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Works (29)

Species‐level, metagenomic and proteomic analysis of microbe‐immune interactions in severe asthma

Allergy
2024-11 | Journal article
Contributors: Maisha F. Jabeen; Nicholas D. Sanderson; Mariaenrica Tinè; Gillian Donachie; Clair Barber; Adnan Azim; Laurie C. K. Lau; Thomas Brown; Ian D. Pavord; Anoop Chauhan et al.
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Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

Microbial Genomics
2024-05-07 | Journal article
Contributors: Nicholas D. Sanderson; Katie M.V. Hopkins; Matthew Colpus; Melody Parker; Samuel Lipworth; Derrick Crook; Nicole Stoesser
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Target enrichment improves culture-independent detection of Neisseria gonorrhoeae and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing

Microbial Genomics
2024-03-26 | Journal article
Contributors: Teresa L. Street; Nicholas D. Sanderson; Leanne Barker; James Kavanagh; Kevin Cole; Martin Llewelyn; David W. Eyre
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Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

2024-01-12 | Preprint
Contributors: Nicholas D Sanderson; Katie Hopkins; Matthew Colpus; Melody Parker; Sam Lipworth; Derrick Crook; Nicole Stoesser
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Target enrichment improves culture-independent detection ofNeisseria gonorrhoeaedirect from sample with Nanopore sequencing

2024-01-10 | Preprint
Contributors: Teresa L. Street; Nicholas D. Sanderson; Leanne Barker; James Kavanagh; Kevin Cole; Martin Llewelyn; David W. Eyre
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Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction

2022-04-30 | Preprint
Contributors: Nicholas Sanderson; Natalia Kapel; Gillian Rodger; Hermione Webster; Samuel Lipworth; Teresa street; Tim Peto; Derrick Crook; Nicole Stoesser
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Optimized use of Oxford Nanopore flowcells for hybrid assemblies

Microbial Genomics
2020-11-01 | Journal article
Contributors: Samuel Lipworth; Hayleah Pickford; Nicholas Sanderson; Kevin K. Chau; James Kavanagh; Leanne Barker; Alison Vaughan; Jeremy Swann; Monique Andersson; Katie Jeffery et al.
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Multiple novel non-canonically transcribed sub-genomic mRNAs produced by avian coronavirus infectious bronchitis virus

Journal of General Virology
2020-10-01 | Journal article
Contributors: Sarah Keep; Michael S. Oade; Filip Lidzbarski-Silvestre; Kirsten Bentley; Phoebe Stevenson-Leggett; Graham L. Freimanis; Chandana Tennakoon; Nicholas Sanderson; John A. Hammond; Richard C. Jones et al.
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High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

Genome Research
2020-09-01 | Journal article
Contributors: Nicholas D. Sanderson; Jeremy Swann; Leanne Barker; James Kavanagh; Sarah Hoosdally; Derrick Crook; Teresa L. Street; David W. Eyre
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Two Lineages of KLRA with Contrasting Transcription Patterns Have Been Conserved at a Single Locus during Ruminant Speciation

The Journal of Immunology
2020-05-01 | Journal article
Contributors: Mark S. Gibson; Alasdair J. Allan; Nicholas D. Sanderson; James Birch; Simon Gubbins; Shirley A. Ellis; John A. Hammond
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Metagenomic sequencing as a clinical diagnostic tool for infectious diseases: a systematic review and meta-analysis

2020-04-02 | Other
Contributors: Kumeren N. Govender; Teresa L. Street; Nicholas D. Sanderson; David W. Eyre
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Crossref

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

2020-03-06 | Preprint
Contributors: Samuel Lipworth; Hayleah Pickford; Nicholas Sanderson; Kevin K Chau; James Kavanagh; Leanne Barker; Alison Vaughan; Jeremy Swann; Monique Andersson; Katie Jeffery et al.
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Crossref

High precisionNeisseria gonorrhoeaevariant and antimicrobial resistance calling from metagenomic Nanopore sequencing

2020-02-09 | Preprint
Contributors: Nicholas D Sanderson; Jeremy Swann; Leanne Barker; James Kavanagh; Sarah Hoosdally; Derrick Crook; Teresa L Street; David W Eyre
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Crossref

Detection in the United Kingdom of the Neisseria gonorrhoeae FC428 clone, with ceftriaxone resistance and intermediate resistance to azithromycin, October to December 2018

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin
2019 | Journal article
EID:

2-s2.0-85062857930

Contributors: Eyre, D.W.; Town, K.; Street, T.; Barker, L.; Sanderson, N.; Cole, M.J.; Mohammed, H.; Pitt, R.; Gobin, M.; Irish, C. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

Journal of Clinical Microbiology
2019-12-18 | Journal article
Part of ISSN: 0095-1137
Part of ISSN: 1098-660X
Source: Self-asserted source
Nicholas Sanderson

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Microbial Genomics
2019-09-01 | Journal article
Contributors: Nicola De Maio; Liam P. Shaw; Alasdair Hubbard; Sophie George; Nicholas D. Sanderson; Jeremy Swann; Ryan Wick; Manal AbuOun; Emma Stubberfield; Sarah J. Hoosdally et al.
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Crossref

Control of artifactual variation in reported intersample relatedness during clinical use of a mycobacterium tuberculosis sequencing pipeline

Journal of Clinical Microbiology
2018 | Journal article
EID:

2-s2.0-85050936833

Contributors: Wyllie, D.H.; Sanderson, N.; Myers, R.; Peto, T.; Robinson, E.; Crook, D.W.; Smith, E.G.; Walker, A.S.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing

Journal of Medical Microbiology
2018 | Journal article
EID:

2-s2.0-85043282079

Contributors: Anson, L.W.; Chau, K.; Sanderson, N.; Hoosdally, S.; Bradley, P.; Iqbal, Z.; Phan, H.; Foster, D.; Oakley, S.; Morgan, M. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018

Eurosurveillance
2018 | Journal article
EID:

2-s2.0-85050473994

Contributors: Eyre, D.W.; Sanderson, N.D.; Lord, E.; Regisford-Reimmer, N.; Chau, K.; Barker, L.; Morgan, M.; Newnham, R.; Golparian, D.; Unemo, M. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Nomenclature for the KIR of non-human species

Immunogenetics
2018 | Journal article
EID:

2-s2.0-85047970120

Contributors: Robinson, J.; Guethlein, L.A.; Maccari, G.; Blokhuis, J.; Bimber, B.N.; de Groot, N.G.; Sanderson, N.D.; Abi-Rached, L.; Walter, L.; Bontrop, R.E. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices

BMC Genomics
2018-12 | Journal article
Contributors: Nicholas D Sanderson; Teresa L Street; Dona Foster; Jeremy Swann; Bridget L Atkins; Andrew J Brent; Martin A McNally; Sarah Oakley; Adrian Taylor; Tim E A Peto et al.
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Crossref
grade
Preferred source (of 2)‎

Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

Journal of Clinical Microbiology
2017 | Journal article
Source: Self-asserted source
Nicholas Sanderson
grade
Preferred source (of 2)‎

Same-day diagnostic and surveillance data for tuberculosis via whole-genome sequencing of direct respiratory samples

Journal of Clinical Microbiology
2017 | Journal article
EID:

2-s2.0-85018305549

Contributors: Votintseva, A.A.; Bradley, P.; Pankhurst, L.; Del Ojo Elias, C.; Loose, M.; Nilgiriwala, K.; Chatterjee, A.; Smith, E.G.; Sanderson, N.; Walker, T.M. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Real-time analysis of nanopore-based metagenomic sequencing from orthopaedic device infection

2017-11-17 | Other
Contributors: Nicholas D Sanderson; Teresa L Street; Dona Foster; Jeremy Swann; Bridget L. Atkins; Andrew J. Brent; Martin A. McNally; Sarah Oakley; Adrian Taylor; Tim E A Peto et al.
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Crossref

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples.

bioRxiv
2016 | Journal article
ARXIV:

https://www.biorxiv.org/content/early/2016/12/16/094789.full.pdf

Source: Self-asserted source
Nicholas Sanderson

Cattle NK Cell Heterogeneity and the Influence of MHC Class I.

Journal of immunology (Baltimore, Md. : 1950)
2015 | Journal article
Source: Self-asserted source
Nicholas Sanderson
grade
Preferred source (of 2)‎

A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq

BMC Genomics
2014 | Journal article
Part of ISBN:

1471-2164 (Electronic)$\backslash$r1471-2164 (Linking)

Source: Self-asserted source
Nicholas Sanderson
grade
Preferred source (of 2)‎

Definition of the cattle killer cell Ig-like receptor gene family: Comparison with aurochs and human counterparts

Journal of Immunology
2014 | Journal article
EID:

2-s2.0-84916894960

Contributors: Sanderson, N.D.; Norman, P.J.; Guethlein, L.A.; Ellis, S.A.; Williams, C.; Breen, M.; Park, S.D.E.; Magee, D.A.; Babrzadeh, F.; Warry, A. et al.
Source: Self-asserted source
Nicholas Sanderson via Scopus - Elsevier

Definition of the Cattle Killer Cell Immunoglobulin-like Receptor Gene Family and Comparison to Aurochs and Human Counterparts

Journal Of Immunology
2014 | Journal article
Source: Self-asserted source
Nicholas Sanderson

Peer review (8 reviews for 5 publications/grants)

Review activity for Access microbiology. (1)
Review activity for BMC biology. (1)
Review activity for BMC infectious diseases (1)
Review activity for Folia microbiologica. (1)
Review activity for Microbial genomics. (4)