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Characterization and engineering of the type 3 secretion system needle monomer from <i>Salmonella</i> through the construction and screening of a comprehensive mutagenesis library

mSphere
2024-08-28 | Journal article | Author
DOI: 10.1128/msphere.00367-24
Part of ISSN: 2379-5042
Contributors: Lisa Ann Burdette; Samuel Alexander Leach; Nolan Kennedy; Bon C. Ikwuagwu; Jordan S. Summers; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek

Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists

Nature Communications
2024-06-26 | Journal article | Author
DOI: 10.1038/s41467-024-49626-x
Part of ISSN: 2041-1723
Contributors: Ashty Karim; Dylan Brown; Chloé M. Archuleta; Sharisse Grannan; Ludmilla Aristilde; Yogesh Goyal; Joshua Leonard; N M Mangan; Arthur Prindle; Gabriel J. Rocklin et al.
Source: Self-asserted source
Danielle Tullman-Ercek

Quantitative high-throughput measurement of bulk mechanical properties using commonly available equipment

Materials Horizons
2023 | Journal article | Author
DOI: 10.1039/d2mh01064j
Part of ISSN: 2051-6355
Contributors: Justin E. Griffith; Yusu Chen; Qingsong Liu; Qifeng Wang; Jeffrey Richards; Danielle Tullman-Ercek; Kenneth Shull; Muzhou Wang
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Kinetic Growth of Multicomponent Microcompartment Shells

ACS Nano
2023-08-08 | Journal article | Author
DOI: 10.1021/acsnano.3c03353
Part of ISSN: 1936-086X
Contributors: Curt Waltmann; Nolan W. Kennedy; Carolyn E. Mills; Eric W. Roth; Svetlana P. Ikonomova; Danielle Tullman-Ercek; Monica Olvera de la Cruz
Source: Self-asserted source
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Theoretical and Practical Aspects of Multienzyme Organization and Encapsulation

Annual Review of Biophysics
2023-05-09 | Journal article
DOI: 10.1146/annurev-biophys-092222-020832
Part of ISSN: 1936-1238
Contributors: Charlotte H. Abrahamson; Brett J. Palmero; Nolan W. Kennedy; Danielle Tullman-Ercek
Source: Self-asserted source
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Systematic engineering of virus-like particles to identify self-assembly rules for shifting particle size

Virology
2023-02 | Journal article | Author
DOI: 10.1016/j.virol.2023.01.002
Part of ISSN: 0042-6822
Contributors: Bon Ikwuagwu; Emily Hartman; Carolyn E. Mills; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Construction of a constitutively active type III secretion system for heterologous protein secretion

Applied Microbiology and Biotechnology
2023-02-14 | Journal article | Author
DOI: 10.1007/s00253-023-12411-9
Part of ISSN: 1432-0614
Contributors: Julie Ming Liang; Lisa Ann Burdette; Han Teng Wong; Danielle Tullman-Ercek
Source: Self-asserted source
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Virus-like particles for drug delivery: a review of methods and applications

Current Opinion in Biotechnology
2022-12 | Journal article
DOI: 10.1016/j.copbio.2022.102785
Part of ISSN: 0958-1669
Contributors: Bon Ikwuagwu; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Linking the Salmonella enterica 1,2-Propanediol Utilization Bacterial Microcompartment Shell to the Enzymatic Core via the Shell Protein PduB

Journal of Bacteriology
2022-09-20 | Journal article | Author
DOI: 10.1128/jb.00576-21
Part of ISSN: 1098-5530
Contributors: Nolan Kennedy; Carolyn Elaine Mills; Charlotte H. Abrahamson; Andre G. Archer; Sasha Shirman; Michael Jewett; N M Mangan; Danielle Tullman-Ercek; Mohamed Y. El-Naggar
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology

Nature Communications
2022-06-29 | Journal article | Author
DOI: 10.1038/s41467-022-31279-3
Part of ISSN: 2041-1723
Contributors: Carolyn E. Mills; Curt Waltmann; Andre G. Archer; Nolan W. Kennedy; Charlotte H. Abrahamson; Alexander D. Jackson; Eric W. Roth; Sasha Shirman; Michael Jewett; Niall M. Mangan et al.
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Functional enzyme–polymer complexes

Proceedings of the National Academy of Sciences
2022-03-21 | Journal article | Author
DOI: 10.1073/pnas.2119509119
Part of ISSN: 1091-6490
Contributors: Curt Waltmann; Carolyn E. Mills; Jeremy Wang; Baofu Qiao; John M. Torkelson; Danielle Tullman-Ercek; Monica Olvera de la Cruz
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Mussel Adhesive-Inspired Proteomimetic Polymer

Journal of the American Chemical Society
2022-03-03 | Journal article | Author
DOI: 10.1021/jacs.1c10936
Part of ISSN: 1520-5126
Contributors: Or Berger; Claudia Battistella; Yusu Chen; Julia Oktawiec; Zofia Siwicka; Danielle Tullman-Ercek; Muzhou Wang; Nathan Gianneschi
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Editorial overview: Bacterial microcompartments to the fore as metabolism is put in its place

Current Opinion in Microbiology
2021-12 | Journal article
DOI: 10.1016/j.mib.2021.10.011
Part of ISSN: 1369-5274
Contributors: Danielle Tullman-Ercek; Martin Warren
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper

Bioinformatics
2021-11-04 | Journal article
DOI: 10.1093/bioinformatics/btab752
Part of ISSN: 1367-4811
Contributors: Alexander McFarland; Nolan W Kennedy; Carolyn E Mills; Danielle Tullman-Ercek; Curtis Huttenhower; Erica M Hartmann; Peter Robinson
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

High-Throughput Screening Test for Adhesion in Soft Materials Using Centrifugation

ACS Central Science
2021-06-28 | Journal article | Author
DOI: 10.1021/acscentsci.1c00414
Part of ISSN: 2374-7951
Contributors: Yusu Chen; Qifeng Wang; Carolyn E. Mills; Johanna G. Kann; Kenneth Shull; Danielle Tullman-Ercek; Muzhou Wang
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Computational and Experimental Approaches to Controlling Bacterial Microcompartment Assembly

ACS Central Science
2021-04-13 | Journal article | Author
DOI: 10.1021/acscentsci.0c01699
Part of ISSN: 2374-7951
Contributors: Yaohua Li; Nolan W. Kennedy; Siyu Li; Carolyn E. Mills; Danielle Tullman-Ercek; Monica Olvera de la Cruz
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Dynamic Control of Gene Expression with Riboregulated Switchable Feedback Promoters

ACS Synthetic Biology
2021-04-09 | Journal article | Author
DOI: 10.1021/acssynbio.1c00015
Part of ISSN: 2161-5063
Contributors: Cameron Glasscock; Bradley W. Biggs; John T. Lazar; Jack H. Arnold; Lisa Burdette; Aliki Valdes; Min-Kyoung Kang; Danielle Tullman-Ercek; Keith Tyo; Julius Lucks
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

An optimized growth medium for increased recombinant protein secretion titer via the type III secretion system

Microbial Cell Factories
2021-02-15 | Journal article | Author
DOI: 10.1186/s12934-021-01536-z
Part of ISSN: 1475-2859
Contributors: Lisa Ann Burdette; Han Teng Wong; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Self-assembling Shell Proteins PduA and PduJ have Essential and Redundant Roles in Bacterial Microcompartment Assembly

Journal of Molecular Biology
2021-01 | Journal article
DOI: 10.1016/j.jmb.2020.11.020
Part of ISSN: 0022-2836
Contributors: Nolan W. Kennedy; Svetlana P. Ikonomova; Marilyn Slininger Lee; Henry W. Raeder; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Engineering a Virus-like Particle to Display Peptide Insertions Using an Apparent Fitness Landscape

Biomacromolecules
2020-09-03 | Journal article | Author
DOI: 10.1021/acs.biomac.0c00987
Part of ISSN: 1526-4602
Contributors: Stephanie A. Robinson; Emily C. Hartman; Bon C. Ikwuagwu; Matthew Francis; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

A genomic integration platform for heterologous cargo encapsulation in 1,2-propanediol utilization bacterial microcompartments

Biochemical Engineering Journal
2020-04 | Journal article | Author
DOI: 10.1016/j.bej.2020.107496
Part of ISSN: 1369-703X
Contributors: Taylor M. Nichols; Nolan W. Kennedy; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Apparent size and morphology of bacterial microcompartments varies with technique

PLOS ONE
2020-03-09 | Journal article | Author
DOI: 10.1371/journal.pone.0226395
Part of ISSN: 1932-6203
Contributors: Nolan Kennedy; Jasmine Hershewe; Taylor M. Nichols; Eric W. Roth; Charlene D. Wilke; Carolyn Elaine Mills; Michael C. Jewett; Danielle Tullman-Ercek; Christopher V. Rao
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes

Nature Methods
2020-03-02 | Journal article
DOI: 10.1038/s41592-020-0764-5
Part of ISSN: 1548-7105
Contributors: Jared O. Kafader; Rafael D. Melani; Kenneth R. Durbin; Bon Ikwuagwu; Bryan P. Early; Ryan T. Fellers; Steven C. Beu; Vlad Zabrouskov; Alexander Makarov; Joshua T. Maze et al.
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Editorial overview: Energy biotechnology

Current Opinion in Biotechnology
2019-06 | Journal article
DOI: 10.1016/j.copbio.2019.06.001
Part of ISSN: 0958-1669
Contributors: Cynthia H Collins; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Learning from protein fitness landscapes: a review of mutability, epistasis, and evolution

Current Opinion in Systems Biology
2019-04 | Journal article
DOI: 10.1016/j.coisb.2019.02.006
Part of ISSN: 2452-3100
Contributors: Emily C. Hartman; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Systematic Engineering of a Protein Nanocage for High-Yield, Site-Specific Modification

Journal of the American Chemical Society
2019-02-07 | Journal article | Author
DOI: 10.1021/jacs.8b10734
Part of ISSN: 1520-5126
Contributors: Daniel D. Brauer; Emily C. Hartman; Daniel L. V. Bader; Zoe N. Merz; Danielle Tullman-Ercek; Matthew Francis
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

From the Periodic Table to the Dinner Table

Mom the Chemistry Professor
2018 | Book chapter
DOI: 10.1007/978-3-319-78972-9_35
Part of ISBN: 9783319789729
Contributors: Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Type III Secretion Filaments as Templates for Metallic Nanostructure Synthesis

Methods in Molecular Biology
2018 | Book chapter
DOI: 10.1007/978-1-4939-7893-9_12
Part of ISBN: 9781493978939
Part of ISSN: 1940-6029
Contributors: Anum Azam Glasgow; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Developing Gram-negative bacteria for the secretion of heterologous proteins

Microbial Cell Factories
2018-12 | Journal article | Author
DOI: 10.1186/s12934-018-1041-5
Part of ISSN: 1475-2859
Contributors: Lisa Ann Burdette; Samuel Alexander Leach; Han Teng Wong; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Experimental Evaluation of Coevolution in a Self-Assembling Particle

Biochemistry
2018-11-12 | Journal article | Author
DOI: 10.1021/acs.biochem.8b00948
Part of ISSN: 1520-4995
Contributors: Emily C. Hartman; Marco J. Lobba; Andrew H. Favor; Stephanie A. Robinson; Matthew Francis; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets

Microbial Cell Factories
2018-08-30 | Journal article
DOI: 10.1186/s12934-018-0979-7
Part of ISSN: 1475-2859
Contributors: Kevin Metcalf; Marilyn F. Slininger Lee; Christopher Matthew Jakobson; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory

Scientific Reports
2018-05-29 | Journal article
DOI: 10.1038/s41598-018-26399-0
Part of ISSN: 2045-2322
Contributors: Christopher M. Jakobson; Danielle Tullman-Ercek; N M Mangan
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

A Pseudomonas putida efflux pump acts on short-chain alcohols

Biotechnology for Biofuels
2018-05-11 | Journal article
DOI: 10.1186/s13068-018-1133-9
Part of ISSN: 1754-6834
Contributors: Georg Basler; Mitchell Thompson; Danielle Tullman-Ercek; Jay Keasling
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Dissecting difference in heterologous protein secretion titer by Type III secretion system between strains of <i>Salmonella enterica</i>

The FASEB Journal
2018-04 | Journal article
DOI: 10.1096/fasebj.2018.32.1_supplement.674.22
Part of ISSN: 1530-6860
Contributors: Han Teng Wong; Danielle Tullman‐Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle

Nature Communications
2018-04-11 | Journal article
DOI: 10.1038/s41467-018-03783-y
Part of ISSN: 2041-1723
Contributors: Emily C. Hartman; Christopher M. Jakobson; Andrew H. Favor; Marco J. Lobba; Ester Álvarez-Benedicto; Matthew B. Francis; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae

Biotechnology for Biofuels
2018-04-02 | Journal article | Author
DOI: 10.1186/s13068-018-1089-9
Part of ISSN: 1754-6834
Contributors: Stephanie A. Davis López; Douglas Andrew Griffith; Brian Choi; Jamie H. D. Cate; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Practical considerations for the encapsulation of multi-enzyme cargos within the bacterial microcompartment for metabolic engineering

Current Opinion in Systems Biology
2017-10 | Journal article
DOI: 10.1016/j.coisb.2017.05.017
Part of ISSN: 2452-3100
Contributors: Marilyn Slininger Lee; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering

ACS Synthetic Biology
2017-06-21 | Journal article
DOI: 10.1021/acssynbio.7b00042
Part of ISSN: 2161-5063
Contributors: Marilyn F. Slininger Lee; Christopher M. Jakobson; Marilyn Slininger Lee
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration

PLOS Computational Biology
2017-05-05 | Journal article | Author
DOI: 10.1371/journal.pcbi.1005525
Part of ISSN: 1553-7358
Contributors: Christopher M. Jakobson; Danielle Tullman-Ercek; Marilyn F. Slininger; N M Mangan; Jason A Papin
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

<i>De novo</i> design of signal sequences to localize cargo to the 1,2‐propanediol utilization microcompartment

Protein Science
2017-04-17 | Journal article
DOI: 10.1002/pro.3144
Part of ISSN: 1469-896X
Contributors: Christopher M. Jakobson; Marilyn F. Slininger Lee; Danielle Tullman‐Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

A Secretion-Amplification Role for <i>Salmonella enterica</i> Translocon Protein SipD

ACS Synthetic Biology
2017-03-16 | Journal article
DOI: 10.1021/acssynbio.6b00335
Part of ISSN: 2161-5063
Contributors: Anum Glasgow; Han Teng Wong; Marilyn Slininger Lee
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Proteins adopt functionally active conformations after type III secretion

Microbial Cell Factories
2016-12 | Journal article
DOI: 10.1186/s12934-016-0606-4
Part of ISSN: 1475-2859
Contributors: Kevin James Metcalf; James Lea Bevington; Sandy Lisette Rosales; Lisa Ann Burdette; Elias Valdivia; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Use of Transcriptional Control to Increase Secretion of Heterologous Proteins in T3S Systems

Methods in Molecular Biology
2016-11-12 | Book chapter
DOI: 10.1007/978-1-4939-6649-3_6
Part of ISBN: 9781493966493
Part of ISSN: 1940-6029
Contributors: Kevin J. Metcalf; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Correction to A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle

Nano Letters
2016-11-10 | Journal article
DOI: 10.1021/acs.nanolett.6b04653
Part of ISSN: 1530-6992
Contributors: Michael A. Asensio; Norma M. Morella; Christopher M. Jakobson; Emily C. Hartman; Jeff E. Glasgow; Banumathi Sankaran; Peter H. Zwart; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

The structure of the S37P MS2 viral capsid assembly.

2016-09-07 | Other
DOI: 10.2210/pdb4zor/pdb
Contributors: M.A. Asensio; B. Sankaran; P.H. Zwart; D. Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle

Nano Letters
2016-08-25 | Journal article
DOI: 10.1021/acs.nanolett.6b02948
Part of ISSN: 1530-6992
Contributors: Michael A. Asensio; Norma M. Morella; Christopher M. Jakobson; Emily C. Hartman; Jeff E. Glasgow; Banumathi Sankaran; Peter H. Zwart; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Tuning the Catalytic Activity of Subcellular Nanoreactors

Journal of Molecular Biology
2016-07 | Journal article
DOI: 10.1016/j.jmb.2016.07.006
Part of ISSN: 0022-2836
Contributors: Christopher M. Jakobson; Yiqun Chen; Marilyn F. Slininger; Elias Valdivia; Edward Y. Kim; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Dumpster Diving in the Gut: Bacterial Microcompartments as Part of a Host-Associated Lifestyle

PLOS Pathogens
2016-05-12 | Journal article
DOI: 10.1371/journal.ppat.1005558
Part of ISSN: 1553-7374
Contributors: Christopher M. Jakobson; Danielle Tullman-Ercek; Virginia L. Miller
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Engineering Bioelectronic Signal Transduction Using the Bacterial Type III Secretion Apparatus

2016-03-01 | Report
DOI: 10.2172/1561163
Contributors: Anum Azam; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search

Transcriptional feedback regulation of efflux protein expression for increased tolerance to and production of n-butanol

Metabolic Engineering
2016-01 | Journal article
DOI: 10.1016/j.ymben.2015.11.005
Part of ISSN: 1096-7176
Contributors: Sergey Boyarskiy; Stephanie Davis López; Niwen Kong; Danielle Tullman-Ercek
Source: Self-asserted source
Danielle Tullman-Ercek via Crossref Metadata Search
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Peer review (25 reviews for 9 publications/grants)

Review activity for ACS catalysis. (4)
Review activity for ACS nano. (1)
Review activity for ACS synthetic biology. (11)
Review activity for Applied microbiology and biotechnology (1)
Review activity for Communications materials. (1)
Review activity for Current opinion in biotechnology. (1)
Review activity for Current opinion in microbiology. (1)
Review activity for Nano letters. (2)
Review activity for Nature communications (3)
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