Personal information

Websites & social links

https://www.igb-berlin.de/en/profile/michael-t-monaghan

Keywords

molecular ecology, freshwater

Countries

Germany

Biography

Senior Scientist and Research Group Leader (Molecular Ecology and Genomics) at the Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany

Professor, Institut für Biologie, Freie Universität Berlin

Activities

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Employment (3)

Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB): Berlin, DE

2008 to present | Senior Scientist / Research Group Leader
Employment
Source: Self-asserted source
Michael T. Monaghan

Imperial College London: London, London, GB

2003 to 2008 | Post-doctoral Fellow (2003-04) / Associate (2004-08) (based at the Natural History Museum)
Employment
Source: Self-asserted source
Michael T. Monaghan

EAWAG: Dübendorf, CH

1998-06 to 2002-08 | Doctoral student researcher
Employment
Source: Self-asserted source
Michael T. Monaghan

Education and qualifications (1)

ETH Zürich: Zürich, CH

1998-06 to 2002-05 | Dr. sc. nat.
Education
Source: Self-asserted source
Michael T. Monaghan

Professional activities (5)

Ecological Society of America: Washington, DC, US

2021 to present | Subject Matter Editor (Ecology)
Service
Source: Self-asserted source
Michael T. Monaghan

Pensoft Publishers: Sofia, BG

2017 to present | Subject Editor (Metabarcoding and Metagenomics)
Service
Source: Self-asserted source
Michael T. Monaghan

Ehime University: Matsuyama, JP

2015 to present | Guest Professor
Invited position
Source: Self-asserted source
Michael T. Monaghan

Elsevier BV: Amsterdam, Noord-Holland, NL

2010 to 2018 | Associate Editor (Aquatic Ecology)
Service
Source: Self-asserted source
Michael T. Monaghan

Duke-NUS Medical School: Singapore, SG

2016-03 to 2016-08 | Visiting Professor (Emerging and Infectious Diseases)
Invited position
Source: Self-asserted source
Michael T. Monaghan

Works (50 of 89)

Items per page:
Page 1 of 2

Urban pavements as a novel habitat for wild bees and other ground-nesting insects

Urban Ecosystems
2024-12 | Journal article
DOI: 10.1007/s11252-024-01569-3
Contributors: Claudia Weber; Grégoire Noël; Wiebke Sickel; Michael T. Monaghan; Aletta Bonn; Sophie Lokatis
Source: check_circle
Crossref

Rapid growth and the evolution of complete metamorphosis in insects

Proceedings of the National Academy of Sciences
2024-09-17 | Journal article
DOI: 10.1073/pnas.2402980121
Contributors: Christin Manthey; C. Jessica E. Metcalf; Michael T. Monaghan; Ulrich K. Steiner; Jens Rolff
Source: check_circle
Crossref

Phylogenomics including new sequence data of phytoplankton-infecting chytrids reveals multiple independent lifestyle transitions across the phylum

Molecular Phylogenetics and Evolution
2024-08 | Journal article
DOI: 10.1016/j.ympev.2024.108103
Part of ISSN: 1055-7903
Contributors: Pauline C. Thomé; Justyna Wolinska; Silke Van Den Wyngaert; Albert Reñé; Doris Ilicic; Ramsy Agha; Hans-Peter Grossart; Esther Garcés; Michael T. Monaghan; Jürgen F. H. Strassert
Source: Self-asserted source
Michael T. Monaghan

The haplotype-resolved Prymnesium parvum (type B) microalga genome reveals the genetic basis of its fish-killing toxins

Current Biology
2024-08 | Journal article
DOI: 10.1016/j.cub.2024.06.033
Part of ISSN: 0960-9822
Contributors: Heiner Kuhl; Jürgen F.H. Strassert; Dora Čertnerová; Elisabeth Varga; Eva Kreuz; Dunja K. Lamatsch; Sven Wuertz; Jan Köhler; Michael T. Monaghan; Matthias Stöck
Source: Self-asserted source
Michael T. Monaghan

Unpredicted ecosystem response to compound human impacts in a European river

Scientific Reports
2024-07-16 | Journal article
DOI: 10.1038/s41598-024-66943-9
Part of ISSN: 2045-2322
Contributors: Jan Köhler; Elisabeth Varga; Stephanie Spahr; Jörn Gessner; Kerstin Stelzer; Gunnar Brandt; Miguel D. Mahecha; Guido Kraemer; Martin Pusch; Christian Wolter et al.
Source: Self-asserted source
Michael T. Monaghan

Environmental DNA, hydrochemistry and stable water isotopes as integrative tracers of urban ecohydrology

Water Research
2024-02 | Journal article
DOI: 10.1016/j.watres.2023.121065
Part of ISSN: 0043-1354
Contributors: Dr. Maria Magdalena Warter; Dörthe Tetzlaff; Ann-Marie Ring; Jan Christopher; Hanna L. Kissener; Elisabeth Funke; Sarah Sparmann; Susan Mbedi; Chris Soulsby; Michael T. Monaghan
Source: Self-asserted source
Michael T. Monaghan

Single-cell genomics reveals new rozellid lineages and supports their sister relationship to Microsporidia

Biology Letters
2023-12 | Journal article
DOI: 10.1098/rsbl.2023.0398
Contributors: Pauline C. Thomé; Iker Irisarri; Justyna Wolinska; Michael T. Monaghan; Jürgen F. H. Strassert
Source: check_circle
Crossref

Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps

PeerJ
2023-10-10 | Journal article
DOI: 10.7717/peerj.16022
Part of ISSN: 2167-8359
Contributors: Lucas Sire; Paul Schmidt Yáñez; Annie Bézier; Béatrice Courtial; Susan Mbedi; Sarah Sparmann; Laurent Larrieu; Rodolphe Rougerie; Christophe Bouget; Michael T. Monaghan et al.
Source: Self-asserted source
Michael T. Monaghan

How genomics can help biodiversity conservation

Trends in Genetics
2023-07 | Journal article
DOI: 10.1016/j.tig.2023.01.005
Part of ISSN: 0168-9525
Contributors: Kathrin Theissinger; Carlos Fernandes; Giulio Formenti; Iliana Bista; Paul R. Berg; Christoph Bleidorn; Aureliano Bombarely; Angelica Crottini; Guido R. Gallo; José A. Godoy et al.
Source: Self-asserted source
Michael T. Monaghan

Large-scale sampling of the freshwater microbiome suggests pollution-driven ecosystem changes

Environmental Pollution
2022-09 | Journal article
DOI: 10.1016/j.envpol.2022.119627
Part of ISSN: 0269-7491
Contributors: Katrin Premke; Christian Wurzbacher; Katja Felsmann; Jenny Fabian; Robert Taube; Pascal Bodmer; Katrin Attermeyer; Kai Nils Nitzsche; Sibylle Schroer; Matthias Koschorreck et al.
Source: Self-asserted source
Michael T. Monaghan

Phylogenomic insights into the early diversification of fungi

Current Biology
2022-08 | Journal article
DOI: 10.1016/j.cub.2022.06.057
Part of ISSN: 0960-9822
Contributors: Jürgen F.H. Strassert; Michael T. Monaghan
Source: Self-asserted source
Michael T. Monaghan

The era of reference genomes in conservation genomics

Trends in Ecology & Evolution
2022-03 | Journal article
DOI: 10.1016/j.tree.2021.11.008
Part of ISSN: 0169-5347
Contributors: Giulio Formenti; Kathrin Theissinger; Carlos Fernandes; Iliana Bista; Aureliano Bombarely; Christoph Bleidorn; Claudio Ciofi; Angelica Crottini; José A. Godoy; Jacob Höglund et al.
Source: Self-asserted source
Michael T. Monaghan

A global agenda for advancing freshwater biodiversity research

Ecology Letters
2021-12 | Journal article
DOI: 10.1111/ele.13931
Part of ISSN: 1461-023X
Part of ISSN: 1461-0248
Source: Self-asserted source
Michael T. Monaghan

Temporal dynamics of freshwater planktonic parasites inferred using a DNA metabarcoding time-series

Parasitology
2021-11 | Journal article
DOI: 10.1017/s0031182021001293
Part of ISSN: 0031-1820
Part of ISSN: 1469-8161
Source: Self-asserted source
Michael T. Monaghan

Temperature drives variation in flying insect biomass across a German malaise trap network

Insect Conservation and Diversity
2021-11-19 | Journal article
DOI: 10.1111/icad.12555
Part of ISSN: 1752-458X
Part of ISSN: 1752-4598
Source: Self-asserted source
Michael T. Monaghan

Trade‐offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What's behind the term?” by Pawlowski et al., (2020)

Molecular Ecology
2021-10 | Journal article
DOI: 10.1111/mec.15942
Part of ISSN: 0962-1083
Part of ISSN: 1365-294X
Source: Self-asserted source
Michael T. Monaghan

Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica

Journal of Fungi
2021-10-12 | Journal article
DOI: 10.3390/jof7100854
Contributors: Felix Heeger; Elizabeth C. Bourne; Christian Wurzbacher; Elisabeth Funke; Anna Lipzen; Guifen He; Vivian Ng; Igor V. Grigoriev; Dietmar Schlosser; Michael T. Monaghan
Source: check_circle
Crossref

Three mitochondrial genomes of early-winged insects (Ephemeroptera: Baetidae and Leptophlebiidae)

Mitochondrial DNA Part B
2021-10-03 | Journal article
DOI: 10.1080/23802359.2021.1974966
Contributors: Sereina Rutschmann; Ping Chen; Changfa Zhou; Michael T. Monaghan
Source: check_circle
Crossref

PriSeT: efficient de novo primer discovery

Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics
2021-08 | Journal article
DOI: 10.1145/3459930.3469546
Source: Self-asserted source
Michael T. Monaghan

Encapsulation of Anguillicola crassus reduces the abundance of adult parasite stages in the European eel (Anguilla anguilla)

Journal of Fish Diseases
2021-06 | Journal article
DOI: 10.1111/jfd.13301
Contributors: Seraina E. Bracamonte; Klaus Knopf; Michael T. Monaghan
Source: check_circle
Crossref

Revisiting global trends in freshwater insect biodiversity

WIREs Water
2021-03 | Journal article | Author
DOI: 10.1002/wat2.1506
Part of ISSN: 2049-1948
Part of ISSN: 2049-1948
Contributors: Sonja C. Jähnig; Viktor Baranov; Florian Altermatt; Peter Cranston; Given Names Deactivated Family Name Deactivated; Juergen Geist; Fengzhi He; Jani Heino; Daniel Hering; Franz Hölker et al.
Source: Self-asserted source
Michael T. Monaghan

Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience

Conservation Letters
2021-01 | Journal article | Author
DOI: 10.1111/conl.12771
Part of ISSN: 1755-263X
Part of ISSN: 1755-263X
Contributors: Charles van Rees; Kerry Waylen; Astrid Schmidt-Kloiber; Stephen J. Thackeray; Gregor Kalinkat; Koen Martens; Sami Domisch; Ana I. Lillebø; Virgilio Hermoso; Hans-Peter Grossart et al.
Source: Self-asserted source
Michael T. Monaghan

Artificial Light at Night Influences Clock-Gene Expression, Activity, and Fecundity in the Mosquito Culex pipiens f. molestus

Sustainability
2019-11-06 | Journal article
DOI: 10.3390/su11226220
Contributors: Ann-Christin Honnen; Janina L. Kypke; Franz Hölker; Michael T. Monaghan
Source: check_circle
Crossref

Combining the 5.8S and ITS2 to improve classification of fungi

Methods in Ecology and Evolution
2019-10 | Journal article
DOI: 10.1111/2041-210X.13266
Contributors: Felix Heeger; Christian Wurzbacher; Elizabeth C. Bourne; Camila J. Mazzoni; Michael T. Monaghan; Douglas Yu
Source: check_circle
Crossref

Experimental infection with Anguillicola crassus alters immune gene expression in both spleen and head kidney of the European eel (Anguilla anguilla)

Marine Genomics
2019-06 | Journal article
DOI: 10.1016/j.margen.2018.12.002
Contributors: Seraina E. Bracamonte; Paul R. Johnston; Klaus Knopf; Michael T. Monaghan
Source: check_circle
Crossref

Long‐read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments

Molecular Ecology Resources
2018-11 | Journal article
DOI: 10.1111/1755-0998.12937
Contributors: Felix Heeger; Elizabeth C. Bourne; Christiane Baschien; Andrey Yurkov; Boyke Bunk; Cathrin Spröer; Jörg Overmann; Camila J. Mazzoni; Michael T. Monaghan
Source: check_circle
Crossref

Shifts among Eukarya, Bacteria, and Archaea define the vertical organization of a lake sediment

Microbiome
2017 | Journal article
Source: Self-asserted source
Michael T. Monaghan

DISCOMARK: nuclear marker discovery from orthologous sequences using draft genome data

Molecular Ecology Resources
2017-03 | Journal article
DOI: 10.1111/1755-0998.12576
Part of ISSN: 1755-098X
Source: Self-asserted source
Michael T. Monaghan

Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome.

Molecular phylogenetics and evolution
2016 | Journal article
DOI: 10.1016/j.ympev.2016.10.007
WOSUID:

MEDLINE:27742475
Contributors: Rutschmann, Sereina; Detering, Harald; Simon, Sabrina; Funk, David H; Gattolliat, Jean-Luc; Hughes, Samantha J; Raposeiro, Pedro M; DeSalle, Rob; Sartori, Michel; Monaghan, Michael T
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae)

Bmc Evolutionary Biology
2016 | Journal article
DOI: 10.1186/s12862-016-0758-1
WOSUID:

WOS:000384017300001
Contributors: Vuataz, Laurent; Rutschmann, Sereina; Monaghan, Michael T.; Sartori, Michel
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Sex-specific gene expression in the mosquito Culex pipiens f. molestus in response to artificial light at night

Bmc Genomics
2016 | Journal article
DOI: 10.1186/s12864-015-2336-0
WOSUID:

WOS:000367566300005
Contributors: Honnen, Ann-Christin; Johnston, Paul R.; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

DiscoMark: Nuclear marker discovery from orthologous sequences using draft genome data

2016-04-07 | Preprint
DOI: 10.1101/047282
Contributors: Sereina Rutschmann; Harald Detering; Sabrina Simon; Jakob Fredslund; Michael T. Monaghan
Source: check_circle
Crossref

Dispersal is linked to habitat use in 59 species of water beetles (Coleoptera: Adephaga) on Madagascar

Ecography
2015 | Journal article
DOI: 10.1111/ecog.01138
WOSUID:

WOS:000357135900009
Contributors: Hjalmarsson, Anna E.; Bergsten, Johannes; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night

Philosophical Transactions of the Royal Society B-Biological Sciences
2015 | Journal article
DOI: 10.1098/rstb.2014.0130
WOSUID:

WOS:000351223400012
Contributors: Hoelker, Franz; Wurzbacher, Christian; Weissenborn, Carsten; Monaghan, Michael T.; Holzhauer, Stephanie I. J.; Premke, Katrin
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Out of the Dark: Establishing a Large-Scale Field Experiment to Assess the Effects of Artificial Light at Night on Species and Food Webs

Sustainability
2015-11-20 | Journal article
DOI: 10.3390/su71115593
Contributors: Stephanie Holzhauer; Steffen Franke; Christopher Kyba; Alessandro Manfrin; Reinhard Klenke; Christian Voigt; Daniel Lewanzik; Martin Oehlert; Michael Monaghan; Sebastian Schneider et al.
Source: check_circle
Crossref

Adaptive Genetic Divergence along Narrow Environmental Gradients in Four Stream Insects

Plos One
2014 | Journal article
DOI:

10.1371/journal.pone.0093055

WOSUID:

WOS:000333678100022
Contributors: Watanabe, Kozo; Kazama, So; Omura, Tatsuo; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Association of adult female and male stoneflies (Plecoptera) from an Alpine river using wing morphometrics and mitochondrial DNA

Aquatic Insects
2014 | Journal article
DOI: 10.1080/01650424.2015.1013038
WOSUID:

WOS:000351276600001
Contributors: Gamboa, Maribet; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Basic and applied uses of molecular approaches in freshwater ecology

Freshwater Science
2014 | Journal article
DOI:

10.1086/675254

WOSUID:

WOS:000332322400015
Contributors: Hughes, Jane M.; Finn, Debra S.; Monaghan, Michael T.; Schultheis, Alicia; Sweeney, Bernard W.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Evolution and island endemism of morphologically cryptic Baetis and Cloeon species (Ephemeroptera, Baetidae) on the Canary Islands and Madeira

Freshwater Biology
2014 | Journal article
DOI:

10.1111/fwb.12450

WOSUID:

WOS:000344778800007
Contributors: Rutschmann, Sereina; Gattolliat, Jean-Luc; Hughes, Samantha J.; Baez, Marcos; Sartori, Michel; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Fine-scale dispersal in a stream caddisfly inferred from spatial autocorrelation of microsatellite markers

Freshwater Science
2014 | Journal article
DOI:

10.1086/675076

WOSUID:

WOS:000332322400016
Contributors: Yaegashi, Sakiko; Watanabe, Kozo; Monaghan, Michael T.; Omura, Tatsuo
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Freshwater Biodiversity and Aquatic Insect Diversification

Annual Review of Entomology, Vol 59, 2014
2014 | Journal article
DOI:

10.1146/annurev-ento-011613-161958

WOSUID:

WOS:000329608900009
Contributors: Dijkstra, Klaas-Douwe B.; Monaghan, Michael T.; Pauls, Steffen U.; Berenbaum, MR
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Integrating molecular tools into freshwater ecology: developments and opportunities

Freshwater Biology
2014 | Journal article
DOI:

10.1111/fwb.12381

WOSUID:

WOS:000339385100001
Contributors: Pauls, Steffen U.; Alp, Maria; Balint, Miklos; Bernabo, Paola; Ciampor, Fedor, Jr.; Ciamporova-Zatovicova, Zuzana; Finn, Debra S.; Kohout, Jan; Leese, Florian; Lencioni, Valeria et al.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Occurrence and host preferences of Anopheles maculipennis group mosquitoes in England and Wales

Medical and Veterinary Entomology
2014 | Journal article
DOI:

10.1111/mve.12023

WOSUID:

WOS:000337572500006
Contributors: Danabalan, R.; Monaghan, M. T.; Ponsonby, D. J.; Linton, Y. -M.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes

Molecular Ecology Resources
2014 | Journal article
DOI:

10.1111/1755-0998.12257

WOSUID:

WOS:000343805400010
Contributors: Geiger, M. F.; Herder, F.; Monaghan, M. T.; Almada, V.; Barbieri, R.; Bariche, M.; Berrebi, P.; Bohlen, J.; Casal-Lopez, M.; Delmastro, G. B. et al.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

The towering orogeny of New Guinea as a trigger for arthropod megadiversity

Nature Communications
2014 | Journal article
DOI:

10.1038/ncomms5001

WOSUID:

WOS:000337542100002
Contributors: Toussaint, Emmanuel F. A.; Hall, Robert; Monaghan, Michael T.; Sagata, Katayo; Ibalim, Sentiko; Shaverdo, Helena V.; Vogler, Alfried P.; Pons, Joan; Balke, Michael
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Clear, crashing, turbid and back - long-term changes in macrophyte assemblages in a shallow lake

Freshwater Biology
2013 | Journal article
DOI:

10.1111/fwb.12188

WOSUID:

WOS:000323724600003
Contributors: Hilt, Sabine; Koehler, Jan; Adrian, Rita; Monaghan, Michael T.; Sayer, Carl D.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Effects of predation pressure and resource use on morphological divergence in omnivorous prey fish.

BMC evolutionary biology
2013 | Journal article
DOI:

10.1186/1471-2148-13-132

Part of ISSN:

1471-2148
Contributors: Mehner, Thomas; Monaghan, Michael T; Scharnweber, Kristin; Syvaranta, Jari; Wanke, Thomas; Watanabe, Kozo
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

Endemism and diversification in freshwater insects of Madagascar revealed by coalescent and phylogenetic analysis of museum and field collections

Molecular Phylogenetics and Evolution
2013 | Journal article
DOI:

10.1016/j.ympev.2012.12.003

Part of ISSN:

1055-7903
Contributors: Gattolliat, Jean-Luc; Monaghan, Michael T.; Sartori, Michel; Vuataz, Laurent
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

A molecular approach to identifying the natural prey of the African creeping water bug Naucoris, a potential reservoir of Mycobacterium ulcerans

Journal of Insect Science
2012 | Journal article
Contributors: Gamboa, Maribet; Kimbirauskas, Ryan K.; Merritt, Richard W.; Monaghan, Michael T.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID

The Effect of Geographical Scale of Sampling on DNA Barcoding

Systematic Biology
2012 | Journal article
DOI:

10.1093/sysbio/sys037
Contributors: Balke, Michael; Barraclough, Timothy G.; Bergsten, Johannes; Bilton, David T.; Elliott, Miranda; Foster, Garth N.; Fujisawa, Tomochika; Geijer, Joja; Hendrich, Lars; Herrmann, Jan et al.
Source: Self-asserted source
Michael T. Monaghan via ResearcherID
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