis Virus Strain DMV/1639 of the GI-17 Lineage

Microbiology Resource Announcements
2019-08-22 | Journal article
DOI: 10.1128/MRA.00840-19
Contributors: Iryna V. Goraichuk; Arun B. Kulkarni; Dawn Williams-Coplin; David L. Suarez; Claudio L. Afonso; Simon Roux
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Crossref

Presence of Newcastle disease viruses of sub-genotypes Vc and VIn in backyard chickens and in apparently healthy wild birds from Mexico in 2017

Virus Genes
2019-08-12 | Journal article
DOI: 10.1007/s11262-019-01663-1
Contributors: H. L. Ferreira; T. L. Taylor; A. E. Absalon; K. M. Dimitrov; D. V. Cortés-Espinosa; S. L. Butt; J. L. Marín-Cruz; I. V. Goraichuk; J. D. Volkening; D. L. Suarez et al.
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Crossref

First Complete Genome Sequence of a Subgenotype Vd Newcastle Disease Virus Isolate

Microbiology Resource Announcements
2019-07-03 | Journal article
DOI: 10.1128/MRA.00436-19
Contributors: Iryna V. Goraichuk; Peter L. M. Msoffe; Gaspar H. Chiwanga; Kiril M. Dimitrov; Claudio L. Afonso; David L. Suarez; Jelle Matthijnssens
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Crossref

Epidemiology, control, and prevention of Newcastle disease in endemic regions: Latin America

Tropical Animal Health and Production
2019-06-15 | Journal article
DOI: 10.1007/s11250-019-01843-z
Contributors: A. E. Absalón; Diana V. Cortés-Espinosa; E. Lucio; P. J. Miller; C. L. Afonso
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Crossref

First Genome Sequence of Newcastle Disease Virus of Genotype VIIi from Jordan

Microbiology Resource Announcements
2018-12-13 | Journal article
DOI: 10.1128/mra.01136-18
Contributors: Mustafa Ababneh; Helena L. Ferreira; Mohammad Khalifeh; David L. Suarez; Claudio L. Afonso; Jelle Matthijnssens
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Crossref

Rapid and sensitive virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing

2018-06-17 | Other
DOI: 10.1101/349159
Contributors: Salman Latif Butt; Tonya L. Taylor; Jeremy D. Volkening; Kiril M. Dimitrov; Dawn Williams-Coplin; Kevin K. Lahmers; Asif Masood Rana; David L. Suarez; Claudio L. Afonso; Adrian Marchetti
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Crossref

Draft Genome Sequences of Three Ochrobactrum spp. Isolated from Different Avian Hosts in Pakistan

Genome Announcements
2018-04-12 | Journal article
DOI: 10.1128/genomeA.00269-18
Contributors: Poonam Sharma; Lindsay F. Killmaster; Jeremy D. Volkening; Stivalis Cardenas-Garcia; Abdul Wajid; Shafqat Fatima Rehmani; Asma Basharat; Patti J. Miller; Claudio L. Afonso
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Crossref

Draft Genome Sequences of Five Novel Ochrobactrum spp. Isolated from Different Avian Hosts in Nigeria

Genome Announcements
2018-03-15 | Journal article
DOI: 10.1128/genomeA.00063-18
Contributors: Poonam Sharma; Lindsay F. Killmaster; Jeremy D. Volkening; Stivalis Cardenas-Garcia; Ismaila Shittu; Clement A. Meseko; Lanre K. Sulaiman; Tony M. Joannis; Patti J. Miller; Claudio L. Afonso
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Crossref
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