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Mathematical Epidemiology; Data Science
United Kingdom

Activities

Employment (3)

The University of Manchester: Manchester, GB

Employment
Source: check_circle
University of Manchester - PURE

University of Manchester: Manchester, GB

2015-01-01 to present (School of Mathematics)
Employment
Source: Self-asserted source
Thomas House

University of Warwick: Coventry, Coventry, GB

2006-01-01 to 2014-12-31
Employment
Source: Self-asserted source
Thomas House

Education and qualifications (2)

University of Sussex: Brighton, Brighton and Hove, GB

2002-10-01 to 2005-09-30 | DPhil
Education
Source: Self-asserted source
Thomas House

University of Oxford: Oxford, Oxfordshire, GB

1998-10-01 to 2002-06-30 | BA
Education
Source: Self-asserted source
Thomas House

Funding (10)

COVID-19 Modelling Consortium: quantitative epidemiological predictions in response to an evolving pandemic

2020-11-19 to 2022-05-17 | Grant
Medical Research Council (London, GB)
GRANT_NUMBER: MR/V038613/1
Source: Self-asserted source
Thomas House via DimensionsWizard

An analytical framework for Test, Trace and Isolate in the UK: optimising and targeting deployment alongside other measures.

2020-08-31 to 2021-08-30 | Grant
Medical Research Council (London, GB)
GRANT_NUMBER: MR/V028618/1
Source: Self-asserted source
Thomas House via DimensionsWizard

Epidemic modelling and statistical support for policy: sub-populations, forecasting, and long-term planning

2020-07-31 to 2022-01-31 | Grant
Engineering and Physical Sciences Research Council (Swindon, GB)
GRANT_NUMBER: EP/V027468/1
Source: Self-asserted source
Thomas House via DimensionsWizard

Mathematical, statistical and computational methods to improve mental health

2018-09-16 to 2022-12-30 | Grant
Engineering and Physical Sciences Research Council (Swindon, GB)
GRANT_NUMBER: 2373157
Source: Self-asserted source
Thomas House via DimensionsWizard

Operationalising Modern Mathematical Epidemiology

2016-11-01 to 2018-10-31 | Grant
Engineering and Physical Sciences Research Council (Swindon, GB)
GRANT_NUMBER: EP/N033701/1
Source: Self-asserted source
Thomas House via DimensionsWizard

Robust Mathematical Modelling of Household-Stratified Epidemic Time-series

Source: Self-asserted source
Thomas House via DimensionsWizard

Robust Mathematical Modelling of Household-Stratified Epidemic Time-series

Source: Self-asserted source
Thomas House via DimensionsWizard

Epidemic inverse problems: geometry and sampling

2013-06-30 to 2015-06-29 | Grant
Engineering and Physical Sciences Research Council (Swindon, GB)
GRANT_NUMBER: EP/L001950/1
Source: Self-asserted source
Thomas House via DimensionsWizard

Disease transmission and control in complex, structured populations

Source: Self-asserted source
Thomas House via DimensionsWizard

Implications of clustering (motif-structure) for network-based processes

Source: Self-asserted source
Thomas House via DimensionsWizard

Works (50 of 144)

Items per page:
Page 1 of 3

Cycles of Susceptibility: Immunity Debt Explains Altered Infectious Disease Dynamics Post-Pandemic

Clinical Infectious Diseases
2024-10-11 | Journal article
Contributors: Alasdair P S Munro; Thomas House
Source: check_circle
Crossref

Estimating the household secondary attack rate and serial interval of COVID-19 using social media

npj Digital Medicine
2024-07-20 | Journal article
Contributors: Aarzoo Dhiman; Elad Yom-Tov; Lorenzo Pellis; Michael Edelstein; Richard Pebody; Andrew Hayward; Thomas House; Thomas Finnie; David Guzman; Vasileios Lampos et al.
Source: check_circle
Crossref

Identifying Weekly Trajectories of Pain Severity Using Daily Data From an mHealth Study: Cluster Analysis

JMIR mHealth and uHealth
2024-07-19 | Journal article
Contributors: Claire L Little; David M Schultz; Thomas House; William G Dixon; John McBeth
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Epidemiological and phylogenetic analyses of public SARS-CoV-2 data from Malawi

2024-06-28 | Preprint
Contributors: Mwandida Kamba Afuleni; Roberto Cahuantzi; Katrina A. Lythgoe; Atupele Ngina Mulaga; Ian Hall; Olatunji Johnson; Thomas House
Source: check_circle
Crossref

Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification

Nature Communications
2024-06-24 | Journal article
Contributors: Koen B. Pouwels; David W. Eyre; Thomas House; Ben Aspey; Philippa C. Matthews; Nicole Stoesser; John N. Newton; Ian Diamond; Ruth Studley; Nick G. H. Taylor et al.
Source: check_circle
Crossref

Time-varying reproduction number estimation:

2024-03-28 | Other | Author
SOURCE-WORK-ID:

a7f10a0e-585c-42c0-84b5-1e9caca0849b

Contributors: Xiaoxi Pang; Yang Han; Elise Tessier; Nurin Abdul Aziz; Lorenzo Pellis; Thomas House; ian hall
Source: check_circle
University of Manchester - PURE
grade
Preferred source (of 2)‎

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning method

Proceedings of the National Academy of Sciences
2024-03-19 | Journal article | Author
SOURCE-WORK-ID:

7f3e814c-630c-4660-a1f6-4cee3ce2d88b

EID:

2-s2.0-85187763326

Contributors: Roberto Cahuantzi Alvarado; Katrina A. Lythgoe; ian hall; Lorenzo Pellis; Thomas House
Source: check_circle
University of Manchester - PURE

Prevalence of persistent SARS-CoV-2 in a large community surveillance study

Nature
2024-02-29 | Journal article
Contributors: Mahan Ghafari; Matthew Hall; Tanya Golubchik; Daniel Ayoubkhani; Thomas House; George MacIntyre-Cockett; Helen R. Fryer; Laura Thomson; Anel Nurtay; Steven A. Kemp et al.
Source: check_circle
Crossref

NuZZ: numerical Zig-Zag for general models

Statistics and Computing
2024-01-05 | Journal article | Author
SOURCE-WORK-ID:

39bfb598-987a-4d4d-9585-3ecac5841002

EID:

2-s2.0-85181444676

Contributors: Filippo Pagani; Augustin Chevallier; Sam Power; Thomas House; Simon Cotter
Source: check_circle
University of Manchester - PURE

Diversity of symptom phenotypes in SARS-CoV-2 community infections observed in multiple large datasets

Scientific Reports
2023-12-07 | Journal article | Author
SOURCE-WORK-ID:

fde5ea9a-60c3-4264-9db7-74e9392b2e78

EID:

2-s2.0-85178875698

Contributors: Martyn Fyles; Karina-Doris Vihta; Carole H Sudre; Harry Long; Rajenki Das; Caroline Jay; Tom Wingfield; Fergus Cumming; William Green; Pantelis Hadjipantelis et al.
Source: check_circle
University of Manchester - PURE

Tracking the structure and sentiment of vaccination discussions on Mumsnet

Social Network Analysis and Mining
2023-11-18 | Journal article | Author
SOURCE-WORK-ID:

6c505614-6374-4b44-99ac-b4454493efc6

EID:

2-s2.0-85176914841

Contributors: Miguel Silva; Rigina Skeva; Thomas House; Caroline Jay
Source: check_circle
University of Manchester - PURE

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey

Proceedings of the Royal Society B: Biological Sciences
2023-10-25 | Journal article
Contributors: Katrina A. Lythgoe; Tanya Golubchik; Matthew Hall; Thomas House; Roberto Cahuantzi; George MacIntyre-Cockett; Helen Fryer; Laura Thomson; Anel Nurtay; Mahan Ghafani et al.
Source: check_circle
Crossref

What do people living with chronic pain want from a pain forecast? A research prioritization study

PL o S One
2023-10-12 | Journal article | Author
SOURCE-WORK-ID:

fd3b43d7-eb37-4cdd-8f4a-325ed21d44f6

EID:

2-s2.0-85174195075

Contributors: Claire L Little; Katie Druce; William Dixon; David M. Schultz; Thomas House; John McBeth
Source: check_circle
University of Manchester - PURE

The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom

Nature Communications
2023-07-11 | Journal article
Contributors: Samuel P. C. Brand; Massimo Cavallaro; Fergus Cumming; Charlie Turner; Isaac Florence; Paula Blomquist; Joe Hilton; Laura M. Guzman-Rincon; Thomas House; D. James Nokes et al.
Source: check_circle
Crossref

Identifying Weekly Trajectories of Pain Severity Using Daily Data From an mHealth Study: Cluster Analysis (Preprint)

2023-04-28 | Preprint
Contributors: Claire L Little; David M Schultz; Thomas House; William G Dixon; John McBeth
Source: check_circle
Crossref

What do people living with chronic pain want from a pain forecast? A research prioritisation study

2023-04-24 | Preprint
Contributors: Claire L Little; Katie L Druce; William G Dixon; David M Schultz; Thomas House; John McBeth
Source: check_circle
Crossref

Comparing directed networks via denoising graphlet distributions

Journal of Complex Networks
2023-04-01 | Journal article | Author
SOURCE-WORK-ID:

510b4e66-d0a0-4849-b132-73d356c12906

EID:

2-s2.0-85160448672

Contributors: Miguel Silva; Robert E. Gaunt; Luis Ospina-Forero; Caroline Jay; Thomas House
Source: check_circle
University of Manchester - PURE

Modelling and classifying joint trajectories of self-reported mood and pain in a large cohort study

PL o S Digital Health
2023-03-30 | Journal article | Author
SOURCE-WORK-ID:

f64ad02a-14dd-467c-8aef-831dd4229d19

EID:

2-s2.0-85202079844

Contributors: Rajenki Das; Mark Muldoon; Mark Lunt; John McBeth; Belay B Yimer; Thomas House
Source: check_circle
University of Manchester - PURE

Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification

2023-03-06 | Preprint
Contributors: Koen B. Pouwels; David W. Eyre; Thomas House; Ben Aspey; Philippa C. Matthews; Nicole Stoesser; John N. Newton; Ian Diamond; Ruth Studley; Nick G. H.Taylor et al.
Source: check_circle
Crossref

ClinCirc identifies alterations of the circadian peripheral oscillator in critical care patients

The Journal of clinical investigation
2023-02-15 | Journal article | Author
SOURCE-WORK-ID:

0567f1f0-0d12-4431-b90d-d5731850e232

EID:

2-s2.0-85148113768

Contributors: Peter Cunningham; Gareth Kitchen; Callum Jackson; Stavros Papachristos; Thomas Springthorpe; David Van Dellen; Julie Gibbs; Tim Felton; Anthony Wilson; Jonathan Bannard-Smith et al.
Source: check_circle
University of Manchester - PURE

High number of SARS-CoV-2 persistent infections uncovered through genetic analysis of samples from a large community-based surveillance study

2023-01-30 | Preprint
Contributors: Mahan Ghafari; Matthew Hall; Tanya Golubchik; Daniel Ayoubkhani; Thomas House; George MacIntyre-Cockett; Helen Fryer; Laura Thomson; Anel Nurtay; David Buck et al.
Source: check_circle
Crossref

Authors' reply to the discussion of ‘Estimation of reproduction numbers in real time: conceptual and statistical challenges’ by Pellis et al. in Session 3 of the Royal Statistical Society's Special Topic Meeting on COVID ‐19 transmission: 11 June 2021

Journal of the Royal Statistical Society: Series A (Statistics in Society)
2022-11 | Journal article
Contributors: Lorenzo Pellis; Paul J. Birrell; Joshua Blake; Ian Hall; Thomas A. House; Christopher E. Overton; Francesca Scarabel; Helena B. Stage; Daniela De Angelis
Source: check_circle
Crossref

Estimation of reproduction numbers in real time: Conceptual and statistical challenges

Journal of the Royal Statistical Society: Series A (Statistics in Society)
2022-11 | Journal article
Contributors: Lorenzo Pellis; Paul J. Birrell; Joshua Blake; Christopher E. Overton; Francesca Scarabel; Helena B. Stage; Ellen Brooks‐Pollock; Leon Danon; Ian Hall; Thomas A. House et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The role of vaccination and public awareness in forecasts of monkeypox incidence in the United Kingdom

2022-10-14 | Preprint
Contributors: Samuel Brand; Massimo Cavallaro; Fergus Cumming; Charlie Turner; Isaac Florence; Paula Blomquist; Joe Hilton; Laura Guzman-Rincon; Thomas House; James Nokes et al.
Source: check_circle
Crossref

Inferring risks of coronavirus transmission from community household data

Statistical Methods in Medical Research
2022-09 | Journal article
Contributors: Thomas House; Heather Riley; Lorenzo Pellis; Koen B Pouwels; Sebastian Bacon; Arturas Eidukas; Kaveh Jahanshahi; Rosalind M Eggo; A. Sarah Walker
Source: check_circle
Crossref

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods

2022-09-14 | Preprint
Contributors: Roberto Cahuantzi; Katrina A. Lythgoe; Ian Hall; Lorenzo Pellis; Thomas A. House
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

EpiBeds

PLoS computational biology
2022-09-06 | Journal article | Author
SOURCE-WORK-ID:

90f8eaab-7cf9-460d-bd6f-610382ba4d58

EID:

2-s2.0-85138096218

Contributors: Christopher E Overton; Lorenzo Pellis; Helena Stage; Francesca Scarabel; Joshua Burton; Christophe Fraser; ian hall; Thomas House; Chris Jewell; Anel Nurtay et al.
Source: check_circle
University of Manchester - PURE

Public perceptions and interactions with UK COVID-19 Test, Trace and Isolate policies, and implications for pandemic infectious disease modelling [version 1; peer review: awaiting peer review]

F1000Research
2022-09-06 | Journal article | Author
SOURCE-WORK-ID:

cc375cef-0de1-49bf-8001-0fecf05ede4b

EID:

2-s2.0-85142481072

Contributors: Guy Clarke Marshall; Rigina Skeva; Caroline Jay; Miguel Silva; Martyn Fyles; Thomas House; Emma L. Davis; Li Pi; Graham F. Medley; Billy J. Quilty et al.
Source: check_circle
University of Manchester - PURE

Understanding Waiting Lists Pressures

2022-08-24 | Preprint
Contributors: Kevin Fong; Yasser Mushtaq; Thomas House; Dan Gordon; Yingrae Chen; Darren Griffths; Shazaad Ahmad; Neil Walton
Source: check_circle
Crossref

The role of vaccination and public awareness in medium-term forecasts of monkeypox incidence in the United Kingdom

2022-08-17 | Preprint
Contributors: SPC Brand; M Cavallaro; J Hilton; LM Guzman-Rincon; T House; MJ Keeling; DJ Nokes
Source: check_circle
Crossref

Quantification of protein abundance and interaction defines a mechanism for operation of the circadian clock

eLife
2022-03-14 | Journal article | Author
SOURCE-WORK-ID:

238e144d-a42e-4255-b827-1bca6bd15350

EID:

2-s2.0-85127348925

Contributors: Alexander Koch; James Bagnall; Nicola J Smyllie; Nicola Begley; Antony D. Adamson; Jennifer L Fribourgh; David Geoffrey Spiller; Qing Jun Meng; Carrie L Partch; Korbinian Strimmer et al.
Source: check_circle
University of Manchester - PURE

Public perceptions and interactions with UK COVID-19 Test, Trace and Isolate policies, and implications for pandemic infectious disease modelling

2022-02-01 | Preprint
Contributors: Guy C. Marshall; Rigina Skeva; Caroline Jay; Miguel E. P. Silva; Martyn Fyles; Thomas House; Emma L. Davis; Li Pi; Graham F. Medley; Billy J. Quilty et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Lineage replacement and evolution captured by three years of the United Kingdom Covid Infection Survey

2022-01-06 | Preprint
Contributors: Katrina Lythgoe; Tanya Golubchik; Matthew Hall; Thomas House; Roberto Cahuantzi; George MacIntyre-Cockett; Helen Fryer; Laura Thomson; Anel Nurtay; Mahan Ghafani et al.
Source: check_circle
Crossref

Heterogeneity in the Association between Weather and Pain Severity among Patients with Chronic-Pain: A Bayesian Multilevel Regression Analysis

Pain Reports
2022-01-01 | Journal article | Author
SOURCE-WORK-ID:

792db92d-45a9-4c87-9d24-af2b3509427b

EID:

2-s2.0-85133914374

Contributors: Belay B Yimer; David M. Schultz; Anna L Beukenhorst; Mark Lunt; Huai L. Pisaniello; Thomas House; Jamie C Sergeant; John McBeth; William Dixon
Source: check_circle
University of Manchester - PURE

Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK

Nature Medicine
2021-12 | Journal article
Contributors: Koen B. Pouwels; Emma Pritchard; Philippa C. Matthews; Nicole Stoesser; David W. Eyre; Karina-Doris Vihta; Thomas House; Jodie Hay; John I. Bell; John N. Newton et al.
Source: check_circle
Crossref

Tracking the Emergence of SARS-CoV-2 Alpha Variant in the United Kingdom

New England Journal of Medicine
2021-12-30 | Journal article
Contributors: A. Sarah Walker; Karina-Doris Vihta; Owen Gethings; Emma Pritchard; Joel Jones; Thomas House; Iain Bell; John I. Bell; John N. Newton; Jeremy Farrar et al.
Source: check_circle
Crossref

Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK

2021-10-29 | Other
Contributors: William Waites; Carl AB Pearson; Katherine M Gaskell; Thomas House; Lorenzo Pellis; Marina Johnson; Victoria Gould; Adam Hunt; Neil RH Stone; Ben Kasstan et al.
Source: check_circle
Crossref

EpiBeds

2021-10-12 | Working paper | Author
SOURCE-WORK-ID:

ce34e529-8ae0-4e7b-b8ed-acd7fbdb88cd

Contributors: Christopher E. Overton; Lorenzo Pellis; Helena B. Stage; Francesca Scarabel; Joshua Burton; Christophe Fraser; ian hall; Thomas House; Chris Jewell; Anel Nurtay et al.
Source: check_circle
University of Manchester - PURE

Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics

Nature Communications
2021-09-30 | Journal article
Contributors: Louise Dyson; Edward M. Hill; Sam Moore; Jacob Curran-Sebastian; Michael J. Tildesley; Katrina A. Lythgoe; Thomas House; Lorenzo Pellis; Matt J. Keeling
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Impact of Delta on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK

2021-08-24 | Other
Contributors: Koen B. Pouwels; Emma Pritchard; Philippa C. Matthews; Nicole Stoesser; David W. Eyre; Karina-Doris Vihta; Thomas House; Jodie Hay; John I Bell; John N Newton et al.
Source: check_circle
Crossref

SARS-CoV-2 antigen testing

The Lancet. Respiratory medicine
2021-07 | Other | Author
SOURCE-WORK-ID:

8d99c408-efd4-4bd1-9b32-5db2e01a1129

EID:

2-s2.0-85109997816

WOSUID:

000668591900017

Contributors: Elizabeth Fearon; Iain Buchan; Rajenki Das; Emma L Davis; Martyn Fyles; ian hall; T Deirdre Hollingsworth; Thomas House; Caroline Jay; Graham F Medley et al.
Source: check_circle
University of Manchester - PURE

Hospital Length of Stay For COVID-19 Patients: Data-Driven Methods for Forward Planning

BMC Infectious Diseases
2021-07-22 | Journal article | Author
SOURCE-WORK-ID:

7df5a4a9-74e8-4c86-b4dc-4fd733bfae12

EID:

2-s2.0-85103174601

Contributors: Bindu Vekaria; Christopher Overton; Arkadiusz Wiśniowski; Shazaad Ahmad; Andrea Lisette Aparicio Castro; Jacob Curran-Sebastian; Jane Eddleston; Neil Hanley; Thomas House; Ji Hye Kim et al.
Source: check_circle
University of Manchester - PURE

Challenges in control of COVID-19: short doubling time and long delay to effect of interventions

Philosophical Transactions of the Royal Society B: Biological Sciences
2021-07-19 | Journal article
Contributors: Lorenzo Pellis; Francesca Scarabel; Helena B. Stage; Christopher E. Overton; Lauren H. K. Chappell; Elizabeth Fearon; Emma Bennett; Katrina A. Lythgoe; Thomas A. House; Ian Hall
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Outbreaks in care homes may lead to substantial disease burden if not mitigated

Philosophical Transactions of the Royal Society B: Biological Sciences
2021-07-19 | Journal article
Contributors: Ian Hall; Hugo Lewkowicz; Luke Webb; Thomas House; Lorenzo Pellis; James Sedgwick; Nick Gent
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

The population attributable fraction of cases due to gatherings and groups with relevance to COVID-19 mitigation strategies

Philosophical Transactions of the Royal Society B: Biological Sciences
2021-07-19 | Journal article
Contributors: Ellen Brooks-Pollock; Jonathan M. Read; Thomas House; Graham F. Medley; Matt J. Keeling; Leon Danon
Source: check_circle
Crossref

Using a household-structured branching process to analyse contact tracing in the SARS-CoV-2 pandemic

Philosophical Transactions of the Royal Society B: Biological Sciences
2021-07-19 | Journal article
Contributors: Martyn Fyles; Elizabeth Fearon; Christopher Overton; Tom Wingfield; Graham F. Medley; Ian Hall; Lorenzo Pellis; Thomas House
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics

2021-06-10 | Other
Contributors: Louise Dyson; Edward M. Hill; Sam Moore; Jacob Curran-Sebastian; Michael J. Tildesley; Katrina A Lythgoe; Thomas House; Lorenzo Pellis; Matt J. Keeling
Source: check_circle
Crossref

Statistical Design and Analysis of Diagnostic Tests for Mutating Viruses

2021-04-09 | Other
Contributors: Yang Han; Yujia Sun; Jason C. Hsu; Thomas House; Nick Gent; Ian Hall
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

On the use of LFA tests in contact tracing

2020 | Working paper | Author
SOURCE-WORK-ID:

ba338f05-c261-49ba-8eef-5478fde6cd4d

Contributors: E Fearon; M Fyles; Thomas House; Lorenzo Pellis; I Hall; Caroline Jay; P Crowther; Helena Stage; R Das; G Medley et al.
Source: check_circle
University of Manchester - PURE

Short-term forecasts to inform the response to the Covid-19 epidemic in the UK

medRxiv
2020-12-04 | Working paper | Author
SOURCE-WORK-ID:

95414c01-1821-419f-a506-31f963e06cec

Contributors: S. Funk; S. Abbott; B. D. Atkins; M. Baguelin; J. K. Baillie; P. Birrell; J. Blake; N. I. Bosse; J. Burton; J. Carruthers et al.
Source: check_circle
University of Manchester - PURE
Items per page:
Page 1 of 3

Peer review (11 reviews for 6 publications/grants)

Review activity for Applied network science. (1)
Review activity for BMJ open. (2)
Review activity for Bulletin of mathematical biology. (1)
Review activity for Epidemics. (2)
Review activity for Journal of mathematical biology. (3)
Review activity for PLoS computational biology. (2)