Personal information

Emails & domains

Verified email domains

Websites & social links

https://physgenlab.weebly.com/

Other IDs

Loop profile: 573991

Keywords

comparative physiology, comparative endocrinology, metabolism, stress, marine mammals

Countries

United States

Activities

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Employment (2)

University of the Pacific: Stockton, CA, US

2021-09-01 to present | Associate Profesosr (Biological Sciences Department)
Employment
Source: Self-asserted source
Jane Khudyakov

University of the Pacific: Stockton, CA, US

2016-08-01 to 2021-08-31 | Assistant Professor (Biological Sciences Department)
Employment
Source: Self-asserted source
Jane Khudyakov

Professional activities (2)

The Society for Integrative and Comparative Biology: Herndon, VA, US

Membership
Source: Self-asserted source
Jane Khudyakov

American Physiological Society: Bethesda, Maryland, US

( Comparative and Environmental Physiology Section)
Membership
Source: Self-asserted source
Jane Khudyakov

Funding (4)

Molecular Indicators of Physiological Stress and Its Health Effects in Cetaceans

2023-06-01 to 2025-05-31 | Grant
United States Department of the Navy (Arlington, US)
URL: https://app.dimensions.ai/details/grant/grant.13511280
GRANT_NUMBER:

N000142312444
Source: Self-asserted source
Jane Khudyakov via DimensionsWizard

Collaborative Research: Role of endogenous carbon monoxide (CO) in hypoxia tolerant species

2019-08-15 to 2022-07-31 | Grant
Directorate for Biological Sciences (Arlington, US)
URL: https://app.dimensions.ai/details/grant/grant.8522111
GRANT_NUMBER: 1927616
Source: Self-asserted source
Jane Khudyakov via DimensionsWizard

Quantitative Gene Expression System for State-of-the-Art Biomarker Research and Development at an Undergraduate Institution

2018-03-06 to 2019-05-31 | Grant
United States Department of the Navy (Arlington, US)
URL: https://app.dimensions.ai/details/grant/grant.7674117
GRANT_NUMBER:

N000141812224
Source: Self-asserted source
Jane Khudyakov via DimensionsWizard

Molecular Indicators of Chronic Stress in a Model Pinniped - The Northern Elephant Seal

2015-09 to 2019-09 | Award
Office of Naval Research (Arlington, VA, US)
GRANT_NUMBER:

N00014-15-1-2773
Source: Self-asserted source
Jane Khudyakov

Works (29)

Protein Sample Preparation for Bottom-Up, Label-Free Quantitative Proteomics of Adipose Tissue

2025 | Book chapter
DOI: 10.1007/978-1-0716-4298-6_4
Contributors: Jane I. Khudyakov
Source: check_circle
Crossref

The plasma proteome reveals markers of recent and repeated stress in free-ranging seals.

Conservation physiology
2024-11-04 | Journal article
DOI: 10.1093/conphys/coae075
PMID: 39498350
PMC: PMC11533252
Contributors: Avalos JG; Champagne CD; Crocker DE; Khudyakov JI
Source: Self-asserted source
Jane Khudyakov

Ex vivo and in vitro methods as a platform for studying anthropogenic effects on marine mammals: four challenges and how to meet them

Frontiers in Marine Science
2024-10-11 | Journal article
DOI: 10.3389/fmars.2024.1466968
Part of ISSN: 2296-7745
Contributors: Juan Manuel Vazquez; Jane I. Khudyakov; Carla B. Madelaire; Céline A. Godard-Codding; Heli Routti; Emily K. Lam; Elizabeth R. Piotrowski; Greg B. Merrill; Jillian H. Wisse; Kaitlin N. Allen et al.
Source: Self-asserted source
Jane Khudyakov

Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals.

Molecular biology and evolution
2024-04-01 | Journal article
DOI: 10.1093/molbev/msae075
PMID: 38606905
PMC: PMC11050727
Contributors: Gaudry MJ; Khudyakov J; Pirard L; Debier C; Crocker D; Paul Crichton; Martin Jastroch
Source: Self-asserted source
Jane Khudyakov

Intracellular negative feedback mechanisms in blubber and muscle moderate acute stress responses in fasting seals

Journal of Experimental Biology
2023-12-15 | Journal article
DOI: 10.1242/jeb.246694
Contributors: Jessica G. Avalos; Elizabeth R. Piotrowski; Allison D. Northey; Daniel E. Crocker; Jane I. Khudyakov
Source: check_circle
Crossref

Effects of cortisol, epinephrine, and bisphenol contaminants on the transcriptional landscape of marine mammal blubber

American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
2023-11-01 | Journal article
DOI: 10.1152/ajpregu.00165.2023
Contributors: Lauren Kashiwabara; Laura Pirard; Cathy Debier; Daniel Crocker; Jane Khudyakov
Source: check_circle
Crossref

Changes in apolipoprotein abundance dominate proteome responses to prolonged fasting in elephant seals

Journal of Experimental Biology
2022-02-15 | Journal article
DOI: 10.1242/jeb.243572
Contributors: Jane I. Khudyakov; Rachel R. Holser; Craig A. Vierra; Serena T. Ly; Theron K. Niel; Basma M. Hasan; Daniel E. Crocker; Daniel P. Costa
Source: check_circle
Crossref

Ontogeny of Carbon Monoxide-Related Gene Expression in a Deep-Diving Marine Mammal

Frontiers in Physiology
2021-10-21 | Journal article
DOI: 10.3389/fphys.2021.762102
Part of ISSN: 1664-042X
Source: Self-asserted source
Jane Khudyakov

Liver proteome response to torpor in a basoendothermic mammal, Tenrec ecaudatus, provides insights into the evolution of homeothermy

American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
2021-10-01 | Journal article
DOI: 10.1152/ajpregu.00150.2021
Contributors: Jane I. Khudyakov; Michael D. Treat; Mikayla C. Shanafelt; Jared S. Deyarmin; Benjamin A. Neely; Frank van Breukelen
Source: check_circle
Crossref

Elephant seal muscle cells adapt to sustained glucocorticoid exposure by shifting their metabolic phenotype

American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
2021-09-01 | Journal article
DOI: 10.1152/ajpregu.00052.2021
Contributors: Julia María Torres-Velarde; Sree Rohit Raj Kolora; Jane I. Khudyakov; Daniel E. Crocker; Peter H. Sudmant; José Pablo Vázquez-Medina
Source: check_circle
Crossref

Changes in serum adipokines during natural extended fasts in female northern elephant seals

General and Comparative Endocrinology
2021-07 | Journal article
DOI: 10.1016/j.ygcen.2021.113760
Part of ISSN: 0016-6480
Source: Self-asserted source
Jane Khudyakov

Elephant seal muscle cells adapt to sustained glucocorticoid exposure by shifting their metabolic phenotype

2021-02-07 | Preprint
DOI: 10.1101/2021.02.05.429992
Contributors: Julia Maria Torres-Velarde; Sree Rohit Raj Kolora; Jane I. Khudyakov; Daniel E. Crocker; Peter H. Sudmant; José Pablo Vázquez-Medina
Source: check_circle
Crossref

Blubber proteome response to repeated ACTH administration in a wild marine mammal

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
2020-03 | Journal article
DOI: 10.1016/j.cbd.2019.100644
Part of ISSN: 1744-117X
Source: Self-asserted source
Jane Khudyakov

A blubber gene expression index for evaluating stress in marine mammals

Conservation Physiology
2020-01-01 | Journal article
DOI: 10.1093/conphys/coaa082
Part of ISSN: 2051-1434
Source: Self-asserted source
Jane Khudyakov

Expression of obesity-related adipokine genes during fasting in a naturally obese marine mammal

American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
2019-10-01 | Journal article
DOI: 10.1152/ajpregu.00182.2019
Part of ISSN: 0363-6119
Part of ISSN: 1522-1490
Source: Self-asserted source
Jane Khudyakov

Blubber transcriptome responses to repeated ACTH administration in a marine mammal

Scientific Reports
2019-02-25 | Journal article
DOI: 10.1038/s41598-019-39089-2
Contributors: Jared S. Deyarmin; Molly C. McCormley; Cory D. Champagne; Alicia P. Stephan; Laura Pujade Busqueta; Daniel E. Crocker; Dorian S. Houser; Jane I. Khudyakov
Source: check_circle
Crossref

A sample preparation workflow for adipose tissue shotgun proteomics and proteogenomics

Biology Open
2018-01-01 | Journal article
DOI: 10.1242/bio.036731
Contributors: Jane I. Khudyakov; Jared S. Deyarmin; Ryan M. Hekman; Laura Pujade Busqueta; Rasool Maan; Melony J. Mody; Reeti Banerjee; Daniel E. Crocker; Cory D. Champagne
Source: check_circle
Crossref

Repeated adrenocorticotropic hormone administration alters adrenal and thyroid hormones in free-ranging elephant seals

Conservation Physiology
2018-01-01 | Journal article
DOI: 10.1093/conphys/coy040
Part of ISSN: 2051-1434
Source: Self-asserted source
Jane Khudyakov

Blubber transcriptome response to acute stress axis activation involves transient changes in adipogenesis and lipolysis in a fasting-adapted marine mammal

Scientific Reports
2017-03 | Journal article
DOI: 10.1038/srep42110
Part of ISSN: 2045-2322
Source: Self-asserted source
Jane Khudyakov

Oxidative stress in northern elephant seals: Integration of omics approaches with ecological and experimental studies

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
2016-02 | Journal article
DOI: 10.1016/j.cbpa.2016.02.011
Contributors: Daniel E. Crocker; Jane I. Khudyakov; Cory D. Champagne
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Transcriptome analysis of northern elephant seal (Mirounga angustirostris) muscle tissue provides a novel molecular resource and physiological insights

BMC Genomics
2015 | Journal article
DOI: 10.1186/s12864-015-1253-6
Contributors: Jane I Khudyakov; Likit Preeyanon; Cory D Champagne; Rudy M Ortiz; Daniel E Crocker
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Muscle transcriptome response to ACTH administration in a free-ranging marine mammal

Physiol. Genomics
2015-06-02 | Journal article
DOI: 10.1152/physiolgenomics.00030.2015
Contributors: Jane I. Khudyakov; Cory D. Champagne; Likit Preeyanon; Rudy M. Ortiz; Daniel E. Crocker
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw

Biotechnol Biofuels
2014 | Journal article
DOI: 10.1186/s13068-014-0180-0
Contributors: Christopher W Simmons; Amitha P Reddy; Patrik D’haeseleer; Jane Khudyakov; Konstantinos Billis; Amrita Pati; Blake A Simmons; Steven W Singer; Michael P Thelen; Jean S VanderGheynst
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses

PLoS ONE
2013-10 | Journal article
DOI: 10.1371/journal.pone.0077985
Contributors: Amitha P. Reddy; Christopher W. Simmons; Patrik D’haeseleer; Jane Khudyakov; Helcio Burd; Masood Hadi; Blake A. Simmons; Steven W. Singer; Michael P. Thelen; Jean S. VanderGheynst et al.
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus

Proceedings of the National Academy of Sciences
2012-05 | Journal article
DOI: 10.1073/pnas.1112750109
Contributors: J. I. Khudyakov; P. D'haeseleer; S. E. Borglin; K. M. DeAngelis; H. Woo; E. A. Lindquist; T. C. Hazen; B. A. Simmons; M. P. Thelen
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Application of phenotypic microarrays to environmental microbiology

Current Opinion in Biotechnology
2012-02 | Journal article
DOI: 10.1016/j.copbio.2011.12.006
Contributors: Sharon Borglin; Dominique Joyner; Kristen M DeAngelis; Jane Khudyakov; Patrik D’haeseleer; Marcin P Joachimiak; Terry Hazen
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Complete genome sequence of “Enterobacter lignolyticus” SCF1

Stand. Genomic Sci.
2011-09 | Journal article
DOI: 10.4056/sigs.2104875
Contributors: Kristen M. DeAngelis; Patrik D’Haeseleer; Dylan Chivian; Julian L. Fortney; Jane Khudyakov; Blake Simmons; Hannah Woo; Adam P. Arkin; Karen Walston Davenport; Lynne Goodwin et al.
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Comprehensive spatiotemporal analysis of early chick neural crest network genes

Dev. Dyn.
2009-03 | Journal article
DOI: 10.1002/dvdy.21881
Contributors: Jane Khudyakov; Marianne Bronner-Fraser
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

SOX2 Functions to Maintain Neural Progenitor Identity

Neuron
2003-08 | Journal article
DOI: 10.1016/s0896-6273(03)00497-5
Contributors: Victoria Graham; Jane Khudyakov; Pamela Ellis; Larysa Pevny
Source: Self-asserted source
Jane Khudyakov via Crossref Metadata Search

Peer review (4 reviews for 4 publications/grants)

Review activity for BMC genomics (1)
Review activity for Cell stress & chaperones. (1)
Review activity for Comparative biochemistry and physiology (1)
Review activity for The journal of experimental biology. (1)
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