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University of Helsinki: Helsinki, FI

Employment
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University of Helsinki

Works (33)

Genetic drivers and cellular selection of female mosaic X chromosome loss

Nature
2024-06-12 | Journal article | Author
SOURCE-WORK-ID:

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EID:

2-s2.0-85197973294

WOSUID:

001259955400018

Contributors: FinnGen; Estonian Biobank Research Team; Breast Cancer Association Consortium; Million Veteran Program; Aoxing Liu; Giulio Genovese; Yajie Zhao; Matti Pirinen; Seyedeh M. Zekavat; Katherine A. Kentistou et al.
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University of Helsinki

Narcolepsy risk loci outline role of T cell autoimmunity and infectious triggers in narcolepsy

Nature Communications
2023-05-15 | Journal article
SOURCE-WORK-ID:

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WOSUID:

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EID:

2-s2.0-85159459680

Contributors: FinnGen; Hanna Ollila; Eilon Sharon; Ling Lin; Nasa Sinnott-Armstrong; Aditya Ambati; Selina M. Yogeshwar; Ryan P. Hillary; Otto Jolanki; Juliette Faraco et al.
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University of Helsinki

Evidence of a causal effect of genetic tendency to gain muscle mass on uterine leiomyomata

Nature Communications
2023-02-01 | Journal article
SOURCE-WORK-ID:

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WOSUID:

001034930800003

EID:

2-s2.0-85147235209

Contributors: Eeva Sliz; Jaakko S. Tyrmi; Nilufer Rahmioglu; Krina T. Zondervan; Christian M. Becker; Outi Uimari; Johannes Kettunen; Aarno Palotie; Mark J. Daly; Bridget Riley-Gills et al.
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University of Helsinki

FinnGen provides genetic insights from a well-phenotyped isolated population

Nature
2023-01-19 | Journal article | Author
SOURCE-WORK-ID:

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EID:

2-s2.0-85146485867

WOSUID:

000928299100001

Contributors: FinnGen; Mitja I. Kurki; Juha Karjalainen; Priit Palta; Timo Sipilä; Kati Kristiansson; Kati Donner; Mary P. Reeve; Hannele Maaret Laivuori; Mervi Aavikko et al.
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University of Helsinki

Distinct Taphrina strains from the phyllosphere of birch exhibiting a range of witches' broom disease symptoms

Environmental Microbiology
2022-08 | Journal article | Author
SOURCE-WORK-ID:

c46e989a-041d-491c-81f7-e9772473835d

WOSUID:

000796398700001

Contributors: Margaretta Christita; Timo Sipilä; Agate Auzane; Kirk Loren Overmyer
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University of Helsinki

A Taphrina strain infecting the model plant Arabidopsis thaliana

2021-09-19 | Other
Contributors: Margaretta Christita; Agate Auzane; Kai Wang; Timo Sipilä; Petri Auvinen; Lars Paulin; Jarkko Salojärvi; Kirk Overmyer
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Crossref

The isolation and characterization of Taphrina betulina and other yeasts residing in the Betula pendula phylloplane

2021-09-17 | Other
Contributors: Margaretta Christita; Timo P. Sipilä; Kirk Overmyer
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Crossref

A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data

IMA Fungus
2021-03-19 | Journal article | Author
SOURCE-WORK-ID:

d2b8a262-66fe-4774-b684-f07996cb53b8

WOSUID:

000630745600001

Contributors: Kai Wang; Timo Sipilä; Kirk Loren Overmyer
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University of Helsinki

A novelArabidopsisphyllosphere residentProtomycessp. and a re-examination of genusProtomycesbased on genome sequence data

2019-12-13 | Preprint
Contributors: Kai Wang; Timo Sipilä; Kirk Overmyer
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Crossref

Genetic architecture of human plasma lipidome and its link to cardiovascular disease

Nature Communications
2019-09-24 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

000487357600002

Contributors: FinnGen Project; Rubina Tabassum; Joel Aapo Topias Rämö; Jaakko Pietari Ripatti; Jukka Tapio Koskela; Mitja Kurki; Juha Karjalainen; Priit Palta; Shabbeer Hassan; Javier Nunez-Fontarnau et al.
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University of Helsinki

A novel phyllosphere residentProtomycesspecies that interacts with theArabidopsisimmune system

2019-03-31 | Other
Contributors: Kai Wang; Timo Sipilä; Sitaram Rajaraman; Omid Safronov; Pia Laine; Agate Auzane; Alfredo Mari; Petri Auvinen; Lars Paulin; Eric Kemen et al.
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Crossref

Nordic Exome Variant Catalogue a Web Resource for Genomic Data Browsing

2018 IEEE 14th International Conference on e-Science (e-Science)
2018 | Conference paper | Author
SOURCE-WORK-ID:

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WOSUID:

000459856400108

Part of ISBN: 978-1-5386-9156-4
Contributors: Timo Sipilä; Andres Metspalu; Paavo Häppölä; Priit Palta; Mart Kals; Aarno Palotie
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University of Helsinki

Rhizoremediation in Cold Climates

Psychrophiles: From Biodiversity to Biotechnology
2017 | Book chapter | Author
SOURCE-WORK-ID:

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EID:

2-s2.0-85033983854

Part of ISBN: 978-3-319-57057-0
Part of ISBN: 978-3-319-57056-3
Contributors: Kim Yrjälä; Timo Sipilä; Shinjini Mukherjee
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University of Helsinki

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Nature Genetics
2017-05-08 | Journal article
SOURCE-WORK-ID:

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WOSUID:

000402062300015

EID:

2-s2.0-85019662133

Contributors: Jarkko Salojärvi; Olli-Pekka Smolander; Kaisa Nieminen; Sitaram Rajaraman; Omid Safronov; Pezhman Safdari; Airi Lamminmäki; Juha Immanen; Tianying Lan; Jaakko Tanskanen et al.
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University of Helsinki

Isolation and characterization of resident yeasts from the phylloplane of Arabidopsis thaliana

Scientific Reports
2016-12 | Journal article | Author
SOURCE-WORK-ID:

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EID:

2-s2.0-85006922900

WOSUID:

000390306900001

Contributors: Kai Wang; Timo Sipilä; Kirk Loren Overmyer
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University of Helsinki

Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol

Analytical Biochemistry
2015-05-15 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

2-s2.0-84964294613

Contributors: Juhana I. Kammonen; Olli-Pekka Smolander; Timo Sipilä; Kirk Loren Overmyer; Petri Auvinen; Lars Paulin
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University of Helsinki

Secondary successional trajectories of structural and catabolic bacterial communities in oil-polluted soil planted with hybrid poplar

Molecular Ecology
2015-02 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

000348516900008

EID:

2-s2.0-84925303875

Contributors: Shinjini Mukherjee; Timo Sipilä; Pertti Pulkkinen; Kim Yrjälä
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University of Helsinki

Sijaintipaikka, maan syvyys vai maataloustoimenpiteet - mikä vaikuttaa peltomaan mikrobiyhteisöihin?

Pro Terra
2013 | Conference paper | Author
SOURCE-WORK-ID:

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Contributors: Timo Sipilä; Kim Yrjälä; Laura Elina Alakukku; Ansa Palojärvi
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University of Helsinki

Secondary succession of bacterial communities and co-occurrence of phylotypes in oil-polluted Populus rhizosphere

Soil Biology & Biochemistry
2013-03 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

000317158300024

EID:

2-s2.0-84871648615

Contributors: Shinjini Mukherjee; Mirja Heinonen; Magali Dequvire; Timo Sipilä; Pertti Pulkkinen; Kim Yrjälä
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University of Helsinki

Muokkausmenetelmien vaikutus maaperän mikrobistoon ja niiden tarjoamiin ekosysteemipalveluihin

Maataloustieteen päivät 2012
2012 | Conference paper | Author
SOURCE-WORK-ID:

6cac1729-37f1-45a3-9b23-2506b08d7dbd

Part of ISBN: 978-951-9041-56-8
Contributors: Timo Sipilä; Kim Yrjälä; Laura Elina Alakukku; Ansa Palojärvi
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University of Helsinki

Viljelykierto ja monipuolinen kasvilajisto peltomaan hyötymikrobiston edistäjän

Maataloustieteen päivät 2012
2012 | Conference paper | Author
SOURCE-WORK-ID:

0955f8ea-f2ca-4391-ad91-4734bf500cf9

Part of ISBN: 978-951-9041-56-8
Contributors: Ansa Palojärvi; Mauritz Vestberg; Timo Sipilä; Pauliina Lankinen; Kim Yrjälä; Marjo Keskitalo; Laura Elina Alakukku
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University of Helsinki

Cross-site soil microbial communities under tillage regimes: fungistasis and microbial biomarkers

Applied and Environmental Microbiology
2012-12 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

2-s2.0-84870834771

Contributors: Timo Sipilä; Kim Yrjälä; Laura Elina Alakukku; Ansa Palojärvi
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University of Helsinki

Leaf Number Indicates Salt Tolerance of Young Seedling Families of European Aspen (Populus tremula L.) Growing in Different Soils

Silva Fennica
2011 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

000291081000002

EID:

2-s2.0-79957538596

Contributors: Lu-Min Vaario; Kim Yrjälä; Matti Rousi; Timo Sipilä; Pertti Pulkkinen
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University of Helsinki

Muokkausmenetelmien vaikutus peltomaiden mikrobiyhteisöihin ja tautisienten tukahduttamiskykyyn

Mieli maassa - maa mielessä 40 v.
2011 | Conference paper | Author
SOURCE-WORK-ID:

b13cc09a-8e2a-4ac5-9461-2fd62710c69b

Part of ISBN: 978-952-10-6781-5
Part of ISBN: 978-952-10-6780-8
Contributors: Timo Sipilä; Kim Yrjälä; Laura Elina Alakukku; Ansa Palojärvi
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University of Helsinki

Pellon kasvipeitteisyyden teknologia muuttuvassa ilmastossa – maaperämikrobien ekosysteemipalvelujen hyödyntäminen

Maataloustieteen päivät 2010
2010 | Conference paper | Author
SOURCE-WORK-ID:

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Part of ISBN: 978-951-9041-54-4
Contributors: Ansa Palojärvi; Timo Sipilä; Kim Yrjälä; Laura Elina Alakukku
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University of Helsinki

Sphingobium sp. HV3 degrades both herbicides and polyaromatic hydrocarbons using ortho- and meta-pathways with differential expression shown by RT-PCR

Biodegradation
2010 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

2-s2.0-77955269398

Contributors: Timo Sipilä; Pave Väisänen; Lars Göran Paulin; Kim Yrjälä
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University of Helsinki

The incidence of Burkholderia in epiphytic and endophytic bacterial cenoses in hybrid aspen grown on sandy peat

Boreal Environment Research
2010 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

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Contributors: Kim Yrjälä; Giulia Mancano; Carola Fortelius; Marja-Leena Akerman; Timo Sipilä
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University of Helsinki

The rhizosphere and PAH amendment mediate impacts on functional and structural bacterial diversity in sandy peat soil

Environmental Pollution
2010 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

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Contributors: Kim Yrjälä; Anna-Kaisa Keskinen; Marja-Leena Åkerman; Carola Fortelius; Timo Sipilä
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University of Helsinki

Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community

Environmental Pollution
2009 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

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EID:

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Contributors: Arja I Tervahauta; Carola Fortelius; Marjo Tuomainen; Marja-Leena Åkerman; Kimmo Rantalainen; Timo Sipilä; Satu J Lehesranta; Kaisa M Koistinen; Sirpa Kärenlampi; Kim Yrjälä
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University of Helsinki

High aromatic ring-cleavage diversity in birch rhizosphere

ISME Journal
2008 | Journal article | Author
SOURCE-WORK-ID:

4a020781-9123-4306-b07d-26020e3ce7ee

WOSUID:

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EID:

2-s2.0-51449105903

Contributors: Timo Sipilä; Anna-Kaisa Keskinen; Marja-Leena Akerman; Carola Fortelius; Kielo Haahtela; Kim Yrjälä
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University of Helsinki

Woody plants with associated microbial communities in phytoremediation of PAHs

Fate of pollutants in the plant/rhizosphere system
2007 | Conference paper | Author
SOURCE-WORK-ID:

b9391896-384f-4857-8c7e-fb5bb52e60b7

Part of ISBN: 978-9955-28-123-8
Contributors: Kim Yrjälä; Timo Sipilä; Anna-Kaisa Keskinen; Marja-Leena Åkerman; Kielo Haahtela; Carola Fortelius
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University of Helsinki

Novel upper meta-pathway extradiol dioxygenase gene diversity in polluted soil

FEMS Microbiology Ecology
2006 | Journal article | Author
SOURCE-WORK-ID:

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WOSUID:

000240367500012

EID:

2-s2.0-33748551051

Contributors: Timo Sipilä; Heikki Riisiö; Kim Yrjälä
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University of Helsinki

Catabolic bacterial community illustrated by amplification of bphC gene in polluted soils.

Maaperän vuorovaikutukset
2005 | Conference paper | Author
SOURCE-WORK-ID:

c29cf099-0946-48aa-bf48-e61a7da4adc6

Part of ISBN: 952-10-2275-2
Contributors: Timo Sipilä; Heikki Riisiö; Kim Yrjälä
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University of Helsinki